Gchil6802.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6802.t1
Unique NameGchil6802.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1234203..1234694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6802Gchil6802Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1234203..1234694 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6802.t1.stop1Gchil6802.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1234203..1234205 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6802.t1.CDS1Gchil6802.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1234203..1234694 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6802.t1.exon1Gchil6802.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1234203..1234694 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6802.t1.start1Gchil6802.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1234692..1234694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6802.t1Gchil6802.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1234203..1234694 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6802.t1 ID=Gchil6802.t1|Name=Gchil6802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=164bp
MSPQIVSKCNSSFIDIDCITHGNRRQSDKDKEQTSDFRQEFGDMIVTGNR
ITEVEEVGDTVTEEIDVGGVNGDVAAILEHEYVSNSCANMETVDSSKACA
SSSQLSPESSTPLKRPNTRKIQQNIRLKASETEGGVKEEEGNEDIGRNDT
PIKLIDCFMFFDD*
back to top

spliced messenger RNA

>Gchil6802.t1 ID=Gchil6802.t1|Name=Gchil6802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00004416_pilon:1234203..1234694- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCTCAAATTGTATCAAAGTGCAATAGTTCTTTTATAGACATTGA
TTGTATCACGCATGGCAATAGACGCCAATCAGACAAGGACAAAGAACAGA
CCTCTGACTTCCGTCAAGAATTTGGAGACATGATTGTGACAGGGAACAGG
ATAACAGAAGTGGAAGAAGTGGGTGACACTGTAACTGAAGAGATTGACGT
AGGAGGCGTCAACGGAGACGTGGCTGCAATATTGGAACATGAATATGTTT
CTAATTCCTGCGCGAATATGGAAACGGTAGACTCCTCTAAAGCATGCGCA
AGTAGTTCACAACTTTCTCCAGAGTCTTCTACACCTTTGAAGAGGCCTAA
CACGCGCAAAATACAACAGAATATCCGATTGAAGGCCTCAGAGACGGAAG
GGGGTGTCAAGGAGGAGGAGGGAAATGAAGACATTGGGAGGAATGACACA
CCTATTAAGCTCATCGACTGCTTCATGTTTTTCGACGATTAG
back to top

protein sequence of Gchil6802.t1

>Gchil6802.t1 ID=Gchil6802.t1|Name=Gchil6802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=164bp
MSPQIVSKCNSSFIDIDCITHGNRRQSDKDKEQTSDFRQEFGDMIVTGNR
ITEVEEVGDTVTEEIDVGGVNGDVAAILEHEYVSNSCANMETVDSSKACA
SSSQLSPESSTPLKRPNTRKIQQNIRLKASETEGGVKEEEGNEDIGRNDT
PIKLIDCFMFFDD*
back to top

mRNA from alignment at tig00004416_pilon:1234203..1234694-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6802.t1 ID=Gchil6802.t1|Name=Gchil6802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=492bp|location=Sequence derived from alignment at tig00004416_pilon:1234203..1234694- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCCTCAAATTGTATCAAAGTGCAATAGTTCTTTTATAGACATTGA
TTGTATCACGCATGGCAATAGACGCCAATCAGACAAGGACAAAGAACAGA
CCTCTGACTTCCGTCAAGAATTTGGAGACATGATTGTGACAGGGAACAGG
ATAACAGAAGTGGAAGAAGTGGGTGACACTGTAACTGAAGAGATTGACGT
AGGAGGCGTCAACGGAGACGTGGCTGCAATATTGGAACATGAATATGTTT
CTAATTCCTGCGCGAATATGGAAACGGTAGACTCCTCTAAAGCATGCGCA
AGTAGTTCACAACTTTCTCCAGAGTCTTCTACACCTTTGAAGAGGCCTAA
CACGCGCAAAATACAACAGAATATCCGATTGAAGGCCTCAGAGACGGAAG
GGGGTGTCAAGGAGGAGGAGGGAAATGAAGACATTGGGAGGAATGACACA
CCTATTAAGCTCATCGACTGCTTCATGTTTTTCGACGATTAG
back to top

Coding sequence (CDS) from alignment at tig00004416_pilon:1234203..1234694-

>Gchil6802.t1 ID=Gchil6802.t1|Name=Gchil6802.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=492bp|location=Sequence derived from alignment at tig00004416_pilon:1234203..1234694- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCCTCAAATTGTATCAAAGTGCAATAGTTCTTTTATAGACATTGA
TTGTATCACGCATGGCAATAGACGCCAATCAGACAAGGACAAAGAACAGA
CCTCTGACTTCCGTCAAGAATTTGGAGACATGATTGTGACAGGGAACAGG
ATAACAGAAGTGGAAGAAGTGGGTGACACTGTAACTGAAGAGATTGACGT
AGGAGGCGTCAACGGAGACGTGGCTGCAATATTGGAACATGAATATGTTT
CTAATTCCTGCGCGAATATGGAAACGGTAGACTCCTCTAAAGCATGCGCA
AGTAGTTCACAACTTTCTCCAGAGTCTTCTACACCTTTGAAGAGGCCTAA
CACGCGCAAAATACAACAGAATATCCGATTGAAGGCCTCAGAGACGGAAG
GGGGTGTCAAGGAGGAGGAGGGAAATGAAGACATTGGGAGGAATGACACA
CCTATTAAGCTCATCGACTGCTTCATGTTTTTCGACGATTAG
back to top