Gchil6851.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6851.t1
Unique NameGchil6851.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length551
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:421335..422987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6851Gchil6851Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 421335..422987 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6851.t1.stop1Gchil6851.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 421335..421337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6851.t1.CDS1Gchil6851.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 421335..422987 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6851.t1.exon1Gchil6851.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 421335..422987 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6851.t1.start1Gchil6851.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 422985..422987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6851.t1Gchil6851.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 421335..422987 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6851.t1 ID=Gchil6851.t1|Name=Gchil6851.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp
MPTVPIPVSPNWRIEPTRNSFVICPTRQYLSRFCADVARLRRFERQIVLV
CSSNSSQSTRDYSVHFSRIIYHGGPLLSHVKSFVEATPDYIVRVPIQDNH
IAFRYVTDYVYASSVNISRLSVSDCVQLALSCSKWKCVDFYVAVLRFLVQ
RNRLITPRQFAVSTPLLWLPQERVAFADYYFLNVQIVMERMHLTQLIDLA
FATHAANRTPLCNRVLAQIMESHPQTQITEMQLRRLLPLFQHIQLPDFMV
QYMVRSIGHSFRAFSLKPHRASAPAHETRQHVLCQPKSPDMEHSFYSRYL
AVVDDDELFWNIVCRNGLADPLIRLVMQSERNMLVHIVKTIARYIEPRRE
NIETLADMLSDISQMMTTGECDMLLRDMTRIDNWSKRATMLVASVCLHQA
FERYETQLPVRLQWAHVGRQPITELTNTSIDGIKFGVQVHSTFDCESKIV
LTCRGDENKLLTLYTSIHFVAWIVDTDCRCDSLQLLRRFTDGCLFAFNDD
LINKRSTTVFCLIESVTLLNTSDVRNWRLKHGKDCTAQMKIRIELERKQT
*
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spliced messenger RNA

>Gchil6851.t1 ID=Gchil6851.t1|Name=Gchil6851.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004376_pilon:421335..422987- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGACCGTACCCATCCCCGTGAGTCCTAACTGGCGAATCGAACCAAC
CCGCAATAGCTTCGTCATATGTCCCACTCGCCAATACCTCTCGCGCTTCT
GCGCCGATGTCGCTCGACTTCGCCGTTTTGAACGTCAAATCGTCCTCGTC
TGCTCTTCCAACTCATCGCAATCAACCAGGGATTACTCGGTGCATTTCTC
GCGCATTATCTACCACGGAGGCCCGCTTTTGAGCCATGTCAAATCGTTTG
TAGAAGCTACACCCGACTATATTGTACGAGTCCCAATCCAAGATAACCAT
ATAGCGTTTAGATACGTCACGGACTATGTTTATGCATCCAGTGTAAACAT
CAGTCGCTTATCTGTTTCGGATTGTGTTCAGCTTGCTCTATCCTGTAGCA
AATGGAAGTGTGTCGATTTTTACGTTGCTGTTCTACGCTTTCTTGTGCAA
CGCAACCGTTTAATAACTCCGCGTCAGTTTGCAGTGAGCACCCCGCTTTT
GTGGCTCCCACAAGAGCGAGTAGCTTTCGCTGACTATTACTTTCTTAATG
TCCAAATTGTCATGGAGAGAATGCATCTCACTCAACTGATTGATCTTGCA
TTTGCCACTCATGCAGCAAATCGCACCCCTCTTTGTAATCGCGTGCTTGC
TCAGATAATGGAATCTCACCCTCAGACTCAGATAACTGAGATGCAACTCC
GACGCCTTTTGCCGCTTTTTCAACACATTCAGCTTCCTGACTTCATGGTT
CAATATATGGTTCGCAGCATCGGTCATAGCTTTCGAGCTTTCAGTCTGAA
