Gchil6782.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6782.t1
Unique NameGchil6782.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1165276..1166277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6782Gchil6782Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1165276..1166277 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6782.t1.stop1Gchil6782.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1165276..1165278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6782.t1.CDS1Gchil6782.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1165276..1166277 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6782.t1.exon1Gchil6782.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1165276..1166277 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6782.t1.start1Gchil6782.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1166275..1166277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6782.t1Gchil6782.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1165276..1166277 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6782.t1 ID=Gchil6782.t1|Name=Gchil6782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=334bp
MTEVIDSGGGLVPLAPRAGNHHLDWVRGDVEKISESSVRMTIRPESRVTK
NGIKQVRMETKSQVPGTNGRPRNGKGIQIRGAAYSVEEFEKKAREKVIED
SIRKRERLLAMKNRKSFHEQGRVSPAMHRPHSTFQGVEQNSENGHLFKAD
NITHLSFMVHRLIKTHKISSVIDVPCTSSTIWMPELLKILEFEVPRFHYR
CVVPDDEYLINGILQYKEYSSATVVKDPVAWASKLPKADLAFVWYGFGYL
SPQRAWKLIKSLRKSKTKYVIVPNFPDVKHNPGSASKSGRVNVRRAPYRF
DEPLRVVNDMSGDPSVRKQLFLYDLNNIRAGAL*
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spliced messenger RNA

>Gchil6782.t1 ID=Gchil6782.t1|Name=Gchil6782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00004416_pilon:1165276..1166277- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGAGGTCATTGACTCAGGAGGTGGGCTTGTTCCTTTGGCGCCACG
TGCTGGCAACCACCACCTCGACTGGGTTCGAGGAGATGTAGAAAAGATTT
CTGAGTCGTCGGTACGAATGACGATTCGCCCGGAATCTAGAGTCACGAAG
AACGGGATCAAGCAAGTCAGAATGGAAACGAAGTCTCAAGTGCCGGGGAC
AAACGGCCGTCCCAGAAATGGAAAGGGCATACAAATTCGCGGTGCTGCGT
ACAGCGTCGAAGAGTTTGAAAAGAAAGCGCGGGAGAAAGTCATTGAAGAC
TCGATACGAAAGCGAGAGAGGTTGCTAGCAATGAAGAACAGGAAGTCCTT
CCATGAACAAGGCCGGGTTTCCCCAGCAATGCATAGACCACATTCAACAT
TTCAGGGTGTTGAACAAAACTCCGAAAACGGTCACCTTTTCAAAGCCGAC
AACATTACTCATCTCTCGTTTATGGTACATAGATTGATCAAGACCCACAA
AATATCCAGCGTGATCGACGTTCCATGCACATCGAGTACCATATGGATGC
CCGAATTGTTGAAGATCCTCGAGTTTGAAGTGCCGAGGTTTCATTATCGT
TGCGTGGTGCCTGATGATGAATATCTTATCAATGGGATTCTTCAGTACAA
AGAGTACAGCTCAGCCACAGTGGTAAAGGACCCTGTCGCATGGGCATCGA
AGCTTCCAAAGGCTGACTTGGCTTTTGTATGGTATGGATTCGGGTATTTA
TCGCCACAGCGGGCGTGGAAGCTGATCAAGTCGTTGAGAAAATCGAAAAC
AAAGTACGTCATCGTGCCCAACTTTCCCGACGTGAAGCATAACCCGGGAT
CAGCTAGCAAAAGCGGTCGTGTAAATGTTCGGAGAGCACCATACCGTTTC
GATGAGCCGCTTCGAGTTGTGAACGATATGAGCGGGGATCCCTCTGTTCG
AAAGCAACTCTTTCTATACGATTTGAACAACATCAGAGCCGGTGCACTGT
GA
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protein sequence of Gchil6782.t1

