Gchil6797.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6797.t1
Unique NameGchil6797.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length757
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1204674..1207100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog794903.OPIT5_14840
Max annot lvl414999|Opitutae
Evalue6.85e-49
EggNOG OGsCOG1636@1|root,COG1636@2|Bacteria,46YPJ@74201|Verrucomicrobia,3K9XZ@414999|Opitutae
DescriptionCatalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6797Gchil6797Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1204674..1207100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6797.t1Gchil6797.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1204674..1207100 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6797.t1.start1Gchil6797.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1204674..1204676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6797.t1.CDS1Gchil6797.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1204674..1205631 +
Gchil6797.t1.CDS2Gchil6797.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1205706..1205799 +
Gchil6797.t1.CDS3Gchil6797.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1205882..1207100 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6797.t1.exon1Gchil6797.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1204674..1205631 +
Gchil6797.t1.exon2Gchil6797.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1205706..1205799 +
Gchil6797.t1.exon3Gchil6797.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1205882..1207100 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6797.t1.intron1Gchil6797.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1205632..1205705 +
Gchil6797.t1.intron2Gchil6797.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1205800..1205881 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6797.t1.stop1Gchil6797.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1207098..1207100 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6797.t1 ID=Gchil6797.t1|Name=Gchil6797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=757bp
MGGVLCKEELFSFQTHIEERKSRTLCRVPWHSEVEVDCNGCRKFRSLPPP
GQHPRLFFSAEDLPSILTRFTHTEIGDVLRTILHNVKTAFLNDFYAKFEE
LSTEEVEHPSKTTIEKFFTPDEIRNVGLLGTYVSGFLDDDEDLMSKAKRS
ALFYARVILESKNLADINRYENPFHVWKSNRWDLHIGWMFGGSSYALLYD
LMFNELNDSERQVMRRAITTAVKGRRSWGMGFPGRRIQSNWAGYHGDLLS
LCAVVEGEEGFDREVYNLFSELMVNFLSYAVYESGHTVEDFYTLNLGMRE