GCCCCATCGTGCCAGTGCACCAGCTCACGAAACACGGCAGCATGTCTTGT
GTCAACCTAAGTCACCCGATATGGAACACAGTTTCTATTCTCGATATTTG
GCTGTCGTTGACGACGACGAACTATTCTGGAACATTGTCTGCCGAAATGG
ATTGGCAGACCCTTTAATCCGACTTGTCATGCAAAGTGAGCGCAACATGC
TGGTTCATATTGTGAAGACAATCGCTCGATACATCGAGCCACGAAGAGAA
AATATTGAGACTCTCGCCGATATGTTGAGCGATATTAGTCAGATGATGAC
TACTGGAGAGTGTGATATGTTGCTTCGAGACATGACGAGAATTGACAACT
GGTCCAAAAGGGCTACTATGCTTGTTGCGTCGGTCTGTTTGCATCAAGCG
TTTGAGAGATACGAGACTCAATTGCCGGTCAGGCTTCAATGGGCTCACGT
TGGAAGACAACCTATTACGGAGTTGACCAACACTTCTATTGATGGGATTA
AGTTTGGAGTGCAAGTACACAGCACATTTGACTGTGAAAGCAAGATTGTT
CTGACTTGCCGCGGCGATGAAAACAAATTGTTGACGCTGTATACATCCAT
CCACTTCGTGGCGTGGATAGTGGATACCGACTGTCGATGTGATTCCTTGC
AATTGTTGAGAAGGTTTACTGATGGGTGCTTATTCGCCTTCAACGATGAC
CTGATCAATAAGAGGTCTACAACAGTGTTTTGTCTTATCGAGAGCGTCAC
GTTGTTGAATACGTCCGACGTAAGAAATTGGCGTCTCAAGCATGGAAAGG
ATTGCACAGCACAAATGAAAATACGAATCGAACTGGAACGAAAACAAACG
TGA
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protein sequence of Gchil6851.t1

>Gchil6851.t1 ID=Gchil6851.t1|Name=Gchil6851.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=551bp
MPTVPIPVSPNWRIEPTRNSFVICPTRQYLSRFCADVARLRRFERQIVLV
CSSNSSQSTRDYSVHFSRIIYHGGPLLSHVKSFVEATPDYIVRVPIQDNH
IAFRYVTDYVYASSVNISRLSVSDCVQLALSCSKWKCVDFYVAVLRFLVQ
RNRLITPRQFAVSTPLLWLPQERVAFADYYFLNVQIVMERMHLTQLIDLA
FATHAANRTPLCNRVLAQIMESHPQTQITEMQLRRLLPLFQHIQLPDFMV
QYMVRSIGHSFRAFSLKPHRASAPAHETRQHVLCQPKSPDMEHSFYSRYL
AVVDDDELFWNIVCRNGLADPLIRLVMQSERNMLVHIVKTIARYIEPRRE
NIETLADMLSDISQMMTTGECDMLLRDMTRIDNWSKRATMLVASVCLHQA
FERYETQLPVRLQWAHVGRQPITELTNTSIDGIKFGVQVHSTFDCESKIV
LTCRGDENKLLTLYTSIHFVAWIVDTDCRCDSLQLLRRFTDGCLFAFNDD
LINKRSTTVFCLIESVTLLNTSDVRNWRLKHGKDCTAQMKIRIELERKQT
*
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mRNA from alignment at tig00004376_pilon:421335..422987-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6851.t1 ID=Gchil6851.t1|Name=Gchil6851.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004376_pilon:421335..422987- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGACCGTACCCATCCCCGTGAGTCCTAACTGGCGAATCGAACCAAC
CCGCAATAGCTTCGTCATATGTCCCACTCGCCAATACCTCTCGCGCTTCT
GCGCCGATGTCGCTCGACTTCGCCGTTTTGAACGTCAAATCGTCCTCGTC
TGCTCTTCCAACTCATCGCAATCAACCAGGGATTACTCGGTGCATTTCTC
GCGCATTATCTACCACGGAGGCCCGCTTTTGAGCCATGTCAAATCGTTTG
TAGAAGCTACACCCGACTATATTGTACGAGTCCCAATCCAAGATAACCAT
ATAGCGTTTAGATACGTCACGGACTATGTTTATGCATCCAGTGTAAACAT
CAGTCGCTTATCTGTTTCGGATTGTGTTCAGCTTGCTCTATCCTGTAGCA
AATGGAAGTGTGTCGATTTTTACGTTGCTGTTCTACGCTTTCTTGTGCAA
CGCAACCGTTTAATAACTCCGCGTCAGTTTGCAGTGAGCACCCCGCTTTT
GTGGCTCCCACAAGAGCGAGTAGCTTTCGCTGACTATTACTTTCTTAATG
TCCAAATTGTCATGGAGAGAATGCATCTCACTCAACTGATTGATCTTGCA
TTTGCCACTCATGCAGCAAATCGCACCCCTCTTTGTAATCGCGTGCTTGC
TCAGATAATGGAATCTCACCCTCAGACTCAGATAACTGAGATGCAACTCC
GACGCCTTTTGCCGCTTTTTCAACACATTCAGCTTCCTGACTTCATGGTT
CAATATATGGTTCGCAGCATCGGTCATAGCTTTCGAGCTTTCAGTCTGAA
GCCCCATCGTGCCAGTGCACCAGCTCACGAAACACGGCAGCATGTCTTGT
