Gchil6819.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6819.t1
Unique NameGchil6819.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length405
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:50761..51975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6819Gchil6819Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 50761..51975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6819.t1.start1Gchil6819.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 50761..50763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6819.t1.CDS1Gchil6819.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 50761..51975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6819.t1.exon1Gchil6819.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 50761..51975 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6819.t1.stop1Gchil6819.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 51973..51975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6819.t1Gchil6819.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 50761..51975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6819.t1 ID=Gchil6819.t1|Name=Gchil6819.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=405bp
MSQPLSDVIIPPTPTPPRTKPLSRRSSDCSAALLRSRSQEPLRHLATAAG
IIGAASRSVLTTFHLTDPLTPSDAVILAEWSAPSGFTIRSLSMSPDASVI
ALVLADQRSAVLTLLRPRSLSLLLRVALPWSKHRDVHQVFFSHAALTLRD
DQKLRQNMLPQHLHAAFLDAQKTTSSCAAVPKAPPSQKEIAAPYALAVAL
DLLLVYSFSVCYTRLHAFSSHRSPNTSANLFSLPTLPTKHYTPVLHDNAF
LHTLQNPLLPISDLRIIKLLALCRKPPALLALVQLPSEKLAASVFLEQSV
MITPLTVRNSGGVLFAVCKNGGCLLETAIRDVYRIADVSFDKTIGLRVFA
LPRKEKEQAVTIGVHQIRGNQLSCLVHQNDNVIRLFAAHDVINVEALPCK
LPFL*
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spliced messenger RNA

>Gchil6819.t1 ID=Gchil6819.t1|Name=Gchil6819.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00004376_pilon:50761..51975+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCAGCCGCTGTCCGACGTCATCATACCCCCCACGCCCACACCCCC
GCGAACCAAACCGCTGTCCCGCCGCTCGTCTGACTGCTCGGCCGCTCTCC
TGCGCTCCCGCTCCCAAGAGCCGCTGCGTCACCTGGCAACCGCCGCCGGC
ATCATTGGCGCAGCTTCTCGTTCCGTCTTGACTACCTTCCATTTAACAGA
TCCCCTCACCCCTTCCGACGCCGTCATCCTGGCAGAATGGTCCGCCCCTT
CTGGCTTCACGATTCGCTCCCTGTCCATGTCGCCCGATGCCTCCGTCATA
GCGCTAGTTTTGGCTGACCAACGTTCGGCCGTTCTAACTCTTCTCCGTCC
ACGTTCACTCAGTCTTTTGCTGCGCGTCGCGCTTCCGTGGTCAAAGCATC
GCGACGTCCACCAGGTGTTCTTTTCACACGCTGCCCTCACCCTTCGCGAC
