Gchil6808.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6808.t1
Unique NameGchil6808.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1280113..1280472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog866546.EPY50967
Preferred namebrr2
PFAMsDEAD,Helicase_C,Sec63
Max annot lvl4751|Fungi
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
Evalue2.35e-07
EggNOG OGsCOG1204@1|root,KOG0951@2759|Eukaryota,3ARV9@33154|Opisthokonta,3NVEF@4751|Fungi,3QJD0@4890|Ascomycota,3MCAZ@451866|Taphrinomycotina
EC3.6.4.13
DescriptionU5 snRNP complex subunit Brr2
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6808Gchil6808Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1280113..1280472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6808.t1.stop1Gchil6808.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1280113..1280115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6808.t1.CDS1Gchil6808.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1280113..1280472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6808.t1.exon1Gchil6808.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1280113..1280472 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6808.t1.start1Gchil6808.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1280470..1280472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6808.t1Gchil6808.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1280113..1280472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6808.t1 ID=Gchil6808.t1|Name=Gchil6808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=120bp
MGDKVTTSRRTQAVVHRIEKRKEQVSQAAQPEFMDPSVLDVAKELDLGGN
EYTSTLTTRISQRAFEALLAFVMSKLGDQPCELLRSATDQVLVTVKDEIL
QDNETKMLVEELFGVAMYR*
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spliced messenger RNA

>Gchil6808.t1 ID=Gchil6808.t1|Name=Gchil6808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00004416_pilon:1280113..1280472- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGATAAGGTCACAACTTCCCGCAGAACGCAAGCAGTCGTCCACAG
AATTGAAAAGAGAAAAGAACAAGTGAGTCAAGCTGCACAACCTGAATTCA
TGGATCCATCGGTTCTGGACGTCGCAAAGGAGTTGGATCTCGGTGGAAAT
GAGTATACTTCTACTCTAACCACTCGCATTTCACAAAGGGCATTCGAGGC
GTTGTTGGCATTTGTTATGTCCAAGCTTGGCGACCAGCCCTGTGAACTGC
TTCGTAGCGCTACGGACCAGGTCTTAGTTACCGTGAAAGACGAAATTCTG
CAAGACAATGAAACGAAGATGTTGGTCGAAGAATTATTCGGCGTGGCCAT
GTACCGATGA
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protein sequence of Gchil6808.t1

>Gchil6808.t1 ID=Gchil6808.t1|Name=Gchil6808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=120bp
MGDKVTTSRRTQAVVHRIEKRKEQVSQAAQPEFMDPSVLDVAKELDLGGN
EYTSTLTTRISQRAFEALLAFVMSKLGDQPCELLRSATDQVLVTVKDEIL
QDNETKMLVEELFGVAMYR*
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mRNA from alignment at tig00004416_pilon:1280113..1280472-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6808.t1 ID=Gchil6808.t1|Name=Gchil6808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00004416_pilon:1280113..1280472- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGATAAGGTCACAACTTCCCGCAGAACGCAAGCAGTCGTCCACAG
AATTGAAAAGAGAAAAGAACAAGTGAGTCAAGCTGCACAACCTGAATTCA
TGGATCCATCGGTTCTGGACGTCGCAAAGGAGTTGGATCTCGGTGGAAAT
GAGTATACTTCTACTCTAACCACTCGCATTTCACAAAGGGCATTCGAGGC
GTTGTTGGCATTTGTTATGTCCAAGCTTGGCGACCAGCCCTGTGAACTGC
TTCGTAGCGCTACGGACCAGGTCTTAGTTACCGTGAAAGACGAAATTCTG
CAAGACAATGAAACGAAGATGTTGGTCGAAGAATTATTCGGCGTGGCCAT
GTACCGATGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1280113..1280472-

>Gchil6808.t1 ID=Gchil6808.t1|Name=Gchil6808.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=360bp|location=Sequence derived from alignment at tig00004416_pilon:1280113..1280472- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGATAAGGTCACAACTTCCCGCAGAACGCAAGCAGTCGTCCACAG
AATTGAAAAGAGAAAAGAACAAGTGAGTCAAGCTGCACAACCTGAATTCA
TGGATCCATCGGTTCTGGACGTCGCAAAGGAGTTGGATCTCGGTGGAAAT
GAGTATACTTCTACTCTAACCACTCGCATTTCACAAAGGGCATTCGAGGC
GTTGTTGGCATTTGTTATGTCCAAGCTTGGCGACCAGCCCTGTGAACTGC
TTCGTAGCGCTACGGACCAGGTCTTAGTTACCGTGAAAGACGAAATTCTG
CAAGACAATGAAACGAAGATGTTGGTCGAAGAATTATTCGGCGTGGCCAT
GTACCGATGA
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