Gchil6800.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6800.t1
Unique NameGchil6800.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1210122..1211279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_00775T0
Preferred nameDYS1
PFAMsDS
Max annot lvl4751|Fungi
KEGG koko:K00809
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008612,GO:0009058,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016740,GO:0016765,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034038,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:2000112,GO:2000765
Evalue1.5e-157
EggNOG OGsCOG1899@1|root,KOG2924@2759|Eukaryota,38CMK@33154|Opisthokonta,3NTXI@4751|Fungi
EC2.5.1.46
DescriptionDeoxyhypusine synthase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6800Gchil6800Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1210122..1211279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6800.t1Gchil6800.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1210122..1211279 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6800.t1.stop1Gchil6800.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1210122..1210124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6800.t1.CDS1Gchil6800.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1210122..1210976 -
Gchil6800.t1.CDS2Gchil6800.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1211052..1211279 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6800.t1.exon1Gchil6800.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1210122..1210976 -
Gchil6800.t1.exon2Gchil6800.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1211052..1211279 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6800.t1.intron1Gchil6800.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1210977..1211051 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6800.t1.start1Gchil6800.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1211277..1211279 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6800.t1 ID=Gchil6800.t1|Name=Gchil6800.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=361bp
MMSPAKPGSLLAPVLPTVAAEAVLQQSEQLPHNTPLVRGYDFSEDTVDYD
ALLESYKQSGFQATNFGIAVDIINDMIAWEPSKSQVQAGVSPDGRCNIFL
GYTSNMISSGVRETIKYLVKNRHVHTIVTSAGGVEEDLIKCLGPTGIGSF
RVNDADLRKRGINRIGNLMVPNDNYCKFEDWIIPLLDEALVKQKEKGHIW
SPSTLIRFLGERIDNEDSVLYWAAKNNIPVFCPALTDGSIGDMLFFHSYK
NPGLIVDLVQDIRRINRIAINAPATGMIIVGGGIVKHHIANANLMRNGAD
FSVYLNTGQEFDGSDAGASPNEAVSWGKIKITGKKVKIHAEASLILPLLV
AQTFARSKHR*
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spliced messenger RNA

>Gchil6800.t1 ID=Gchil6800.t1|Name=Gchil6800.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00004416_pilon:1210122..1211279- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCGCCCGCAAAACCTGGAAGCCTTTTGGCTCCTGTTCTACCTAC
GGTTGCTGCTGAAGCCGTGCTGCAGCAATCAGAGCAGCTTCCACACAACA
CGCCTCTTGTACGCGGTTACGATTTCTCGGAGGATACTGTCGACTACGAT
GCGTTACTTGAGTCCTACAAACAAAGCGGATTTCAAGCTACAAACTTTGG
AATTGCCGTTGACATAATCAACGACATGATTGCATGGGAACCTTCTAAAT
CTCAAGTGCAAGCAGGAGTTTCGCCAGATGGTCGTTGTAACATCTTCCTG
GGCTATACATCCAATATGATATCCTCCGGTGTGCGAGAAACCATCAAATA
TTTAGTCAAGAATCGCCATGTGCATACCATCGTCACGTCAGCAGGAGGTG
TTGAGGAGGATCTCATCAAGTGCCTTGGTCCCACAGGTATTGGTTCCTTT
CGTGTAAATGACGCGGATCTGCGAAAGCGCGGTATAAATCGCATTGGAAA
TCTTATGGTTCCGAATGATAACTACTGCAAGTTTGAAGATTGGATCATTC
CACTTCTTGACGAAGCACTTGTCAAGCAAAAGGAAAAAGGTCACATTTGG
TCTCCCAGCACGTTAATCAGATTTTTGGGAGAACGTATCGATAACGAAGA
CTCCGTTCTATATTGGGCCGCCAAGAACAACATTCCAGTTTTCTGTCCCG
CTCTGACAGATGGATCGATTGGTGATATGCTCTTTTTTCATTCATACAAG
AATCCTGGCCTCATTGTTGACTTGGTACAAGATATTCGGCGAATTAATCG
GATCGCAATAAATGCACCTGCCACTGGAATGATCATCGTTGGCGGTGGTA
TTGTGAAGCACCATATTGCAAATGCTAACCTCATGAGGAACGGAGCTGAT
TTCTCAGTTTATCTCAATACGGGCCAAGAGTTTGATGGATCTGATGCGGG
TGCCTCACCAAACGAGGCTGTTTCATGGGGAAAGATCAAGATCACCGGCA
AGAAAGTCAAAATCCATGCTGAAGCATCATTGATTCTTCCGCTATTGGTC
GCCCAAACATTTGCTAGATCAAAGCATCGATAG
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protein sequence of Gchil6800.t1

