Gchil6799.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6799.t1
Unique NameGchil6799.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1209126..1209533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708413.1
PFAMsImg2
Max annot lvl2759|Eukaryota
KEGG koko:K17430
Evalue1.29e-29
EggNOG OGs2CXPQ@1|root,2RYXJ@2759|Eukaryota
DescriptionMitochondrial large subunit ribosomal protein (Img2)
COG categoryS
BRITEbr01610,ko00000,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6799Gchil6799Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1209126..1209533 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6799.t1.start1Gchil6799.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1209126..1209128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6799.t1.CDS1Gchil6799.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1209126..1209533 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6799.t1.exon1Gchil6799.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1209126..1209533 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6799.t1.stop1Gchil6799.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1209531..1209533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6799.t1Gchil6799.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1209126..1209533 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6799.t1 ID=Gchil6799.t1|Name=Gchil6799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=136bp
MFSPRVSTRLFSTAAHLHPRPPWTPPSTLKYPLREISREVIKPSGWSPPM
GGVERLPFRVFRTPKAKQIPVYTDYKNGRTRCLTVLRRFRGDASELAEEM
SRVCDDRPVAVHPGSVQVVGNYRARVEEWLLRLGF*
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spliced messenger RNA

>Gchil6799.t1 ID=Gchil6799.t1|Name=Gchil6799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00004416_pilon:1209126..1209533+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCACCGCGAGTTTCCACCCGCCTTTTCAGCACCGCTGCTCACCT
ACACCCCCGTCCACCATGGACTCCGCCATCAACTCTGAAATACCCCCTAC
GTGAAATATCTAGAGAAGTTATCAAGCCGTCCGGTTGGTCGCCTCCAATG
GGTGGTGTCGAGCGTCTGCCTTTCCGAGTCTTTCGTACTCCAAAAGCCAA
GCAAATCCCTGTCTACACTGACTATAAGAACGGCCGAACTCGGTGTTTGA
CAGTCCTACGGCGATTTCGAGGAGACGCTAGTGAACTTGCCGAGGAAATG
TCTCGTGTTTGTGATGATCGTCCGGTTGCCGTTCACCCAGGCAGTGTTCA
GGTTGTTGGTAACTATCGAGCGAGGGTTGAGGAATGGCTTTTGCGCCTAG
GTTTCTAG
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protein sequence of Gchil6799.t1

>Gchil6799.t1 ID=Gchil6799.t1|Name=Gchil6799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=136bp
MFSPRVSTRLFSTAAHLHPRPPWTPPSTLKYPLREISREVIKPSGWSPPM
GGVERLPFRVFRTPKAKQIPVYTDYKNGRTRCLTVLRRFRGDASELAEEM
SRVCDDRPVAVHPGSVQVVGNYRARVEEWLLRLGF*
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mRNA from alignment at tig00004416_pilon:1209126..1209533+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6799.t1 ID=Gchil6799.t1|Name=Gchil6799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00004416_pilon:1209126..1209533+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTCACCGCGAGTTTCCACCCGCCTTTTCAGCACCGCTGCTCACCT
ACACCCCCGTCCACCATGGACTCCGCCATCAACTCTGAAATACCCCCTAC
GTGAAATATCTAGAGAAGTTATCAAGCCGTCCGGTTGGTCGCCTCCAATG
GGTGGTGTCGAGCGTCTGCCTTTCCGAGTCTTTCGTACTCCAAAAGCCAA
GCAAATCCCTGTCTACACTGACTATAAGAACGGCCGAACTCGGTGTTTGA
CAGTCCTACGGCGATTTCGAGGAGACGCTAGTGAACTTGCCGAGGAAATG
TCTCGTGTTTGTGATGATCGTCCGGTTGCCGTTCACCCAGGCAGTGTTCA
GGTTGTTGGTAACTATCGAGCGAGGGTTGAGGAATGGCTTTTGCGCCTAG
GTTTCTAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:1209126..1209533+

>Gchil6799.t1 ID=Gchil6799.t1|Name=Gchil6799.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00004416_pilon:1209126..1209533+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTCACCGCGAGTTTCCACCCGCCTTTTCAGCACCGCTGCTCACCT
ACACCCCCGTCCACCATGGACTCCGCCATCAACTCTGAAATACCCCCTAC
GTGAAATATCTAGAGAAGTTATCAAGCCGTCCGGTTGGTCGCCTCCAATG
GGTGGTGTCGAGCGTCTGCCTTTCCGAGTCTTTCGTACTCCAAAAGCCAA
GCAAATCCCTGTCTACACTGACTATAAGAACGGCCGAACTCGGTGTTTGA
CAGTCCTACGGCGATTTCGAGGAGACGCTAGTGAACTTGCCGAGGAAATG
TCTCGTGTTTGTGATGATCGTCCGGTTGCCGTTCACCCAGGCAGTGTTCA
GGTTGTTGGTAACTATCGAGCGAGGGTTGAGGAATGGCTTTTGCGCCTAG
GTTTCTAG
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