GATCAAAAGCTCAGACAAAACATGCTGCCACAACATTTGCACGCTGCATT
TCTCGATGCGCAGAAAACAACTTCTTCGTGCGCAGCTGTTCCTAAAGCGC
CCCCGTCGCAAAAAGAAATCGCTGCCCCTTATGCACTCGCTGTCGCGCTT
GATCTCTTGCTTGTTTACTCCTTTAGTGTGTGTTACACTCGACTTCACGC
CTTTTCCTCACATCGAAGCCCCAACACCAGCGCAAACCTCTTTTCGTTGC
CCACGCTGCCGACGAAACATTACACCCCCGTGTTACACGACAATGCCTTT
CTGCACACACTTCAAAACCCTCTCCTCCCTATCTCAGATCTTCGTATCAT
AAAGTTGCTCGCTCTTTGCCGAAAACCTCCTGCGCTACTGGCCCTCGTTC
AATTACCATCCGAAAAACTGGCCGCATCTGTCTTTCTGGAGCAATCGGTC
ATGATTACCCCTCTCACCGTGCGTAATTCTGGAGGGGTGCTATTTGCCGT
TTGTAAGAATGGAGGCTGCCTTCTTGAAACCGCAATACGAGACGTTTATC
GAATTGCTGATGTCAGCTTTGACAAAACCATAGGTCTGCGAGTTTTCGCA
TTGCCAAGGAAAGAAAAAGAACAAGCGGTGACGATTGGTGTTCATCAAAT
ACGAGGAAATCAACTTTCGTGCCTCGTACATCAGAATGACAACGTAATTA
GACTCTTCGCCGCACATGATGTAATTAATGTCGAAGCTCTACCGTGCAAG
CTGCCCTTTCTCTAA
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protein sequence of Gchil6819.t1

>Gchil6819.t1 ID=Gchil6819.t1|Name=Gchil6819.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=405bp
MSQPLSDVIIPPTPTPPRTKPLSRRSSDCSAALLRSRSQEPLRHLATAAG
IIGAASRSVLTTFHLTDPLTPSDAVILAEWSAPSGFTIRSLSMSPDASVI
ALVLADQRSAVLTLLRPRSLSLLLRVALPWSKHRDVHQVFFSHAALTLRD
DQKLRQNMLPQHLHAAFLDAQKTTSSCAAVPKAPPSQKEIAAPYALAVAL
DLLLVYSFSVCYTRLHAFSSHRSPNTSANLFSLPTLPTKHYTPVLHDNAF
LHTLQNPLLPISDLRIIKLLALCRKPPALLALVQLPSEKLAASVFLEQSV
MITPLTVRNSGGVLFAVCKNGGCLLETAIRDVYRIADVSFDKTIGLRVFA
LPRKEKEQAVTIGVHQIRGNQLSCLVHQNDNVIRLFAAHDVINVEALPCK
LPFL*
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mRNA from alignment at tig00004376_pilon:50761..51975+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6819.t1 ID=Gchil6819.t1|Name=Gchil6819.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1215bp|location=Sequence derived from alignment at tig00004376_pilon:50761..51975+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCAGCCGCTGTCCGACGTCATCATACCCCCCACGCCCACACCCCC
GCGAACCAAACCGCTGTCCCGCCGCTCGTCTGACTGCTCGGCCGCTCTCC
TGCGCTCCCGCTCCCAAGAGCCGCTGCGTCACCTGGCAACCGCCGCCGGC
ATCATTGGCGCAGCTTCTCGTTCCGTCTTGACTACCTTCCATTTAACAGA
TCCCCTCACCCCTTCCGACGCCGTCATCCTGGCAGAATGGTCCGCCCCTT
CTGGCTTCACGATTCGCTCCCTGTCCATGTCGCCCGATGCCTCCGTCATA
GCGCTAGTTTTGGCTGACCAACGTTCGGCCGTTCTAACTCTTCTCCGTCC
ACGTTCACTCAGTCTTTTGCTGCGCGTCGCGCTTCCGTGGTCAAAGCATC
GCGACGTCCACCAGGTGTTCTTTTCACACGCTGCCCTCACCCTTCGCGAC
GATCAAAAGCTCAGACAAAACATGCTGCCACAACATTTGCACGCTGCATT
TCTCGATGCGCAGAAAACAACTTCTTCGTGCGCAGCTGTTCCTAAAGCGC
