Gchil6830.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6830.t1
Unique NameGchil6830.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length622
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:124257..126122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMG035CT
PFAMsLRR_6,WPP
Max annot lvl2759|Eukaryota
KEGG koko:K02909,ko:K14319
KEGG Pathwayko03010,ko03013,map03010,map03013
KEGG ModuleM00178,M00427
Evalue4.92e-23
EggNOG OGsCOG5238@1|root,KOG1909@2759|Eukaryota
DescriptionGTPase activator activity
COG categoryAT
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6830Gchil6830Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 124257..126122 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6830.t1.stop1Gchil6830.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 124257..124259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6830.t1.CDS1Gchil6830.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 124257..126122 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6830.t1.exon1Gchil6830.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 124257..126122 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6830.t1.start1Gchil6830.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 126120..126122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6830.t1Gchil6830.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 124257..126122 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6830.t1 ID=Gchil6830.t1|Name=Gchil6830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=622bp
MSSTSPTPKTFKLSPPSRQVLSRKLAAKLFEPLSQQPYTTINLSGAALGD
AAVSQAGPHLIALGKMKCLETVILSDIVASLSQEDALRSLNAISSSIGIC
KQLRSVDLSHNALGSNGIAACRALLAKQPHLEKVFLSEAGLAAESVRLLC
DFLQPCVNNLRVLDIHGNRVESVGLERMAALIEKTPRIQRLRLSSLGASP
SAICTLARALRVTNSLAELDLSDNRMDTNAASLLADVLSNQSNLSRLALS
DLNMGIEALHALLTPLAQASHGVAELLLAGNELSCEAVPTLRAYIVAHAT
SLRVLDVSHNELGGDGITTLAKAFKDSTEQPALTRLLVAHNEATPLSIVL
LAQNIVKLPALCRFDVRGTDLALDTVQILRNSFRGADVLADERQESTDEV
IVQSALQTLSDIADIRGQRESKSEDSAPRSTMSKLVSMFSQRTSEEEEVE
DPAMEVRQISEAEALREPGSATHCGVSETATFAGESATPINDEMYTPSRA
STTTTNMTPECLEQDIIQSARKLKRTVASLNREVFDATGELKLDEDSEGR
SGGAGTIYSKRGDDGEDYELISDILVDRQKQGWCSWFVELLGGLLFALFL
IMLILGVMQWQEDVVPSLRPM*
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spliced messenger RNA

>Gchil6830.t1 ID=Gchil6830.t1|Name=Gchil6830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00004376_pilon:124257..126122- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCAACGTCGCCCACTCCAAAGACCTTTAAATTATCTCCACCCTC
