Gchil6842.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6842.t1
Unique NameGchil6842.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:369690..370724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF075CT
PFAMsDHHC
Max annot lvl2759|Eukaryota
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035,ko:K16675,ko:K18932,ko:K20027,ko:K20030,ko:K20471
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,ko04391,map00860,map01100,map01110,map04391
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005886,GO:0007275,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0016020,GO:0016049,GO:0021700,GO:0022622,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030154,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035618,GO:0040007,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0060560,GO:0071695,GO:0071944,GO:0080147,GO:0090558,GO:0090627,GO:0097708,GO:0099402,GO:0120025,GO:1905392
Evalue5.76e-46
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
EC1.14.13.81,2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
COG categoryZ
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6842Gchil6842Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 369690..370724 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6842.t1.stop1Gchil6842.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 369690..369692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6842.t1.CDS1Gchil6842.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 369690..370724 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6842.t1.exon1Gchil6842.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 369690..370724 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6842.t1.start1Gchil6842.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 370722..370724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6842.t1Gchil6842.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 369690..370724 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6842.t1 ID=Gchil6842.t1|Name=Gchil6842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=345bp
MGARTTRYAADSAEAGRSRVWCSGLCMTGPDYRGTLLTLLLVLAIFSAEV
AVSFPYLLSHHAVVGLPLLVLLAVSFAITVWSAYLCSTTDPGIVPRSATL
PPSIVAFPNVRERSVEYRGRRVVLRFCDTCRVWRPPRTSHCATCNNCVRR
FDHHCPWLGNDIGLRNYRSYFTFVVFGSISAAVAITTSVLTVHWTTAFFR
AAFPDESYAASIRRSLGHRATWVNLIIVLLCFLGLLFTGGLTGFHLYLMS
NNITTAERFKKRARNSAHVEDDYRGIKSIFFLQCTRRPASAVTEGFFGPA
YPEEDEFIRLIDAQVEEETALMNFQVPTIPTAPPRVVSIPVNRI*
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spliced messenger RNA

>Gchil6842.t1 ID=Gchil6842.t1|Name=Gchil6842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00004376_pilon:369690..370724- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGCGCGCACCACCCGCTATGCCGCCGACTCCGCCGAAGCCGGTCG
CAGCCGCGTTTGGTGCAGCGGCTTATGCATGACCGGTCCCGACTACCGCG
GCACTCTTCTTACTCTTCTTCTTGTGCTCGCCATCTTCTCCGCAGAGGTC
GCCGTATCCTTCCCCTACCTTCTTTCACATCATGCCGTCGTCGGCCTTCC
CTTGCTCGTCCTTCTCGCCGTGTCATTTGCCATCACCGTGTGGTCCGCCT
ATCTTTGTTCCACAACCGATCCAGGAATTGTTCCGCGCTCTGCAACCCTT
CCGCCCTCCATTGTTGCATTCCCCAATGTGCGCGAGAGAAGCGTTGAGTA
CCGCGGTCGCCGCGTTGTTCTCCGTTTTTGCGACACATGCCGCGTGTGGC
GTCCTCCGCGTACCTCGCATTGTGCTACTTGTAACAATTGCGTACGTCGC
TTCGATCATCACTGCCCGTGGCTGGGCAACGATATCGGTCTACGCAACTA
CCGAAGTTACTTTACCTTTGTCGTCTTTGGTTCTATATCCGCAGCCGTTG
CAATCACCACCTCTGTACTAACTGTTCACTGGACAACCGCCTTCTTCCGA
GCCGCCTTTCCCGACGAATCGTACGCTGCATCAATACGCCGTTCCCTAGG
CCATCGAGCCACTTGGGTCAATTTAATCATCGTTCTCTTGTGCTTTCTAG
GGCTGCTTTTCACCGGAGGGTTAACAGGCTTTCATCTGTACCTCATGTCC
AACAATATCACCACAGCAGAGCGCTTCAAGAAACGTGCTAGAAATTCCGC
ACACGTCGAAGACGACTACCGCGGCATCAAGTCTATCTTTTTTTTGCAAT
GCACGCGTCGTCCAGCAAGCGCTGTCACAGAAGGCTTTTTTGGCCCCGCT
TATCCCGAAGAAGATGAGTTTATTCGACTAATTGACGCACAAGTGGAAGA
AGAAACAGCTCTCATGAACTTCCAAGTACCAACCATACCCACAGCCCCGC
CGCGTGTCGTATCGATACCGGTAAATCGCATCTAA
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protein sequence of Gchil6842.t1

