Gchil6792.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6792.t1
Unique NameGchil6792.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1196995..1197553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6792Gchil6792Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1196995..1197553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6792.t1Gchil6792.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1196995..1197553 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6792.t1.stop1Gchil6792.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1196995..1196997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6792.t1.CDS1Gchil6792.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1196995..1197276 -
Gchil6792.t1.CDS2Gchil6792.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1197382..1197435 -
Gchil6792.t1.CDS3Gchil6792.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1197542..1197553 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6792.t1.exon1Gchil6792.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1196995..1197276 -
Gchil6792.t1.exon2Gchil6792.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1197382..1197435 -
Gchil6792.t1.exon3Gchil6792.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1197542..1197553 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6792.t1.intron1Gchil6792.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1197277..1197381 -
Gchil6792.t1.intron2Gchil6792.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 1197436..1197541 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6792.t1.start1Gchil6792.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1197551..1197553 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6792.t1 ID=Gchil6792.t1|Name=Gchil6792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=116bp
MWIMCICLESSLELDRRYKVAKQNNMVGKTSTGNRASISRAHSPFAYRAM
EANNIRALTISRITALRFACITDGEAYLRYVSQPHNSVNSSDEYRCTIGG
YIGDALPVALLLRGH*
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spliced messenger RNA

>Gchil6792.t1 ID=Gchil6792.t1|Name=Gchil6792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00004416_pilon:1196995..1197553- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGATTATGTGTATCTGCTTGGAGTCAAGTCTTGAACTGGACCGGAG
ATACAAAGTTGCGAAGCAAAACAATATGGTAGGCAAAACGAGTACTGGAA
ACCGTGCTTCTATCTCACGCGCTCATTCGCCATTCGCCTATCGCGCCATG
GAAGCAAACAACATTCGTGCACTCACAATATCTCGCATCACGGCCTTGCG
CTTCGCATGTATCACTGATGGCGAAGCGTATTTGCGATATGTCTCTCAAC
CACACAACAGTGTCAATAGTTCCGACGAGTATCGGTGCACCATCGGTGGC
TACATCGGTGATGCACTTCCTGTAGCCCTTCTTCTCCGAGGTCACTGA
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protein sequence of Gchil6792.t1

>Gchil6792.t1 ID=Gchil6792.t1|Name=Gchil6792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MWIMCICLESSLELDRRYKVAKQNNMVGKTSTGNRASISRAHSPFAYRAM
EANNIRALTISRITALRFACITDGEAYLRYVSQPHNSVNSSDEYRCTIGG
YIGDALPVALLLRGH*
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mRNA from alignment at tig00004416_pilon:1196995..1197553-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6792.t1 ID=Gchil6792.t1|Name=Gchil6792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=559bp|location=Sequence derived from alignment at tig00004416_pilon:1196995..1197553- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGATTATGGTTCTTGAGATCAAATCCCTGCGTGTACACGTGTTCAC
GCCATCTTCCCATGCTATTCCCGAACCAGTTTACAACCTGCCCAACTTGT
TGACAATAATCTTACGAGTGTATCTGCTTGGAGTCAAGTCTTGAACTGGA
CCGGAGATACAAAGTTGCGAAGGTAAGACAGCTGCCTAGTATTCGAAACG
CGCCTATGTAGACATTACGAGCTCTTGAGCGCTTCCAAAACCGTACCGAA
GCTTACTTTTACAGCTCTCTTCCTTAGCAAAACAATATGGTAGGCAAAAC
GAGTACTGGAAACCGTGCTTCTATCTCACGCGCTCATTCGCCATTCGCCT
ATCGCGCCATGGAAGCAAACAACATTCGTGCACTCACAATATCTCGCATC
ACGGCCTTGCGCTTCGCATGTATCACTGATGGCGAAGCGTATTTGCGATA
TGTCTCTCAACCACACAACAGTGTCAATAGTTCCGACGAGTATCGGTGCA
CCATCGGTGGCTACATCGGTGATGCACTTCCTGTAGCCCTTCTTCTCCGA
GGTCACTGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1196995..1197553-

>Gchil6792.t1 ID=Gchil6792.t1|Name=Gchil6792.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00004416_pilon:1196995..1197553- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGATTATGTGTATCTGCTTGGAGTCAAGTCTTGAACTGGACCGGAG
ATACAAAGTTGCGAAGCAAAACAATATGGTAGGCAAAACGAGTACTGGAA
ACCGTGCTTCTATCTCACGCGCTCATTCGCCATTCGCCTATCGCGCCATG
GAAGCAAACAACATTCGTGCACTCACAATATCTCGCATCACGGCCTTGCG
CTTCGCATGTATCACTGATGGCGAAGCGTATTTGCGATATGTCTCTCAAC
CACACAACAGTGTCAATAGTTCCGACGAGTATCGGTGCACCATCGGTGGC
TACATCGGTGATGCACTTCCTGTAGCCCTTCTTCTCCGAGGTCACTGA
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