GSMSFLVMARRGHNVFNHPHYKKIWSNWMPFALEPHSSGKVYGGSSGNFY
DYPTSAIIAKYMFPKDPYVDYGYKHYMHLNGTHLGKLKKLQSRLVVLAFA
LPPLPLDSYGSDQRALTLPLDFVCRPRGKVVMRSDWTDKALWFTLDARPD
CFLIGHDVCSRGAFVLNADGRAWGFCPEWHKFRDSDDYSLPHIDGVGQKH
KAPFVKLLDFFSSGDKYSFASADLTYAYNWTWTTWASETADLTGRGFEHE
PNDPADFGFNLWWAPRKLYGEGNVGFQGLHQWRQRFATVEKVYRSALMIR
SSRPYIIIVDDVQKDGGEHAYSWAMTTPDDVHLLSFDGVQAILAETHSCL
RRRLLIRSLSDRIENLECSFREVPKLPESAPRDQKARQIVFKTTSRGTRF
IFLLCSMSTSDSAPLTTKWLDTESLLSVSDGESGEVQTIQFSTGSIGQTV
MKPVEG*
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spliced messenger RNA

>Gchil6797.t1 ID=Gchil6797.t1|Name=Gchil6797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2271bp|location=Sequence derived from alignment at tig00004416_pilon:1204674..1207100+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAGGTGTTTTGTGCAAAGAGGAACTGTTTTCTTTTCAAACACACAT
TGAGGAACGGAAGAGCCGAACCCTCTGCCGTGTGCCTTGGCACTCCGAAG
TTGAGGTAGACTGCAACGGATGTCGCAAGTTTCGTTCTCTTCCGCCACCT
GGACAACATCCTCGTCTTTTCTTCTCTGCAGAAGATTTGCCTAGCATCCT
GACCCGTTTCACGCATACGGAAATCGGAGATGTGCTCAGAACCATATTGC
ATAATGTTAAGACGGCCTTTCTTAACGACTTTTATGCGAAGTTTGAAGAA
TTATCTACGGAAGAGGTAGAGCATCCATCCAAGACAACAATTGAAAAGTT
CTTCACCCCAGACGAGATTAGGAATGTGGGCTTATTGGGGACGTATGTGT
CTGGGTTTTTGGACGATGACGAAGATTTGATGAGTAAGGCGAAGAGAAGT
GCTTTATTTTATGCTAGAGTCATCCTCGAATCCAAGAACCTCGCCGACAT
AAATAGGTATGAGAATCCGTTTCACGTCTGGAAGTCAAATCGATGGGATC
TTCACATTGGATGGATGTTCGGTGGTTCGAGCTATGCTCTACTTTATGAT
CTCATGTTTAATGAGCTGAACGATAGTGAAAGACAAGTCATGCGAAGAGC
CATAACAACCGCTGTCAAAGGGCGACGAAGTTGGGGGATGGGGTTTCCTG
GCAGAAGAATTCAGAGCAACTGGGCTGGGTACCACGGAGACTTACTTTCG
CTTTGTGCAGTGGTTGAGGGAGAAGAAGGTTTTGACCGAGAGGTATACAA
CTTATTTTCAGAGTTGATGGTGAACTTCTTGAGTTACGCTGTTTATGAAA
GTGGTCATACAGTGGAGGATTTTTACACCCTGAACCTAGGTATGAGAGAA
GGTTCAATGAGTTTCTTAGTAATGGCTCGTAGGGGACACAACGTATTCAA
CCATCCACACTACAAGAAAATATGGTCTAACTGGATGCCGTTCGCATTGG
AGCCGCATAGCAGTGGAAAGGTATACGGTGGTTCATCTGGAAATTTCTAC
GACTATCCCACTTCCGCCATTATTGCAAAATATATGTTTCCGAAAGACCC
CTATGTCGATTATGGTTACAAGCATTACATGCATCTTAACGGTACTCACC
TCGGAAAACTGAAAAAACTACAGTCCAGACTAGTGGTCCTTGCTTTTGCT
CTACCTCCACTGCCATTAGATTCGTACGGATCCGATCAACGTGCTTTAAC
CCTTCCATTAGACTTCGTATGTCGCCCGCGAGGAAAAGTCGTAATGAGGT
CTGACTGGACAGATAAGGCTTTGTGGTTTACTCTTGATGCCCGTCCGGAT
TGTTTTCTAATTGGTCATGATGTATGTTCTAGAGGAGCCTTTGTTCTGAA
CGCTGATGGACGAGCATGGGGTTTTTGTCCTGAGTGGCACAAGTTTAGGG
ATTCTGACGACTATTCCTTACCGCATATTGATGGAGTTGGACAGAAGCAT
AAAGCTCCTTTCGTTAAGCTCCTTGATTTCTTCAGCAGCGGAGACAAATA
TTCGTTCGCATCTGCAGATTTGACTTATGCTTACAATTGGACATGGACAA