>Gchil6842.t1 ID=Gchil6842.t1|Name=Gchil6842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=345bp
MGARTTRYAADSAEAGRSRVWCSGLCMTGPDYRGTLLTLLLVLAIFSAEV
AVSFPYLLSHHAVVGLPLLVLLAVSFAITVWSAYLCSTTDPGIVPRSATL
PPSIVAFPNVRERSVEYRGRRVVLRFCDTCRVWRPPRTSHCATCNNCVRR
FDHHCPWLGNDIGLRNYRSYFTFVVFGSISAAVAITTSVLTVHWTTAFFR
AAFPDESYAASIRRSLGHRATWVNLIIVLLCFLGLLFTGGLTGFHLYLMS
NNITTAERFKKRARNSAHVEDDYRGIKSIFFLQCTRRPASAVTEGFFGPA
YPEEDEFIRLIDAQVEEETALMNFQVPTIPTAPPRVVSIPVNRI*
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mRNA from alignment at tig00004376_pilon:369690..370724-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6842.t1 ID=Gchil6842.t1|Name=Gchil6842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00004376_pilon:369690..370724- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGCGCGCACCACCCGCTATGCCGCCGACTCCGCCGAAGCCGGTCG
CAGCCGCGTTTGGTGCAGCGGCTTATGCATGACCGGTCCCGACTACCGCG
GCACTCTTCTTACTCTTCTTCTTGTGCTCGCCATCTTCTCCGCAGAGGTC
GCCGTATCCTTCCCCTACCTTCTTTCACATCATGCCGTCGTCGGCCTTCC
CTTGCTCGTCCTTCTCGCCGTGTCATTTGCCATCACCGTGTGGTCCGCCT
ATCTTTGTTCCACAACCGATCCAGGAATTGTTCCGCGCTCTGCAACCCTT
CCGCCCTCCATTGTTGCATTCCCCAATGTGCGCGAGAGAAGCGTTGAGTA
CCGCGGTCGCCGCGTTGTTCTCCGTTTTTGCGACACATGCCGCGTGTGGC
GTCCTCCGCGTACCTCGCATTGTGCTACTTGTAACAATTGCGTACGTCGC
TTCGATCATCACTGCCCGTGGCTGGGCAACGATATCGGTCTACGCAACTA
CCGAAGTTACTTTACCTTTGTCGTCTTTGGTTCTATATCCGCAGCCGTTG
CAATCACCACCTCTGTACTAACTGTTCACTGGACAACCGCCTTCTTCCGA
GCCGCCTTTCCCGACGAATCGTACGCTGCATCAATACGCCGTTCCCTAGG
CCATCGAGCCACTTGGGTCAATTTAATCATCGTTCTCTTGTGCTTTCTAG
GGCTGCTTTTCACCGGAGGGTTAACAGGCTTTCATCTGTACCTCATGTCC
AACAATATCACCACAGCAGAGCGCTTCAAGAAACGTGCTAGAAATTCCGC
ACACGTCGAAGACGACTACCGCGGCATCAAGTCTATCTTTTTTTTGCAAT
GCACGCGTCGTCCAGCAAGCGCTGTCACAGAAGGCTTTTTTGGCCCCGCT
TATCCCGAAGAAGATGAGTTTATTCGACTAATTGACGCACAAGTGGAAGA
AGAAACAGCTCTCATGAACTTCCAAGTACCAACCATACCCACAGCCCCGC
CGCGTGTCGTATCGATACCGGTAAATCGCATCTAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:369690..370724-

>Gchil6842.t1 ID=Gchil6842.t1|Name=Gchil6842.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00004376_pilon:369690..370724- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGCGCGCACCACCCGCTATGCCGCCGACTCCGCCGAAGCCGGTCG
CAGCCGCGTTTGGTGCAGCGGCTTATGCATGACCGGTCCCGACTACCGCG
GCACTCTTCTTACTCTTCTTCTTGTGCTCGCCATCTTCTCCGCAGAGGTC
GCCGTATCCTTCCCCTACCTTCTTTCACATCATGCCGTCGTCGGCCTTCC
CTTGCTCGTCCTTCTCGCCGTGTCATTTGCCATCACCGTGTGGTCCGCCT
ATCTTTGTTCCACAACCGATCCAGGAATTGTTCCGCGCTCTGCAACCCTT
CCGCCCTCCATTGTTGCATTCCCCAATGTGCGCGAGAGAAGCGTTGAGTA
CCGCGGTCGCCGCGTTGTTCTCCGTTTTTGCGACACATGCCGCGTGTGGC
GTCCTCCGCGTACCTCGCATTGTGCTACTTGTAACAATTGCGTACGTCGC
TTCGATCATCACTGCCCGTGGCTGGGCAACGATATCGGTCTACGCAACTA
CCGAAGTTACTTTACCTTTGTCGTCTTTGGTTCTATATCCGCAGCCGTTG
CAATCACCACCTCTGTACTAACTGTTCACTGGACAACCGCCTTCTTCCGA
GCCGCCTTTCCCGACGAATCGTACGCTGCATCAATACGCCGTTCCCTAGG
CCATCGAGCCACTTGGGTCAATTTAATCATCGTTCTCTTGTGCTTTCTAG
GGCTGCTTTTCACCGGAGGGTTAACAGGCTTTCATCTGTACCTCATGTCC
AACAATATCACCACAGCAGAGCGCTTCAAGAAACGTGCTAGAAATTCCGC
ACACGTCGAAGACGACTACCGCGGCATCAAGTCTATCTTTTTTTTGCAAT
GCACGCGTCGTCCAGCAAGCGCTGTCACAGAAGGCTTTTTTGGCCCCGCT
TATCCCGAAGAAGATGAGTTTATTCGACTAATTGACGCACAAGTGGAAGA
AGAAACAGCTCTCATGAACTTCCAAGTACCAACCATACCCACAGCCCCGC
CGCGTGTCGTATCGATACCGGTAAATCGCATCTAA
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