CCGTCAGGTACTGTCTCGAAAATTGGCCGCCAAGTTGTTTGAGCCGCTCT
CACAACAACCGTACACCACCATCAATCTCTCGGGCGCCGCGTTGGGAGAT
GCTGCCGTCAGTCAGGCTGGGCCTCATCTGATTGCACTCGGTAAGATGAA
ATGTTTGGAAACCGTAATTCTTTCCGATATTGTCGCCTCTCTGTCGCAGG
AAGATGCTTTGCGATCCCTCAATGCCATCTCGTCGTCAATTGGCATTTGT
AAGCAGTTACGCTCCGTTGACCTTTCTCACAATGCTTTGGGAAGTAATGG
GATTGCTGCATGTAGGGCGTTGCTTGCTAAACAGCCACACTTGGAAAAGG
TGTTTCTATCTGAAGCGGGACTTGCCGCCGAGTCCGTGCGTCTATTATGC
GACTTTCTTCAACCATGTGTAAATAATTTGCGAGTCCTCGATATTCATGG
AAACCGAGTCGAATCCGTTGGACTCGAGCGCATGGCAGCCTTGATTGAGA
AGACACCACGCATTCAAAGACTTCGTCTTTCTTCTTTAGGTGCATCCCCA
AGTGCCATTTGTACCTTGGCAAGAGCACTACGGGTCACAAATTCTCTTGC
AGAACTTGACCTTTCTGATAACAGAATGGATACCAATGCAGCCTCGCTTC
TTGCCGACGTGCTATCGAATCAATCTAACCTTTCCCGACTAGCGCTTTCA
GATCTCAACATGGGTATCGAAGCCTTACACGCGTTACTCACACCGCTTGC
GCAAGCTTCACATGGTGTGGCCGAGTTATTGTTGGCTGGAAACGAACTTA
GTTGTGAGGCAGTGCCGACTCTTCGGGCCTATATTGTGGCTCACGCAACC
AGTCTTCGCGTCTTGGATGTGTCACACAATGAACTGGGAGGAGATGGGAT
AACTACGCTCGCAAAGGCTTTCAAAGACTCTACGGAACAACCAGCTCTCA
CGAGACTTTTAGTCGCACACAATGAAGCGACGCCACTTTCAATTGTTTTG
CTTGCTCAAAACATCGTGAAACTTCCAGCCCTGTGTCGGTTTGATGTGCG
CGGTACCGATTTGGCACTCGATACTGTACAGATTCTTCGAAATTCTTTTC
GAGGTGCCGATGTTTTGGCAGATGAGAGGCAGGAGTCTACCGATGAAGTT
ATCGTACAAAGCGCACTGCAGACCCTTTCGGATATAGCGGACATTCGTGG
TCAGAGGGAGAGTAAATCCGAAGACAGTGCACCGCGGTCTACGATGTCGA
AGCTGGTGTCGATGTTTTCTCAACGAACGTCAGAAGAAGAGGAAGTTGAA
GACCCTGCGATGGAAGTGCGGCAGATATCTGAAGCGGAAGCTCTTCGGGA
ACCTGGCAGCGCAACCCATTGTGGGGTTTCAGAAACTGCAACATTTGCGG
GAGAAAGCGCGACGCCGATCAATGACGAGATGTATACTCCTTCGCGAGCA
AGTACGACAACAACGAATATGACTCCAGAATGTTTGGAGCAAGATATTAT
TCAGTCAGCCAGGAAATTAAAGCGTACCGTGGCTTCGTTAAACAGAGAGG
TGTTCGATGCCACGGGTGAGTTGAAGTTAGATGAGGACAGTGAAGGGCGG
AGCGGGGGTGCAGGCACGATTTATTCGAAGAGAGGCGACGATGGAGAAGA
TTATGAACTGATAAGTGATATTCTGGTGGATAGACAAAAACAGGGCTGGT
GTAGTTGGTTTGTAGAACTGTTAGGCGGGTTGTTGTTTGCGTTATTCCTT
ATCATGCTAATCCTCGGTGTGATGCAGTGGCAAGAAGATGTCGTTCCATC
ACTGAGACCGATGTAG
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protein sequence of Gchil6830.t1

>Gchil6830.t1 ID=Gchil6830.t1|Name=Gchil6830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=622bp
MSSTSPTPKTFKLSPPSRQVLSRKLAAKLFEPLSQQPYTTINLSGAALGD
AAVSQAGPHLIALGKMKCLETVILSDIVASLSQEDALRSLNAISSSIGIC
KQLRSVDLSHNALGSNGIAACRALLAKQPHLEKVFLSEAGLAAESVRLLC
DFLQPCVNNLRVLDIHGNRVESVGLERMAALIEKTPRIQRLRLSSLGASP
SAICTLARALRVTNSLAELDLSDNRMDTNAASLLADVLSNQSNLSRLALS
DLNMGIEALHALLTPLAQASHGVAELLLAGNELSCEAVPTLRAYIVAHAT