GTCAACCTAAGTCACCCGATATGGAACACAGTTTCTATTCTCGATATTTG
GCTGTCGTTGACGACGACGAACTATTCTGGAACATTGTCTGCCGAAATGG
ATTGGCAGACCCTTTAATCCGACTTGTCATGCAAAGTGAGCGCAACATGC
TGGTTCATATTGTGAAGACAATCGCTCGATACATCGAGCCACGAAGAGAA
AATATTGAGACTCTCGCCGATATGTTGAGCGATATTAGTCAGATGATGAC
TACTGGAGAGTGTGATATGTTGCTTCGAGACATGACGAGAATTGACAACT
GGTCCAAAAGGGCTACTATGCTTGTTGCGTCGGTCTGTTTGCATCAAGCG
TTTGAGAGATACGAGACTCAATTGCCGGTCAGGCTTCAATGGGCTCACGT
TGGAAGACAACCTATTACGGAGTTGACCAACACTTCTATTGATGGGATTA
AGTTTGGAGTGCAAGTACACAGCACATTTGACTGTGAAAGCAAGATTGTT
CTGACTTGCCGCGGCGATGAAAACAAATTGTTGACGCTGTATACATCCAT
CCACTTCGTGGCGTGGATAGTGGATACCGACTGTCGATGTGATTCCTTGC
AATTGTTGAGAAGGTTTACTGATGGGTGCTTATTCGCCTTCAACGATGAC
CTGATCAATAAGAGGTCTACAACAGTGTTTTGTCTTATCGAGAGCGTCAC
GTTGTTGAATACGTCCGACGTAAGAAATTGGCGTCTCAAGCATGGAAAGG
ATTGCACAGCACAAATGAAAATACGAATCGAACTGGAACGAAAACAAACG
TGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:421335..422987-

>Gchil6851.t1 ID=Gchil6851.t1|Name=Gchil6851.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00004376_pilon:421335..422987- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGACCGTACCCATCCCCGTGAGTCCTAACTGGCGAATCGAACCAAC
CCGCAATAGCTTCGTCATATGTCCCACTCGCCAATACCTCTCGCGCTTCT
GCGCCGATGTCGCTCGACTTCGCCGTTTTGAACGTCAAATCGTCCTCGTC
TGCTCTTCCAACTCATCGCAATCAACCAGGGATTACTCGGTGCATTTCTC
GCGCATTATCTACCACGGAGGCCCGCTTTTGAGCCATGTCAAATCGTTTG
TAGAAGCTACACCCGACTATATTGTACGAGTCCCAATCCAAGATAACCAT
ATAGCGTTTAGATACGTCACGGACTATGTTTATGCATCCAGTGTAAACAT
CAGTCGCTTATCTGTTTCGGATTGTGTTCAGCTTGCTCTATCCTGTAGCA
AATGGAAGTGTGTCGATTTTTACGTTGCTGTTCTACGCTTTCTTGTGCAA
CGCAACCGTTTAATAACTCCGCGTCAGTTTGCAGTGAGCACCCCGCTTTT
GTGGCTCCCACAAGAGCGAGTAGCTTTCGCTGACTATTACTTTCTTAATG
TCCAAATTGTCATGGAGAGAATGCATCTCACTCAACTGATTGATCTTGCA
TTTGCCACTCATGCAGCAAATCGCACCCCTCTTTGTAATCGCGTGCTTGC
TCAGATAATGGAATCTCACCCTCAGACTCAGATAACTGAGATGCAACTCC
GACGCCTTTTGCCGCTTTTTCAACACATTCAGCTTCCTGACTTCATGGTT
CAATATATGGTTCGCAGCATCGGTCATAGCTTTCGAGCTTTCAGTCTGAA
GCCCCATCGTGCCAGTGCACCAGCTCACGAAACACGGCAGCATGTCTTGT
GTCAACCTAAGTCACCCGATATGGAACACAGTTTCTATTCTCGATATTTG
GCTGTCGTTGACGACGACGAACTATTCTGGAACATTGTCTGCCGAAATGG
ATTGGCAGACCCTTTAATCCGACTTGTCATGCAAAGTGAGCGCAACATGC
TGGTTCATATTGTGAAGACAATCGCTCGATACATCGAGCCACGAAGAGAA
AATATTGAGACTCTCGCCGATATGTTGAGCGATATTAGTCAGATGATGAC
TACTGGAGAGTGTGATATGTTGCTTCGAGACATGACGAGAATTGACAACT
GGTCCAAAAGGGCTACTATGCTTGTTGCGTCGGTCTGTTTGCATCAAGCG
TTTGAGAGATACGAGACTCAATTGCCGGTCAGGCTTCAATGGGCTCACGT
TGGAAGACAACCTATTACGGAGTTGACCAACACTTCTATTGATGGGATTA
AGTTTGGAGTGCAAGTACACAGCACATTTGACTGTGAAAGCAAGATTGTT
CTGACTTGCCGCGGCGATGAAAACAAATTGTTGACGCTGTATACATCCAT
CCACTTCGTGGCGTGGATAGTGGATACCGACTGTCGATGTGATTCCTTGC
AATTGTTGAGAAGGTTTACTGATGGGTGCTTATTCGCCTTCAACGATGAC
CTGATCAATAAGAGGTCTACAACAGTGTTTTGTCTTATCGAGAGCGTCAC
GTTGTTGAATACGTCCGACGTAAGAAATTGGCGTCTCAAGCATGGAAAGG
ATTGCACAGCACAAATGAAAATACGAATCGAACTGGAACGAAAACAAACG
TGA
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