>Gchil6782.t1 ID=Gchil6782.t1|Name=Gchil6782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=334bp
MTEVIDSGGGLVPLAPRAGNHHLDWVRGDVEKISESSVRMTIRPESRVTK
NGIKQVRMETKSQVPGTNGRPRNGKGIQIRGAAYSVEEFEKKAREKVIED
SIRKRERLLAMKNRKSFHEQGRVSPAMHRPHSTFQGVEQNSENGHLFKAD
NITHLSFMVHRLIKTHKISSVIDVPCTSSTIWMPELLKILEFEVPRFHYR
CVVPDDEYLINGILQYKEYSSATVVKDPVAWASKLPKADLAFVWYGFGYL
SPQRAWKLIKSLRKSKTKYVIVPNFPDVKHNPGSASKSGRVNVRRAPYRF
DEPLRVVNDMSGDPSVRKQLFLYDLNNIRAGAL*
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mRNA from alignment at tig00004416_pilon:1165276..1166277-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6782.t1 ID=Gchil6782.t1|Name=Gchil6782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00004416_pilon:1165276..1166277- (Gracilaria chilensis NLEC103_M9 male)
ATGACAGAGGTCATTGACTCAGGAGGTGGGCTTGTTCCTTTGGCGCCACG
TGCTGGCAACCACCACCTCGACTGGGTTCGAGGAGATGTAGAAAAGATTT
CTGAGTCGTCGGTACGAATGACGATTCGCCCGGAATCTAGAGTCACGAAG
AACGGGATCAAGCAAGTCAGAATGGAAACGAAGTCTCAAGTGCCGGGGAC
AAACGGCCGTCCCAGAAATGGAAAGGGCATACAAATTCGCGGTGCTGCGT
ACAGCGTCGAAGAGTTTGAAAAGAAAGCGCGGGAGAAAGTCATTGAAGAC
TCGATACGAAAGCGAGAGAGGTTGCTAGCAATGAAGAACAGGAAGTCCTT
CCATGAACAAGGCCGGGTTTCCCCAGCAATGCATAGACCACATTCAACAT
TTCAGGGTGTTGAACAAAACTCCGAAAACGGTCACCTTTTCAAAGCCGAC
AACATTACTCATCTCTCGTTTATGGTACATAGATTGATCAAGACCCACAA
AATATCCAGCGTGATCGACGTTCCATGCACATCGAGTACCATATGGATGC
CCGAATTGTTGAAGATCCTCGAGTTTGAAGTGCCGAGGTTTCATTATCGT
TGCGTGGTGCCTGATGATGAATATCTTATCAATGGGATTCTTCAGTACAA
AGAGTACAGCTCAGCCACAGTGGTAAAGGACCCTGTCGCATGGGCATCGA
AGCTTCCAAAGGCTGACTTGGCTTTTGTATGGTATGGATTCGGGTATTTA
TCGCCACAGCGGGCGTGGAAGCTGATCAAGTCGTTGAGAAAATCGAAAAC
AAAGTACGTCATCGTGCCCAACTTTCCCGACGTGAAGCATAACCCGGGAT
CAGCTAGCAAAAGCGGTCGTGTAAATGTTCGGAGAGCACCATACCGTTTC
GATGAGCCGCTTCGAGTTGTGAACGATATGAGCGGGGATCCCTCTGTTCG
AAAGCAACTCTTTCTATACGATTTGAACAACATCAGAGCCGGTGCACTGT
GA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1165276..1166277-

>Gchil6782.t1 ID=Gchil6782.t1|Name=Gchil6782.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00004416_pilon:1165276..1166277- (Gracilaria chilensis NLEC103_M9 male)
ATGACAGAGGTCATTGACTCAGGAGGTGGGCTTGTTCCTTTGGCGCCACG
TGCTGGCAACCACCACCTCGACTGGGTTCGAGGAGATGTAGAAAAGATTT
CTGAGTCGTCGGTACGAATGACGATTCGCCCGGAATCTAGAGTCACGAAG
AACGGGATCAAGCAAGTCAGAATGGAAACGAAGTCTCAAGTGCCGGGGAC
AAACGGCCGTCCCAGAAATGGAAAGGGCATACAAATTCGCGGTGCTGCGT
ACAGCGTCGAAGAGTTTGAAAAGAAAGCGCGGGAGAAAGTCATTGAAGAC
TCGATACGAAAGCGAGAGAGGTTGCTAGCAATGAAGAACAGGAAGTCCTT
CCATGAACAAGGCCGGGTTTCCCCAGCAATGCATAGACCACATTCAACAT
TTCAGGGTGTTGAACAAAACTCCGAAAACGGTCACCTTTTCAAAGCCGAC
AACATTACTCATCTCTCGTTTATGGTACATAGATTGATCAAGACCCACAA
AATATCCAGCGTGATCGACGTTCCATGCACATCGAGTACCATATGGATGC
CCGAATTGTTGAAGATCCTCGAGTTTGAAGTGCCGAGGTTTCATTATCGT
TGCGTGGTGCCTGATGATGAATATCTTATCAATGGGATTCTTCAGTACAA
AGAGTACAGCTCAGCCACAGTGGTAAAGGACCCTGTCGCATGGGCATCGA
AGCTTCCAAAGGCTGACTTGGCTTTTGTATGGTATGGATTCGGGTATTTA
TCGCCACAGCGGGCGTGGAAGCTGATCAAGTCGTTGAGAAAATCGAAAAC
AAAGTACGTCATCGTGCCCAACTTTCCCGACGTGAAGCATAACCCGGGAT
CAGCTAGCAAAAGCGGTCGTGTAAATGTTCGGAGAGCACCATACCGTTTC
GATGAGCCGCTTCGAGTTGTGAACGATATGAGCGGGGATCCCTCTGTTCG
AAAGCAACTCTTTCTATACGATTTGAACAACATCAGAGCCGGTGCACTGT
GA
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