>Gchil6800.t1 ID=Gchil6800.t1|Name=Gchil6800.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=361bp
MMSPAKPGSLLAPVLPTVAAEAVLQQSEQLPHNTPLVRGYDFSEDTVDYD
ALLESYKQSGFQATNFGIAVDIINDMIAWEPSKSQVQAGVSPDGRCNIFL
GYTSNMISSGVRETIKYLVKNRHVHTIVTSAGGVEEDLIKCLGPTGIGSF
RVNDADLRKRGINRIGNLMVPNDNYCKFEDWIIPLLDEALVKQKEKGHIW
SPSTLIRFLGERIDNEDSVLYWAAKNNIPVFCPALTDGSIGDMLFFHSYK
NPGLIVDLVQDIRRINRIAINAPATGMIIVGGGIVKHHIANANLMRNGAD
FSVYLNTGQEFDGSDAGASPNEAVSWGKIKITGKKVKIHAEASLILPLLV
AQTFARSKHR*
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mRNA from alignment at tig00004416_pilon:1210122..1211279-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6800.t1 ID=Gchil6800.t1|Name=Gchil6800.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1158bp|location=Sequence derived from alignment at tig00004416_pilon:1210122..1211279- (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCGCCCGCAAAACCTGGAAGCCTTTTGGCTCCTGTTCTACCTAC
GGTTGCTGCTGAAGCCGTGCTGCAGCAATCAGAGCAGCTTCCACACAACA
CGCCTCTTGTACGCGGTTACGATTTCTCGGAGGATACTGTCGACTACGAT
GCGTTACTTGAGTCCTACAAACAAAGCGGATTTCAAGCTACAAACTTTGG
AATTGCCGTTGACATAATCAACGACATGGTGCGTTCACTTTTTCCTCGTT
CTCGATAGCAATCCCTGTGGTGATAATTTCGTACTGATTATTTTTTATTG
AAGATTGCATGGGAACCTTCTAAATCTCAAGTGCAAGCAGGAGTTTCGCC
AGATGGTCGTTGTAACATCTTCCTGGGCTATACATCCAATATGATATCCT
CCGGTGTGCGAGAAACCATCAAATATTTAGTCAAGAATCGCCATGTGCAT
ACCATCGTCACGTCAGCAGGAGGTGTTGAGGAGGATCTCATCAAGTGCCT
TGGTCCCACAGGTATTGGTTCCTTTCGTGTAAATGACGCGGATCTGCGAA
AGCGCGGTATAAATCGCATTGGAAATCTTATGGTTCCGAATGATAACTAC
TGCAAGTTTGAAGATTGGATCATTCCACTTCTTGACGAAGCACTTGTCAA
GCAAAAGGAAAAAGGTCACATTTGGTCTCCCAGCACGTTAATCAGATTTT
TGGGAGAACGTATCGATAACGAAGACTCCGTTCTATATTGGGCCGCCAAG
AACAACATTCCAGTTTTCTGTCCCGCTCTGACAGATGGATCGATTGGTGA
TATGCTCTTTTTTCATTCATACAAGAATCCTGGCCTCATTGTTGACTTGG
TACAAGATATTCGGCGAATTAATCGGATCGCAATAAATGCACCTGCCACT
GGAATGATCATCGTTGGCGGTGGTATTGTGAAGCACCATATTGCAAATGC
TAACCTCATGAGGAACGGAGCTGATTTCTCAGTTTATCTCAATACGGGCC
AAGAGTTTGATGGATCTGATGCGGGTGCCTCACCAAACGAGGCTGTTTCA
TGGGGAAAGATCAAGATCACCGGCAAGAAAGTCAAAATCCATGCTGAAGC
ATCATTGATTCTTCCGCTATTGGTCGCCCAAACATTTGCTAGATCAAAGC
ATCGATAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:1210122..1211279-

>Gchil6800.t1 ID=Gchil6800.t1|Name=Gchil6800.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00004416_pilon:1210122..1211279- (Gracilaria chilensis NLEC103_M9 male)
ATGATGTCGCCCGCAAAACCTGGAAGCCTTTTGGCTCCTGTTCTACCTAC
GGTTGCTGCTGAAGCCGTGCTGCAGCAATCAGAGCAGCTTCCACACAACA
CGCCTCTTGTACGCGGTTACGATTTCTCGGAGGATACTGTCGACTACGAT
GCGTTACTTGAGTCCTACAAACAAAGCGGATTTCAAGCTACAAACTTTGG
AATTGCCGTTGACATAATCAACGACATGATTGCATGGGAACCTTCTAAAT
CTCAAGTGCAAGCAGGAGTTTCGCCAGATGGTCGTTGTAACATCTTCCTG
GGCTATACATCCAATATGATATCCTCCGGTGTGCGAGAAACCATCAAATA
TTTAGTCAAGAATCGCCATGTGCATACCATCGTCACGTCAGCAGGAGGTG
TTGAGGAGGATCTCATCAAGTGCCTTGGTCCCACAGGTATTGGTTCCTTT
CGTGTAAATGACGCGGATCTGCGAAAGCGCGGTATAAATCGCATTGGAAA
TCTTATGGTTCCGAATGATAACTACTGCAAGTTTGAAGATTGGATCATTC
CACTTCTTGACGAAGCACTTGTCAAGCAAAAGGAAAAAGGTCACATTTGG
TCTCCCAGCACGTTAATCAGATTTTTGGGAGAACGTATCGATAACGAAGA
CTCCGTTCTATATTGGGCCGCCAAGAACAACATTCCAGTTTTCTGTCCCG
CTCTGACAGATGGATCGATTGGTGATATGCTCTTTTTTCATTCATACAAG
AATCCTGGCCTCATTGTTGACTTGGTACAAGATATTCGGCGAATTAATCG
GATCGCAATAAATGCACCTGCCACTGGAATGATCATCGTTGGCGGTGGTA
TTGTGAAGCACCATATTGCAAATGCTAACCTCATGAGGAACGGAGCTGAT
TTCTCAGTTTATCTCAATACGGGCCAAGAGTTTGATGGATCTGATGCGGG
TGCCTCACCAAACGAGGCTGTTTCATGGGGAAAGATCAAGATCACCGGCA
AGAAAGTCAAAATCCATGCTGAAGCATCATTGATTCTTCCGCTATTGGTC
GCCCAAACATTTGCTAGATCAAAGCATCGATAG
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