Gchil6818.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6818.t1
Unique NameGchil6818.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length414
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:49081..50322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705449.1
Max annot lvl2759|Eukaryota
Evalue7.34e-48
EggNOG OGs2E1U7@1|root,2S947@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6818Gchil6818Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 49081..50322 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6818.t1.stop1Gchil6818.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 49081..49083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6818.t1.CDS1Gchil6818.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 49081..50322 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6818.t1.exon1Gchil6818.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 49081..50322 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6818.t1.start1Gchil6818.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 50320..50322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6818.t1Gchil6818.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 49081..50322 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6818.t1 ID=Gchil6818.t1|Name=Gchil6818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp
MHRRGLPAAFSPALPVLLSRHNEPLPTLLSVRRRPTVTFSSHAVTTTVSS
SSQHHYDSHATSSHNPQTPKLPSSTIRVASARAISPMRRPDGDRFTEMQP
LPSQRRTDLMAPKTVGFWSIIPYMAASAVMVGAAWIAKKRFTARQAALVD
EFGQVIVLYGTTPEAKREIASEYKRKLGPGILRGAMFSSYLATLVAEKAI
IPSTIQEVSMVKKLLRVGDDKAIKAVNNLAATMSDSPSLLGKLLFITERI
LSPEKTAALQLVPLFPYSASTVADLQKNMLERCYRDFVTNEIENNQVEEV
PLAAAAALRLDEAHAKLLFDGVVKDRVRRLKEEAAKAEAAEAEEAAKLSV
EDLDYPARSGEPAKATVHAYQCSDCGYTLFPAAGREFKFYGDDFVCPACG
APKDKFVDVNAEE*
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spliced messenger RNA

>Gchil6818.t1 ID=Gchil6818.t1|Name=Gchil6818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00004376_pilon:49081..50322- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCGTCGCGGCCTACCTGCCGCCTTCTCGCCTGCGTTGCCGGTGCT
TTTGTCGCGACATAACGAGCCTCTCCCAACTCTTCTATCCGTGCGTCGCC
GTCCCACTGTCACTTTTTCCTCACATGCCGTCACTACAACTGTTTCTTCT
TCATCTCAGCACCACTATGATTCCCATGCCACATCATCGCACAACCCCCA
AACTCCCAAGCTACCCTCCTCCACAATTCGCGTCGCAAGTGCGCGTGCAA
TCAGCCCTATGCGACGTCCCGATGGAGATCGCTTCACTGAAATGCAACCG
CTTCCCTCTCAGCGACGTACTGATTTGATGGCACCAAAAACCGTCGGGTT