CATGGGCAAGCGAAACGGCAGATTTAACAGGCAGAGGTTTTGAGCATGAA
CCCAACGACCCAGCCGATTTTGGGTTTAATCTTTGGTGGGCACCACGTAA
GTTGTATGGGGAAGGCAACGTAGGTTTTCAAGGCCTCCATCAGTGGCGCC
AAAGATTCGCAACTGTAGAAAAAGTGTATCGCAGTGCTCTAATGATCCGT
AGTTCTCGCCCCTACATCATCATTGTGGATGATGTCCAGAAAGACGGAGG
TGAGCATGCTTACTCGTGGGCCATGACAACTCCCGATGATGTTCACCTAC
TCTCCTTTGACGGTGTTCAGGCAATTCTGGCAGAGACGCATAGTTGTCTA
CGACGACGGTTGTTGATCAGGAGCCTTTCCGACCGAATTGAAAACCTGGA
ATGTTCATTTCGAGAGGTGCCTAAATTGCCCGAGTCCGCTCCACGTGATC
AGAAAGCAAGACAAATAGTCTTCAAGACTACATCACGAGGCACGCGATTC
ATATTTCTCTTGTGTAGCATGTCTACGTCGGATTCAGCGCCACTGACTAC
AAAATGGCTTGATACAGAATCACTTCTGAGTGTCTCAGATGGTGAAAGTG
GGGAAGTTCAGACTATACAATTTTCAACTGGTAGTATCGGGCAAACCGTC
ATGAAGCCCGTCGAGGGGTGA
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protein sequence of Gchil6797.t1

>Gchil6797.t1 ID=Gchil6797.t1|Name=Gchil6797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=757bp
MGGVLCKEELFSFQTHIEERKSRTLCRVPWHSEVEVDCNGCRKFRSLPPP
GQHPRLFFSAEDLPSILTRFTHTEIGDVLRTILHNVKTAFLNDFYAKFEE
LSTEEVEHPSKTTIEKFFTPDEIRNVGLLGTYVSGFLDDDEDLMSKAKRS
ALFYARVILESKNLADINRYENPFHVWKSNRWDLHIGWMFGGSSYALLYD
LMFNELNDSERQVMRRAITTAVKGRRSWGMGFPGRRIQSNWAGYHGDLLS
LCAVVEGEEGFDREVYNLFSELMVNFLSYAVYESGHTVEDFYTLNLGMRE
GSMSFLVMARRGHNVFNHPHYKKIWSNWMPFALEPHSSGKVYGGSSGNFY
DYPTSAIIAKYMFPKDPYVDYGYKHYMHLNGTHLGKLKKLQSRLVVLAFA
LPPLPLDSYGSDQRALTLPLDFVCRPRGKVVMRSDWTDKALWFTLDARPD
CFLIGHDVCSRGAFVLNADGRAWGFCPEWHKFRDSDDYSLPHIDGVGQKH
KAPFVKLLDFFSSGDKYSFASADLTYAYNWTWTTWASETADLTGRGFEHE
PNDPADFGFNLWWAPRKLYGEGNVGFQGLHQWRQRFATVEKVYRSALMIR
SSRPYIIIVDDVQKDGGEHAYSWAMTTPDDVHLLSFDGVQAILAETHSCL
RRRLLIRSLSDRIENLECSFREVPKLPESAPRDQKARQIVFKTTSRGTRF
IFLLCSMSTSDSAPLTTKWLDTESLLSVSDGESGEVQTIQFSTGSIGQTV
MKPVEG*
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mRNA from alignment at tig00004416_pilon:1204674..1207100+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6797.t1 ID=Gchil6797.t1|Name=Gchil6797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2427bp|location=Sequence derived from alignment at tig00004416_pilon:1204674..1207100+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGGTGTTTTGTGCAAAGAGGAACTGTTTTCTTTTCAAACACACAT
TGAGGAACGGAAGAGCCGAACCCTCTGCCGTGTGCCTTGGCACTCCGAAG
TTGAGGTAGACTGCAACGGATGTCGCAAGTTTCGTTCTCTTCCGCCACCT
GGACAACATCCTCGTCTTTTCTTCTCTGCAGAAGATTTGCCTAGCATCCT
GACCCGTTTCACGCATACGGAAATCGGAGATGTGCTCAGAACCATATTGC
ATAATGTTAAGACGGCCTTTCTTAACGACTTTTATGCGAAGTTTGAAGAA
TTATCTACGGAAGAGGTAGAGCATCCATCCAAGACAACAATTGAAAAGTT
