Gchil6793.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6793.t1
Unique NameGchil6793.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length540
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1197972..1199591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706222.1
PFAMsATP_bind_1,MMR_HSR1
Max annot lvl2759|Eukaryota
Evalue4.11e-118
EggNOG OGsCOG1161@1|root,KOG1249@2759|Eukaryota
DescriptionGTP binding
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6793Gchil6793Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1197972..1199591 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6793.t1.start1Gchil6793.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1197972..1197974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6793.t1.CDS1Gchil6793.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1197972..1199591 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6793.t1.exon1Gchil6793.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1197972..1199591 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6793.t1.stop1Gchil6793.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1199589..1199591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6793.t1Gchil6793.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1197972..1199591 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6793.t1 ID=Gchil6793.t1|Name=Gchil6793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp
MQSPNDSAFNTSAKRNDISETEAKDIIFAFDKALDRIEEGIDSNLVRSRT
KEQKSHEQHLHRLESLVSLPAELCVEAVKDTCSGCGTVLQSESPNIPGFL
PPEVLAKQRLQEGAPATKVVTTSEQEQALVEDKPKRVVCQRCYRLTHYGA
IEPNLRVPPSISEENRHVPTELSPEKFRRNLEALKKINSVIIYLVDIFDF
HGTFIPDLRDIVGARNPVLLAVNKVDLLPSDMKATRVETWIKQECAELGL
SDIARVHLISSTKGQNVRELLADAVRLAKKRRSDIYVIGAANVGKSTFIN
RLISLQNRKRSKPRGKNRGSVSSVTDALTTSVVPGTTLDVIKIPLGSSLS
LYDTPGLMMPHQLTNYLDSKDLRAVLPSKTIERVSFRLGEGKALYIGGMA
RIEVVSGRPFFFTSFFSPEVKVHPGKAEGAIEFTEKHVGEFLKPPSSLEA
YEDLGEWTTKSFTAKGEGWKRSCADIVLSGLGWVALTGAGDLNVRICVPR
GVGVFTRESLMPFETQKGVSSYTGATAVNRGQLRKKKSY*
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spliced messenger RNA

>Gchil6793.t1 ID=Gchil6793.t1|Name=Gchil6793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00004416_pilon:1197972..1199591+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGTCCGAATGACAGCGCGTTTAATACATCTGCAAAACGAAACGA
CATTTCCGAAACAGAAGCAAAAGACATAATTTTTGCCTTTGATAAAGCTT
TGGACCGTATTGAGGAAGGAATCGATTCTAATCTTGTGAGATCCAGAACA
AAAGAGCAAAAATCTCATGAACAACATCTTCATCGTCTCGAATCCTTAGT
TTCTCTACCAGCAGAGCTCTGCGTGGAAGCCGTCAAAGACACCTGTTCCG
GTTGTGGAACAGTTCTACAGTCTGAATCTCCAAATATTCCAGGGTTTTTG
CCACCGGAGGTTCTGGCCAAGCAGCGTCTGCAAGAGGGAGCCCCTGCCAC
AAAGGTTGTAACAACTTCTGAACAGGAACAGGCCTTGGTAGAAGACAAGC
CAAAAAGAGTGGTGTGTCAGAGATGTTATCGACTGACCCATTACGGCGCG
ATCGAGCCAAACTTACGAGTTCCGCCCTCCATTTCTGAGGAAAATCGACA
CGTTCCCACTGAGCTCTCGCCGGAAAAGTTTCGTCGCAATCTAGAAGCTT
TGAAAAAGATCAATTCAGTGATCATTTACCTCGTTGACATCTTTGACTTT
CATGGTACCTTCATTCCTGATCTCCGAGATATCGTCGGTGCGAGGAATCC