TTGGTCCATCATACCTTATATGGCTGCGTCCGCAGTAATGGTCGGTGCAG
CTTGGATCGCCAAGAAACGCTTTACTGCCCGACAAGCCGCTCTTGTTGAT
GAGTTCGGGCAGGTTATAGTGTTGTACGGCACCACCCCGGAGGCTAAGCG
CGAGATTGCCTCTGAATACAAGCGCAAGCTTGGTCCAGGCATCCTACGAG
GCGCAATGTTTTCCTCTTATCTTGCCACCCTTGTTGCTGAAAAGGCCATT
ATTCCATCTACTATTCAAGAAGTCTCAATGGTTAAGAAGCTCCTACGTGT
TGGTGACGACAAGGCTATAAAAGCTGTAAACAATTTGGCTGCGACTATGA
GTGATTCACCGAGTTTGTTGGGCAAACTTCTTTTTATCACTGAAAGGATA
TTGAGTCCTGAAAAAACAGCTGCTTTGCAACTTGTTCCATTATTCCCATA
TAGCGCATCCACCGTTGCCGATCTGCAAAAAAATATGCTCGAGAGATGCT
ATCGCGACTTCGTCACTAATGAAATTGAAAATAATCAAGTAGAAGAAGTA
CCATTGGCTGCCGCTGCTGCGTTGCGATTAGATGAAGCGCATGCGAAGCT
TCTTTTTGATGGCGTTGTGAAGGATAGGGTCCGGCGGCTTAAGGAAGAAG
CAGCAAAAGCGGAAGCTGCCGAGGCAGAGGAAGCTGCCAAACTTAGCGTT
GAAGATCTTGACTACCCCGCCAGATCAGGAGAACCTGCCAAGGCGACTGT
GCACGCGTACCAGTGTTCGGATTGCGGATATACGCTTTTCCCTGCGGCGG
GTCGGGAGTTCAAGTTCTACGGCGACGACTTTGTATGCCCAGCATGTGGC
GCTCCCAAGGACAAATTTGTCGATGTAAATGCTGAAGAGTAG
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protein sequence of Gchil6818.t1

>Gchil6818.t1 ID=Gchil6818.t1|Name=Gchil6818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=414bp
MHRRGLPAAFSPALPVLLSRHNEPLPTLLSVRRRPTVTFSSHAVTTTVSS
SSQHHYDSHATSSHNPQTPKLPSSTIRVASARAISPMRRPDGDRFTEMQP
LPSQRRTDLMAPKTVGFWSIIPYMAASAVMVGAAWIAKKRFTARQAALVD
EFGQVIVLYGTTPEAKREIASEYKRKLGPGILRGAMFSSYLATLVAEKAI
IPSTIQEVSMVKKLLRVGDDKAIKAVNNLAATMSDSPSLLGKLLFITERI
LSPEKTAALQLVPLFPYSASTVADLQKNMLERCYRDFVTNEIENNQVEEV
PLAAAAALRLDEAHAKLLFDGVVKDRVRRLKEEAAKAEAAEAEEAAKLSV
EDLDYPARSGEPAKATVHAYQCSDCGYTLFPAAGREFKFYGDDFVCPACG
APKDKFVDVNAEE*
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mRNA from alignment at tig00004376_pilon:49081..50322-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6818.t1 ID=Gchil6818.t1|Name=Gchil6818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1242bp|location=Sequence derived from alignment at tig00004376_pilon:49081..50322- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGTCGCGGCCTACCTGCCGCCTTCTCGCCTGCGTTGCCGGTGCT
TTTGTCGCGACATAACGAGCCTCTCCCAACTCTTCTATCCGTGCGTCGCC
GTCCCACTGTCACTTTTTCCTCACATGCCGTCACTACAACTGTTTCTTCT
TCATCTCAGCACCACTATGATTCCCATGCCACATCATCGCACAACCCCCA
AACTCCCAAGCTACCCTCCTCCACAATTCGCGTCGCAAGTGCGCGTGCAA
TCAGCCCTATGCGACGTCCCGATGGAGATCGCTTCACTGAAATGCAACCG
CTTCCCTCTCAGCGACGTACTGATTTGATGGCACCAAAAACCGTCGGGTT
TTGGTCCATCATACCTTATATGGCTGCGTCCGCAGTAATGGTCGGTGCAG
CTTGGATCGCCAAGAAACGCTTTACTGCCCGACAAGCCGCTCTTGTTGAT
GAGTTCGGGCAGGTTATAGTGTTGTACGGCACCACCCCGGAGGCTAAGCG