CTTCACCCCAGACGAGATTAGGAATGTGGGCTTATTGGGGACGTATGTGT
CTGGGTTTTTGGACGATGACGAAGATTTGATGAGTAAGGCGAAGAGAAGT
GCTTTATTTTATGCTAGAGTCATCCTCGAATCCAAGAACCTCGCCGACAT
AAATAGGTATGAGAATCCGTTTCACGTCTGGAAGTCAAATCGATGGGATC
TTCACATTGGATGGATGTTCGGTGGTTCGAGCTATGCTCTACTTTATGAT
CTCATGTTTAATGAGCTGAACGATAGTGAAAGACAAGTCATGCGAAGAGC
CATAACAACCGCTGTCAAAGGGCGACGAAGTTGGGGGATGGGGTTTCCTG
GCAGAAGAATTCAGAGCAACTGGGCTGGGTACCACGGAGACTTACTTTCG
CTTTGTGCAGTGGTTGAGGGAGAAGAAGGTTTTGACCGAGAGGTATACAA
CTTATTTTCAGAGTTGATGGTGAACTTCTTGAGTTACGCTGTTTATGAAA
GTGGTCATACAGTGGAGGATTTTTACACCCTGAACCTAGGTATGAGAGAA
GGTTCAATGAGTTTCTTAGTAATGGCTCGTAGGGGACACAACGTATTCAA
CCATCCACGTAAGTTATTTGAAAGGCTGTTGTAGCCGCGGAGAGGATCCA
GACCAACTAACTTTGCATTATTCTCGTTATAGACTACAAGAAAATATGGT
CTAACTGGATGCCGTTCGCATTGGAGCCGCATAGCAGTGGAAAGGTATAC
GGTGGTTCATCTGGAAATTTCTACGAGTGCGTTCGCCACATTTTCCCAAA
TCAAACATAGAGAAACTGACATGTTTAACTCCATCCAAATCTACTCCCGA
TCATCAAGCTATCCCACTTCCGCCATTATTGCAAAATATATGTTTCCGAA
AGACCCCTATGTCGATTATGGTTACAAGCATTACATGCATCTTAACGGTA
CTCACCTCGGAAAACTGAAAAAACTACAGTCCAGACTAGTGGTCCTTGCT
TTTGCTCTACCTCCACTGCCATTAGATTCGTACGGATCCGATCAACGTGC
TTTAACCCTTCCATTAGACTTCGTATGTCGCCCGCGAGGAAAAGTCGTAA
TGAGGTCTGACTGGACAGATAAGGCTTTGTGGTTTACTCTTGATGCCCGT
CCGGATTGTTTTCTAATTGGTCATGATGTATGTTCTAGAGGAGCCTTTGT
TCTGAACGCTGATGGACGAGCATGGGGTTTTTGTCCTGAGTGGCACAAGT
TTAGGGATTCTGACGACTATTCCTTACCGCATATTGATGGAGTTGGACAG
AAGCATAAAGCTCCTTTCGTTAAGCTCCTTGATTTCTTCAGCAGCGGAGA
CAAATATTCGTTCGCATCTGCAGATTTGACTTATGCTTACAATTGGACAT
GGACAACATGGGCAAGCGAAACGGCAGATTTAACAGGCAGAGGTTTTGAG
CATGAACCCAACGACCCAGCCGATTTTGGGTTTAATCTTTGGTGGGCACC
ACGTAAGTTGTATGGGGAAGGCAACGTAGGTTTTCAAGGCCTCCATCAGT
GGCGCCAAAGATTCGCAACTGTAGAAAAAGTGTATCGCAGTGCTCTAATG
ATCCGTAGTTCTCGCCCCTACATCATCATTGTGGATGATGTCCAGAAAGA
CGGAGGTGAGCATGCTTACTCGTGGGCCATGACAACTCCCGATGATGTTC
ACCTACTCTCCTTTGACGGTGTTCAGGCAATTCTGGCAGAGACGCATAGT
TGTCTACGACGACGGTTGTTGATCAGGAGCCTTTCCGACCGAATTGAAAA
CCTGGAATGTTCATTTCGAGAGGTGCCTAAATTGCCCGAGTCCGCTCCAC
GTGATCAGAAAGCAAGACAAATAGTCTTCAAGACTACATCACGAGGCACG
CGATTCATATTTCTCTTGTGTAGCATGTCTACGTCGGATTCAGCGCCACT
GACTACAAAATGGCTTGATACAGAATCACTTCTGAGTGTCTCAGATGGTG
AAAGTGGGGAAGTTCAGACTATACAATTTTCAACTGGTAGTATCGGGCAA
ACCGTCATGAAGCCCGTCGAGGGGTGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1204674..1207100+

>Gchil6797.t1 ID=Gchil6797.t1|Name=Gchil6797.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2271bp|location=Sequence derived from alignment at tig00004416_pilon:1204674..1207100+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGAGGTGTTTTGTGCAAAGAGGAACTGTTTTCTTTTCAAACACACAT