CGTATTGCTTGCCGTGAATAAGGTGGACTTACTTCCATCTGACATGAAAG
CAACTCGCGTTGAAACTTGGATTAAGCAGGAGTGCGCGGAATTAGGTTTA
TCTGATATCGCTCGCGTGCATCTCATCTCGTCTACAAAGGGCCAAAACGT
TAGAGAGTTGCTGGCCGATGCCGTCAGGCTTGCAAAGAAGCGCCGTTCTG
ACATTTACGTGATTGGGGCAGCGAACGTGGGAAAGTCGACATTTATCAAT
CGACTTATCAGTCTACAGAATCGCAAACGCTCTAAACCACGCGGAAAGAA
TCGCGGAAGCGTTTCGTCAGTCACGGACGCCCTCACCACAAGTGTGGTTC
CAGGGACGACGCTTGATGTAATCAAAATTCCGCTTGGGTCATCCCTAAGC
TTGTACGATACTCCAGGTCTGATGATGCCACATCAATTGACAAATTATTT
GGATTCTAAAGATCTTCGGGCAGTGCTTCCTTCCAAGACCATTGAACGCG
TTTCATTTCGTCTCGGCGAAGGCAAGGCGCTCTACATAGGGGGAATGGCA
CGAATTGAAGTAGTGTCTGGAAGGCCTTTCTTCTTCACCTCGTTTTTCTC
ACCAGAGGTAAAGGTACATCCAGGAAAGGCGGAGGGTGCGATAGAGTTCA
CTGAAAAACATGTCGGGGAATTTCTCAAACCACCATCCTCGTTGGAAGCG
TATGAAGATCTGGGCGAATGGACGACGAAGTCTTTCACAGCCAAGGGTGA
AGGATGGAAGAGATCGTGTGCGGACATTGTGCTTTCTGGGTTGGGTTGGG
TGGCCCTAACAGGTGCTGGGGATCTCAACGTTCGGATATGCGTTCCCCGA
GGAGTCGGAGTGTTTACAAGAGAATCTCTGATGCCTTTTGAAACGCAAAA
AGGTGTAAGCTCGTACACAGGGGCAACGGCTGTCAACAGGGGGCAGCTCC
GGAAAAAGAAAAGTTACTAA
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protein sequence of Gchil6793.t1

>Gchil6793.t1 ID=Gchil6793.t1|Name=Gchil6793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=540bp
MQSPNDSAFNTSAKRNDISETEAKDIIFAFDKALDRIEEGIDSNLVRSRT
KEQKSHEQHLHRLESLVSLPAELCVEAVKDTCSGCGTVLQSESPNIPGFL
PPEVLAKQRLQEGAPATKVVTTSEQEQALVEDKPKRVVCQRCYRLTHYGA
IEPNLRVPPSISEENRHVPTELSPEKFRRNLEALKKINSVIIYLVDIFDF
HGTFIPDLRDIVGARNPVLLAVNKVDLLPSDMKATRVETWIKQECAELGL
SDIARVHLISSTKGQNVRELLADAVRLAKKRRSDIYVIGAANVGKSTFIN
RLISLQNRKRSKPRGKNRGSVSSVTDALTTSVVPGTTLDVIKIPLGSSLS
LYDTPGLMMPHQLTNYLDSKDLRAVLPSKTIERVSFRLGEGKALYIGGMA
RIEVVSGRPFFFTSFFSPEVKVHPGKAEGAIEFTEKHVGEFLKPPSSLEA
YEDLGEWTTKSFTAKGEGWKRSCADIVLSGLGWVALTGAGDLNVRICVPR
GVGVFTRESLMPFETQKGVSSYTGATAVNRGQLRKKKSY*
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mRNA from alignment at tig00004416_pilon:1197972..1199591+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6793.t1 ID=Gchil6793.t1|Name=Gchil6793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00004416_pilon:1197972..1199591+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGTCCGAATGACAGCGCGTTTAATACATCTGCAAAACGAAACGA
CATTTCCGAAACAGAAGCAAAAGACATAATTTTTGCCTTTGATAAAGCTT
TGGACCGTATTGAGGAAGGAATCGATTCTAATCTTGTGAGATCCAGAACA
AAAGAGCAAAAATCTCATGAACAACATCTTCATCGTCTCGAATCCTTAGT
TTCTCTACCAGCAGAGCTCTGCGTGGAAGCCGTCAAAGACACCTGTTCCG
GTTGTGGAACAGTTCTACAGTCTGAATCTCCAAATATTCCAGGGTTTTTG
CCACCGGAGGTTCTGGCCAAGCAGCGTCTGCAAGAGGGAGCCCCTGCCAC
AAAGGTTGTAACAACTTCTGAACAGGAACAGGCCTTGGTAGAAGACAAGC
CAAAAAGAGTGGTGTGTCAGAGATGTTATCGACTGACCCATTACGGCGCG
ATCGAGCCAAACTTACGAGTTCCGCCCTCCATTTCTGAGGAAAATCGACA
CGTTCCCACTGAGCTCTCGCCGGAAAAGTTTCGTCGCAATCTAGAAGCTT
TGAAAAAGATCAATTCAGTGATCATTTACCTCGTTGACATCTTTGACTTT
CATGGTACCTTCATTCCTGATCTCCGAGATATCGTCGGTGCGAGGAATCC
CGTATTGCTTGCCGTGAATAAGGTGGACTTACTTCCATCTGACATGAAAG
CAACTCGCGTTGAAACTTGGATTAAGCAGGAGTGCGCGGAATTAGGTTTA