CGAGATTGCCTCTGAATACAAGCGCAAGCTTGGTCCAGGCATCCTACGAG
GCGCAATGTTTTCCTCTTATCTTGCCACCCTTGTTGCTGAAAAGGCCATT
ATTCCATCTACTATTCAAGAAGTCTCAATGGTTAAGAAGCTCCTACGTGT
TGGTGACGACAAGGCTATAAAAGCTGTAAACAATTTGGCTGCGACTATGA
GTGATTCACCGAGTTTGTTGGGCAAACTTCTTTTTATCACTGAAAGGATA
TTGAGTCCTGAAAAAACAGCTGCTTTGCAACTTGTTCCATTATTCCCATA
TAGCGCATCCACCGTTGCCGATCTGCAAAAAAATATGCTCGAGAGATGCT
ATCGCGACTTCGTCACTAATGAAATTGAAAATAATCAAGTAGAAGAAGTA
CCATTGGCTGCCGCTGCTGCGTTGCGATTAGATGAAGCGCATGCGAAGCT
TCTTTTTGATGGCGTTGTGAAGGATAGGGTCCGGCGGCTTAAGGAAGAAG
CAGCAAAAGCGGAAGCTGCCGAGGCAGAGGAAGCTGCCAAACTTAGCGTT
GAAGATCTTGACTACCCCGCCAGATCAGGAGAACCTGCCAAGGCGACTGT
GCACGCGTACCAGTGTTCGGATTGCGGATATACGCTTTTCCCTGCGGCGG
GTCGGGAGTTCAAGTTCTACGGCGACGACTTTGTATGCCCAGCATGTGGC
GCTCCCAAGGACAAATTTGTCGATGTAAATGCTGAAGAGTAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:49081..50322-

>Gchil6818.t1 ID=Gchil6818.t1|Name=Gchil6818.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1242bp|location=Sequence derived from alignment at tig00004376_pilon:49081..50322- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCGTCGCGGCCTACCTGCCGCCTTCTCGCCTGCGTTGCCGGTGCT
TTTGTCGCGACATAACGAGCCTCTCCCAACTCTTCTATCCGTGCGTCGCC
GTCCCACTGTCACTTTTTCCTCACATGCCGTCACTACAACTGTTTCTTCT
TCATCTCAGCACCACTATGATTCCCATGCCACATCATCGCACAACCCCCA
AACTCCCAAGCTACCCTCCTCCACAATTCGCGTCGCAAGTGCGCGTGCAA
TCAGCCCTATGCGACGTCCCGATGGAGATCGCTTCACTGAAATGCAACCG
CTTCCCTCTCAGCGACGTACTGATTTGATGGCACCAAAAACCGTCGGGTT
TTGGTCCATCATACCTTATATGGCTGCGTCCGCAGTAATGGTCGGTGCAG
CTTGGATCGCCAAGAAACGCTTTACTGCCCGACAAGCCGCTCTTGTTGAT
GAGTTCGGGCAGGTTATAGTGTTGTACGGCACCACCCCGGAGGCTAAGCG
CGAGATTGCCTCTGAATACAAGCGCAAGCTTGGTCCAGGCATCCTACGAG
GCGCAATGTTTTCCTCTTATCTTGCCACCCTTGTTGCTGAAAAGGCCATT
ATTCCATCTACTATTCAAGAAGTCTCAATGGTTAAGAAGCTCCTACGTGT
TGGTGACGACAAGGCTATAAAAGCTGTAAACAATTTGGCTGCGACTATGA
GTGATTCACCGAGTTTGTTGGGCAAACTTCTTTTTATCACTGAAAGGATA
TTGAGTCCTGAAAAAACAGCTGCTTTGCAACTTGTTCCATTATTCCCATA
TAGCGCATCCACCGTTGCCGATCTGCAAAAAAATATGCTCGAGAGATGCT
ATCGCGACTTCGTCACTAATGAAATTGAAAATAATCAAGTAGAAGAAGTA
CCATTGGCTGCCGCTGCTGCGTTGCGATTAGATGAAGCGCATGCGAAGCT
TCTTTTTGATGGCGTTGTGAAGGATAGGGTCCGGCGGCTTAAGGAAGAAG
CAGCAAAAGCGGAAGCTGCCGAGGCAGAGGAAGCTGCCAAACTTAGCGTT
GAAGATCTTGACTACCCCGCCAGATCAGGAGAACCTGCCAAGGCGACTGT
GCACGCGTACCAGTGTTCGGATTGCGGATATACGCTTTTCCCTGCGGCGG
GTCGGGAGTTCAAGTTCTACGGCGACGACTTTGTATGCCCAGCATGTGGC
GCTCCCAAGGACAAATTTGTCGATGTAAATGCTGAAGAGTAG
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