TGAGGAACGGAAGAGCCGAACCCTCTGCCGTGTGCCTTGGCACTCCGAAG
TTGAGGTAGACTGCAACGGATGTCGCAAGTTTCGTTCTCTTCCGCCACCT
GGACAACATCCTCGTCTTTTCTTCTCTGCAGAAGATTTGCCTAGCATCCT
GACCCGTTTCACGCATACGGAAATCGGAGATGTGCTCAGAACCATATTGC
ATAATGTTAAGACGGCCTTTCTTAACGACTTTTATGCGAAGTTTGAAGAA
TTATCTACGGAAGAGGTAGAGCATCCATCCAAGACAACAATTGAAAAGTT
CTTCACCCCAGACGAGATTAGGAATGTGGGCTTATTGGGGACGTATGTGT
CTGGGTTTTTGGACGATGACGAAGATTTGATGAGTAAGGCGAAGAGAAGT
GCTTTATTTTATGCTAGAGTCATCCTCGAATCCAAGAACCTCGCCGACAT
AAATAGGTATGAGAATCCGTTTCACGTCTGGAAGTCAAATCGATGGGATC
TTCACATTGGATGGATGTTCGGTGGTTCGAGCTATGCTCTACTTTATGAT
CTCATGTTTAATGAGCTGAACGATAGTGAAAGACAAGTCATGCGAAGAGC
CATAACAACCGCTGTCAAAGGGCGACGAAGTTGGGGGATGGGGTTTCCTG
GCAGAAGAATTCAGAGCAACTGGGCTGGGTACCACGGAGACTTACTTTCG
CTTTGTGCAGTGGTTGAGGGAGAAGAAGGTTTTGACCGAGAGGTATACAA
CTTATTTTCAGAGTTGATGGTGAACTTCTTGAGTTACGCTGTTTATGAAA
GTGGTCATACAGTGGAGGATTTTTACACCCTGAACCTAGGTATGAGAGAA
GGTTCAATGAGTTTCTTAGTAATGGCTCGTAGGGGACACAACGTATTCAA
CCATCCACACTACAAGAAAATATGGTCTAACTGGATGCCGTTCGCATTGG
AGCCGCATAGCAGTGGAAAGGTATACGGTGGTTCATCTGGAAATTTCTAC
GACTATCCCACTTCCGCCATTATTGCAAAATATATGTTTCCGAAAGACCC
CTATGTCGATTATGGTTACAAGCATTACATGCATCTTAACGGTACTCACC
TCGGAAAACTGAAAAAACTACAGTCCAGACTAGTGGTCCTTGCTTTTGCT
CTACCTCCACTGCCATTAGATTCGTACGGATCCGATCAACGTGCTTTAAC
CCTTCCATTAGACTTCGTATGTCGCCCGCGAGGAAAAGTCGTAATGAGGT
CTGACTGGACAGATAAGGCTTTGTGGTTTACTCTTGATGCCCGTCCGGAT
TGTTTTCTAATTGGTCATGATGTATGTTCTAGAGGAGCCTTTGTTCTGAA
CGCTGATGGACGAGCATGGGGTTTTTGTCCTGAGTGGCACAAGTTTAGGG
ATTCTGACGACTATTCCTTACCGCATATTGATGGAGTTGGACAGAAGCAT
AAAGCTCCTTTCGTTAAGCTCCTTGATTTCTTCAGCAGCGGAGACAAATA
TTCGTTCGCATCTGCAGATTTGACTTATGCTTACAATTGGACATGGACAA
CATGGGCAAGCGAAACGGCAGATTTAACAGGCAGAGGTTTTGAGCATGAA
CCCAACGACCCAGCCGATTTTGGGTTTAATCTTTGGTGGGCACCACGTAA
GTTGTATGGGGAAGGCAACGTAGGTTTTCAAGGCCTCCATCAGTGGCGCC
AAAGATTCGCAACTGTAGAAAAAGTGTATCGCAGTGCTCTAATGATCCGT
AGTTCTCGCCCCTACATCATCATTGTGGATGATGTCCAGAAAGACGGAGG
TGAGCATGCTTACTCGTGGGCCATGACAACTCCCGATGATGTTCACCTAC
TCTCCTTTGACGGTGTTCAGGCAATTCTGGCAGAGACGCATAGTTGTCTA
CGACGACGGTTGTTGATCAGGAGCCTTTCCGACCGAATTGAAAACCTGGA
ATGTTCATTTCGAGAGGTGCCTAAATTGCCCGAGTCCGCTCCACGTGATC
AGAAAGCAAGACAAATAGTCTTCAAGACTACATCACGAGGCACGCGATTC
ATATTTCTCTTGTGTAGCATGTCTACGTCGGATTCAGCGCCACTGACTAC
AAAATGGCTTGATACAGAATCACTTCTGAGTGTCTCAGATGGTGAAAGTG
GGGAAGTTCAGACTATACAATTTTCAACTGGTAGTATCGGGCAAACCGTC
ATGAAGCCCGTCGAGGGGTGA
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