Gchil6816.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6816.t1
Unique NameGchil6816.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length103
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1351225..1351619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6816Gchil6816Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1351225..1351619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6816.t1Gchil6816.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1351225..1351619 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6816.t1.stop1Gchil6816.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1351225..1351227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6816.t1.CDS1Gchil6816.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1351225..1351505 -
Gchil6816.t1.CDS2Gchil6816.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1351592..1351619 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6816.t1.exon1Gchil6816.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1351225..1351505 -
Gchil6816.t1.exon2Gchil6816.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1351592..1351619 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6816.t1.intron1Gchil6816.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1351506..1351591 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6816.t1.start1Gchil6816.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1351617..1351619 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6816.t1 ID=Gchil6816.t1|Name=Gchil6816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=103bp
MAVVLVYDRIRGVESVFLSTVIIGKCGKMLPVLLILKLWPGRQCTYEEVV
AVFGVFLDEYATRIKSGNACAKHLSSADTDIPFGIILMLFNWTYDTVASK
HH*
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spliced messenger RNA

>Gchil6816.t1 ID=Gchil6816.t1|Name=Gchil6816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp|location=Sequence derived from alignment at tig00004416_pilon:1351225..1351619- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTGGTTTTGGTGTATGATCGCATAAGAGGTGTTGAATCGGTGTT
CCTTTCGACCGTCATCATTGGAAAGTGTGGCAAGATGCTGCCGGTTTTGC
TCATTCTGAAGTTGTGGCCGGGCAGGCAATGCACTTATGAGGAGGTTGTT
GCTGTATTTGGCGTATTTTTGGACGAATATGCTACCAGGATCAAGTCGGG
AAATGCATGTGCAAAGCACTTGTCGTCGGCTGATACCGACATACCGTTCG
GAATCATACTCATGTTGTTCAATTGGACTTATGACACCGTGGCATCAAAG
CATCATTAG
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protein sequence of Gchil6816.t1

>Gchil6816.t1 ID=Gchil6816.t1|Name=Gchil6816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=103bp
MAVVLVYDRIRGVESVFLSTVIIGKCGKMLPVLLILKLWPGRQCTYEEVV
AVFGVFLDEYATRIKSGNACAKHLSSADTDIPFGIILMLFNWTYDTVASK
HH*
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mRNA from alignment at tig00004416_pilon:1351225..1351619-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6816.t1 ID=Gchil6816.t1|Name=Gchil6816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=395bp|location=Sequence derived from alignment at tig00004416_pilon:1351225..1351619- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGTGGTTTTGGTGTATGATCGCAGTGAGTCGTCACATCTGAAAGC
GGCGGCGCCGTTGACCAACTACGTATATGTGTCTGTGTCTAATACAATTA
CCATATCTTGCCAGTAAGAGGTGTTGAATCGGTGTTCCTTTCGACCGTCA
TCATTGGAAAGTGTGGCAAGATGCTGCCGGTTTTGCTCATTCTGAAGTTG
TGGCCGGGCAGGCAATGCACTTATGAGGAGGTTGTTGCTGTATTTGGCGT
ATTTTTGGACGAATATGCTACCAGGATCAAGTCGGGAAATGCATGTGCAA
AGCACTTGTCGTCGGCTGATACCGACATACCGTTCGGAATCATACTCATG
TTGTTCAATTGGACTTATGACACCGTGGCATCAAAGCATCATTAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:1351225..1351619-

>Gchil6816.t1 ID=Gchil6816.t1|Name=Gchil6816.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=309bp|location=Sequence derived from alignment at tig00004416_pilon:1351225..1351619- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTGTGGTTTTGGTGTATGATCGCATAAGAGGTGTTGAATCGGTGTT
CCTTTCGACCGTCATCATTGGAAAGTGTGGCAAGATGCTGCCGGTTTTGC
TCATTCTGAAGTTGTGGCCGGGCAGGCAATGCACTTATGAGGAGGTTGTT
GCTGTATTTGGCGTATTTTTGGACGAATATGCTACCAGGATCAAGTCGGG
AAATGCATGTGCAAAGCACTTGTCGTCGGCTGATACCGACATACCGTTCG
GAATCATACTCATGTTGTTCAATTGGACTTATGACACCGTGGCATCAAAG
CATCATTAG
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