TCTGATATCGCTCGCGTGCATCTCATCTCGTCTACAAAGGGCCAAAACGT
TAGAGAGTTGCTGGCCGATGCCGTCAGGCTTGCAAAGAAGCGCCGTTCTG
ACATTTACGTGATTGGGGCAGCGAACGTGGGAAAGTCGACATTTATCAAT
CGACTTATCAGTCTACAGAATCGCAAACGCTCTAAACCACGCGGAAAGAA
TCGCGGAAGCGTTTCGTCAGTCACGGACGCCCTCACCACAAGTGTGGTTC
CAGGGACGACGCTTGATGTAATCAAAATTCCGCTTGGGTCATCCCTAAGC
TTGTACGATACTCCAGGTCTGATGATGCCACATCAATTGACAAATTATTT
GGATTCTAAAGATCTTCGGGCAGTGCTTCCTTCCAAGACCATTGAACGCG
TTTCATTTCGTCTCGGCGAAGGCAAGGCGCTCTACATAGGGGGAATGGCA
CGAATTGAAGTAGTGTCTGGAAGGCCTTTCTTCTTCACCTCGTTTTTCTC
ACCAGAGGTAAAGGTACATCCAGGAAAGGCGGAGGGTGCGATAGAGTTCA
CTGAAAAACATGTCGGGGAATTTCTCAAACCACCATCCTCGTTGGAAGCG
TATGAAGATCTGGGCGAATGGACGACGAAGTCTTTCACAGCCAAGGGTGA
AGGATGGAAGAGATCGTGTGCGGACATTGTGCTTTCTGGGTTGGGTTGGG
TGGCCCTAACAGGTGCTGGGGATCTCAACGTTCGGATATGCGTTCCCCGA
GGAGTCGGAGTGTTTACAAGAGAATCTCTGATGCCTTTTGAAACGCAAAA
AGGTGTAAGCTCGTACACAGGGGCAACGGCTGTCAACAGGGGGCAGCTCC
GGAAAAAGAAAAGTTACTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1197972..1199591+

>Gchil6793.t1 ID=Gchil6793.t1|Name=Gchil6793.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1620bp|location=Sequence derived from alignment at tig00004416_pilon:1197972..1199591+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGTCCGAATGACAGCGCGTTTAATACATCTGCAAAACGAAACGA
CATTTCCGAAACAGAAGCAAAAGACATAATTTTTGCCTTTGATAAAGCTT
TGGACCGTATTGAGGAAGGAATCGATTCTAATCTTGTGAGATCCAGAACA
AAAGAGCAAAAATCTCATGAACAACATCTTCATCGTCTCGAATCCTTAGT
TTCTCTACCAGCAGAGCTCTGCGTGGAAGCCGTCAAAGACACCTGTTCCG
GTTGTGGAACAGTTCTACAGTCTGAATCTCCAAATATTCCAGGGTTTTTG
CCACCGGAGGTTCTGGCCAAGCAGCGTCTGCAAGAGGGAGCCCCTGCCAC
AAAGGTTGTAACAACTTCTGAACAGGAACAGGCCTTGGTAGAAGACAAGC
CAAAAAGAGTGGTGTGTCAGAGATGTTATCGACTGACCCATTACGGCGCG
ATCGAGCCAAACTTACGAGTTCCGCCCTCCATTTCTGAGGAAAATCGACA
CGTTCCCACTGAGCTCTCGCCGGAAAAGTTTCGTCGCAATCTAGAAGCTT
TGAAAAAGATCAATTCAGTGATCATTTACCTCGTTGACATCTTTGACTTT
CATGGTACCTTCATTCCTGATCTCCGAGATATCGTCGGTGCGAGGAATCC
CGTATTGCTTGCCGTGAATAAGGTGGACTTACTTCCATCTGACATGAAAG
CAACTCGCGTTGAAACTTGGATTAAGCAGGAGTGCGCGGAATTAGGTTTA
TCTGATATCGCTCGCGTGCATCTCATCTCGTCTACAAAGGGCCAAAACGT
TAGAGAGTTGCTGGCCGATGCCGTCAGGCTTGCAAAGAAGCGCCGTTCTG
ACATTTACGTGATTGGGGCAGCGAACGTGGGAAAGTCGACATTTATCAAT
CGACTTATCAGTCTACAGAATCGCAAACGCTCTAAACCACGCGGAAAGAA
TCGCGGAAGCGTTTCGTCAGTCACGGACGCCCTCACCACAAGTGTGGTTC
CAGGGACGACGCTTGATGTAATCAAAATTCCGCTTGGGTCATCCCTAAGC
TTGTACGATACTCCAGGTCTGATGATGCCACATCAATTGACAAATTATTT
GGATTCTAAAGATCTTCGGGCAGTGCTTCCTTCCAAGACCATTGAACGCG
TTTCATTTCGTCTCGGCGAAGGCAAGGCGCTCTACATAGGGGGAATGGCA
CGAATTGAAGTAGTGTCTGGAAGGCCTTTCTTCTTCACCTCGTTTTTCTC
ACCAGAGGTAAAGGTACATCCAGGAAAGGCGGAGGGTGCGATAGAGTTCA
CTGAAAAACATGTCGGGGAATTTCTCAAACCACCATCCTCGTTGGAAGCG
TATGAAGATCTGGGCGAATGGACGACGAAGTCTTTCACAGCCAAGGGTGA
AGGATGGAAGAGATCGTGTGCGGACATTGTGCTTTCTGGGTTGGGTTGGG
TGGCCCTAACAGGTGCTGGGGATCTCAACGTTCGGATATGCGTTCCCCGA
GGAGTCGGAGTGTTTACAAGAGAATCTCTGATGCCTTTTGAAACGCAAAA
AGGTGTAAGCTCGTACACAGGGGCAACGGCTGTCAACAGGGGGCAGCTCC
GGAAAAAGAAAAGTTACTAA
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