SLRVLDVSHNELGGDGITTLAKAFKDSTEQPALTRLLVAHNEATPLSIVL
LAQNIVKLPALCRFDVRGTDLALDTVQILRNSFRGADVLADERQESTDEV
IVQSALQTLSDIADIRGQRESKSEDSAPRSTMSKLVSMFSQRTSEEEEVE
DPAMEVRQISEAEALREPGSATHCGVSETATFAGESATPINDEMYTPSRA
STTTTNMTPECLEQDIIQSARKLKRTVASLNREVFDATGELKLDEDSEGR
SGGAGTIYSKRGDDGEDYELISDILVDRQKQGWCSWFVELLGGLLFALFL
IMLILGVMQWQEDVVPSLRPM*
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mRNA from alignment at tig00004376_pilon:124257..126122-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6830.t1 ID=Gchil6830.t1|Name=Gchil6830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at tig00004376_pilon:124257..126122- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCAACGTCGCCCACTCCAAAGACCTTTAAATTATCTCCACCCTC
CCGTCAGGTACTGTCTCGAAAATTGGCCGCCAAGTTGTTTGAGCCGCTCT
CACAACAACCGTACACCACCATCAATCTCTCGGGCGCCGCGTTGGGAGAT
GCTGCCGTCAGTCAGGCTGGGCCTCATCTGATTGCACTCGGTAAGATGAA
ATGTTTGGAAACCGTAATTCTTTCCGATATTGTCGCCTCTCTGTCGCAGG
AAGATGCTTTGCGATCCCTCAATGCCATCTCGTCGTCAATTGGCATTTGT
AAGCAGTTACGCTCCGTTGACCTTTCTCACAATGCTTTGGGAAGTAATGG
GATTGCTGCATGTAGGGCGTTGCTTGCTAAACAGCCACACTTGGAAAAGG
TGTTTCTATCTGAAGCGGGACTTGCCGCCGAGTCCGTGCGTCTATTATGC
GACTTTCTTCAACCATGTGTAAATAATTTGCGAGTCCTCGATATTCATGG
AAACCGAGTCGAATCCGTTGGACTCGAGCGCATGGCAGCCTTGATTGAGA
AGACACCACGCATTCAAAGACTTCGTCTTTCTTCTTTAGGTGCATCCCCA
AGTGCCATTTGTACCTTGGCAAGAGCACTACGGGTCACAAATTCTCTTGC
AGAACTTGACCTTTCTGATAACAGAATGGATACCAATGCAGCCTCGCTTC
TTGCCGACGTGCTATCGAATCAATCTAACCTTTCCCGACTAGCGCTTTCA
GATCTCAACATGGGTATCGAAGCCTTACACGCGTTACTCACACCGCTTGC
GCAAGCTTCACATGGTGTGGCCGAGTTATTGTTGGCTGGAAACGAACTTA
GTTGTGAGGCAGTGCCGACTCTTCGGGCCTATATTGTGGCTCACGCAACC
AGTCTTCGCGTCTTGGATGTGTCACACAATGAACTGGGAGGAGATGGGAT
AACTACGCTCGCAAAGGCTTTCAAAGACTCTACGGAACAACCAGCTCTCA
CGAGACTTTTAGTCGCACACAATGAAGCGACGCCACTTTCAATTGTTTTG
CTTGCTCAAAACATCGTGAAACTTCCAGCCCTGTGTCGGTTTGATGTGCG
CGGTACCGATTTGGCACTCGATACTGTACAGATTCTTCGAAATTCTTTTC
GAGGTGCCGATGTTTTGGCAGATGAGAGGCAGGAGTCTACCGATGAAGTT
ATCGTACAAAGCGCACTGCAGACCCTTTCGGATATAGCGGACATTCGTGG
TCAGAGGGAGAGTAAATCCGAAGACAGTGCACCGCGGTCTACGATGTCGA
AGCTGGTGTCGATGTTTTCTCAACGAACGTCAGAAGAAGAGGAAGTTGAA
GACCCTGCGATGGAAGTGCGGCAGATATCTGAAGCGGAAGCTCTTCGGGA
ACCTGGCAGCGCAACCCATTGTGGGGTTTCAGAAACTGCAACATTTGCGG
GAGAAAGCGCGACGCCGATCAATGACGAGATGTATACTCCTTCGCGAGCA
AGTACGACAACAACGAATATGACTCCAGAATGTTTGGAGCAAGATATTAT
TCAGTCAGCCAGGAAATTAAAGCGTACCGTGGCTTCGTTAAACAGAGAGG
TGTTCGATGCCACGGGTGAGTTGAAGTTAGATGAGGACAGTGAAGGGCGG
AGCGGGGGTGCAGGCACGATTTATTCGAAGAGAGGCGACGATGGAGAAGA