CCCCGTCGCAAAAAGAAATCGCTGCCCCTTATGCACTCGCTGTCGCGCTT
GATCTCTTGCTTGTTTACTCCTTTAGTGTGTGTTACACTCGACTTCACGC
CTTTTCCTCACATCGAAGCCCCAACACCAGCGCAAACCTCTTTTCGTTGC
CCACGCTGCCGACGAAACATTACACCCCCGTGTTACACGACAATGCCTTT
CTGCACACACTTCAAAACCCTCTCCTCCCTATCTCAGATCTTCGTATCAT
AAAGTTGCTCGCTCTTTGCCGAAAACCTCCTGCGCTACTGGCCCTCGTTC
AATTACCATCCGAAAAACTGGCCGCATCTGTCTTTCTGGAGCAATCGGTC
ATGATTACCCCTCTCACCGTGCGTAATTCTGGAGGGGTGCTATTTGCCGT
TTGTAAGAATGGAGGCTGCCTTCTTGAAACCGCAATACGAGACGTTTATC
GAATTGCTGATGTCAGCTTTGACAAAACCATAGGTCTGCGAGTTTTCGCA
TTGCCAAGGAAAGAAAAAGAACAAGCGGTGACGATTGGTGTTCATCAAAT
ACGAGGAAATCAACTTTCGTGCCTCGTACATCAGAATGACAACGTAATTA
GACTCTTCGCCGCACATGATGTAATTAATGTCGAAGCTCTACCGTGCAAG
CTGCCCTTTCTCTAA
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Coding sequence (CDS) from alignment at tig00004376_pilon:50761..51975+

>Gchil6819.t1 ID=Gchil6819.t1|Name=Gchil6819.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1215bp|location=Sequence derived from alignment at tig00004376_pilon:50761..51975+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCAGCCGCTGTCCGACGTCATCATACCCCCCACGCCCACACCCCC
GCGAACCAAACCGCTGTCCCGCCGCTCGTCTGACTGCTCGGCCGCTCTCC
TGCGCTCCCGCTCCCAAGAGCCGCTGCGTCACCTGGCAACCGCCGCCGGC
ATCATTGGCGCAGCTTCTCGTTCCGTCTTGACTACCTTCCATTTAACAGA
TCCCCTCACCCCTTCCGACGCCGTCATCCTGGCAGAATGGTCCGCCCCTT
CTGGCTTCACGATTCGCTCCCTGTCCATGTCGCCCGATGCCTCCGTCATA
GCGCTAGTTTTGGCTGACCAACGTTCGGCCGTTCTAACTCTTCTCCGTCC
ACGTTCACTCAGTCTTTTGCTGCGCGTCGCGCTTCCGTGGTCAAAGCATC
GCGACGTCCACCAGGTGTTCTTTTCACACGCTGCCCTCACCCTTCGCGAC
GATCAAAAGCTCAGACAAAACATGCTGCCACAACATTTGCACGCTGCATT
TCTCGATGCGCAGAAAACAACTTCTTCGTGCGCAGCTGTTCCTAAAGCGC
CCCCGTCGCAAAAAGAAATCGCTGCCCCTTATGCACTCGCTGTCGCGCTT
GATCTCTTGCTTGTTTACTCCTTTAGTGTGTGTTACACTCGACTTCACGC
CTTTTCCTCACATCGAAGCCCCAACACCAGCGCAAACCTCTTTTCGTTGC
CCACGCTGCCGACGAAACATTACACCCCCGTGTTACACGACAATGCCTTT
CTGCACACACTTCAAAACCCTCTCCTCCCTATCTCAGATCTTCGTATCAT
AAAGTTGCTCGCTCTTTGCCGAAAACCTCCTGCGCTACTGGCCCTCGTTC
AATTACCATCCGAAAAACTGGCCGCATCTGTCTTTCTGGAGCAATCGGTC
ATGATTACCCCTCTCACCGTGCGTAATTCTGGAGGGGTGCTATTTGCCGT
TTGTAAGAATGGAGGCTGCCTTCTTGAAACCGCAATACGAGACGTTTATC
GAATTGCTGATGTCAGCTTTGACAAAACCATAGGTCTGCGAGTTTTCGCA
TTGCCAAGGAAAGAAAAAGAACAAGCGGTGACGATTGGTGTTCATCAAAT
ACGAGGAAATCAACTTTCGTGCCTCGTACATCAGAATGACAACGTAATTA
GACTCTTCGCCGCACATGATGTAATTAATGTCGAAGCTCTACCGTGCAAG
CTGCCCTTTCTCTAA
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