TTATGAACTGATAAGTGATATTCTGGTGGATAGACAAAAACAGGGCTGGT
GTAGTTGGTTTGTAGAACTGTTAGGCGGGTTGTTGTTTGCGTTATTCCTT
ATCATGCTAATCCTCGGTGTGATGCAGTGGCAAGAAGATGTCGTTCCATC
ACTGAGACCGATGTAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:124257..126122-

>Gchil6830.t1 ID=Gchil6830.t1|Name=Gchil6830.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1866bp|location=Sequence derived from alignment at tig00004376_pilon:124257..126122- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCAACGTCGCCCACTCCAAAGACCTTTAAATTATCTCCACCCTC
CCGTCAGGTACTGTCTCGAAAATTGGCCGCCAAGTTGTTTGAGCCGCTCT
CACAACAACCGTACACCACCATCAATCTCTCGGGCGCCGCGTTGGGAGAT
GCTGCCGTCAGTCAGGCTGGGCCTCATCTGATTGCACTCGGTAAGATGAA
ATGTTTGGAAACCGTAATTCTTTCCGATATTGTCGCCTCTCTGTCGCAGG
AAGATGCTTTGCGATCCCTCAATGCCATCTCGTCGTCAATTGGCATTTGT
AAGCAGTTACGCTCCGTTGACCTTTCTCACAATGCTTTGGGAAGTAATGG
GATTGCTGCATGTAGGGCGTTGCTTGCTAAACAGCCACACTTGGAAAAGG
TGTTTCTATCTGAAGCGGGACTTGCCGCCGAGTCCGTGCGTCTATTATGC
GACTTTCTTCAACCATGTGTAAATAATTTGCGAGTCCTCGATATTCATGG
AAACCGAGTCGAATCCGTTGGACTCGAGCGCATGGCAGCCTTGATTGAGA
AGACACCACGCATTCAAAGACTTCGTCTTTCTTCTTTAGGTGCATCCCCA
AGTGCCATTTGTACCTTGGCAAGAGCACTACGGGTCACAAATTCTCTTGC
AGAACTTGACCTTTCTGATAACAGAATGGATACCAATGCAGCCTCGCTTC
TTGCCGACGTGCTATCGAATCAATCTAACCTTTCCCGACTAGCGCTTTCA
GATCTCAACATGGGTATCGAAGCCTTACACGCGTTACTCACACCGCTTGC
GCAAGCTTCACATGGTGTGGCCGAGTTATTGTTGGCTGGAAACGAACTTA
GTTGTGAGGCAGTGCCGACTCTTCGGGCCTATATTGTGGCTCACGCAACC
AGTCTTCGCGTCTTGGATGTGTCACACAATGAACTGGGAGGAGATGGGAT
AACTACGCTCGCAAAGGCTTTCAAAGACTCTACGGAACAACCAGCTCTCA
CGAGACTTTTAGTCGCACACAATGAAGCGACGCCACTTTCAATTGTTTTG
CTTGCTCAAAACATCGTGAAACTTCCAGCCCTGTGTCGGTTTGATGTGCG
CGGTACCGATTTGGCACTCGATACTGTACAGATTCTTCGAAATTCTTTTC
GAGGTGCCGATGTTTTGGCAGATGAGAGGCAGGAGTCTACCGATGAAGTT
ATCGTACAAAGCGCACTGCAGACCCTTTCGGATATAGCGGACATTCGTGG
TCAGAGGGAGAGTAAATCCGAAGACAGTGCACCGCGGTCTACGATGTCGA
AGCTGGTGTCGATGTTTTCTCAACGAACGTCAGAAGAAGAGGAAGTTGAA
GACCCTGCGATGGAAGTGCGGCAGATATCTGAAGCGGAAGCTCTTCGGGA
ACCTGGCAGCGCAACCCATTGTGGGGTTTCAGAAACTGCAACATTTGCGG
GAGAAAGCGCGACGCCGATCAATGACGAGATGTATACTCCTTCGCGAGCA
AGTACGACAACAACGAATATGACTCCAGAATGTTTGGAGCAAGATATTAT
TCAGTCAGCCAGGAAATTAAAGCGTACCGTGGCTTCGTTAAACAGAGAGG
TGTTCGATGCCACGGGTGAGTTGAAGTTAGATGAGGACAGTGAAGGGCGG
AGCGGGGGTGCAGGCACGATTTATTCGAAGAGAGGCGACGATGGAGAAGA
TTATGAACTGATAAGTGATATTCTGGTGGATAGACAAAAACAGGGCTGGT
GTAGTTGGTTTGTAGAACTGTTAGGCGGGTTGTTGTTTGCGTTATTCCTT
ATCATGCTAATCCTCGGTGTGATGCAGTGGCAAGAAGATGTCGTTCCATC
ACTGAGACCGATGTAG
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