Gchil6776.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6776.t1
Unique NameGchil6776.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1053941..1055287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6776Gchil6776Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1053941..1055287 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6776.t1.start1Gchil6776.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1053941..1053943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6776.t1.CDS1Gchil6776.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1053941..1055287 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6776.t1.exon1Gchil6776.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1053941..1055287 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6776.t1.stop1Gchil6776.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1055285..1055287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6776.t1Gchil6776.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1053941..1055287 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6776.t1 ID=Gchil6776.t1|Name=Gchil6776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=449bp
MGAPPSPSPPSPPSPSSSSSSSSSSAAPSPLPPPPPPPPEMRIDVAPDGH
VQLAVSLSSAVDPALVASVVAAVRHGIVHALPPPPPPPPQPSSAKPAPSR
VVAPVSVRDRVRQIDAHPAAHFAREFASSPALTADAASSKPPPPPPPPPH
SKQHHQYYRRPHAHHQQPALSERTISMPARARTDAQFMVATAAVDARRSS
PTSSLSSSSPPSTRSLSDLTDDDARVAVASRLALPDDAMAAIVPSSPYVR
SHTFVRDDDADHSVEYVASDRFAQWDVPRDVPPRSSPWRLLPSWAALRGK
RPPLERAVHDATLASAAPSRKRARQRARTLFLRPYDTRTHWMEFSCALSV
ERVLAEVASVVKTLHYDVWRRAGENKLRCVRRISDAHHMHVVVVVGCVAL
PRASLSVVRLRRAKGDRNRTEHWRFQVLFRELVDRLRASGVDVRSEQS*
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spliced messenger RNA

>Gchil6776.t1 ID=Gchil6776.t1|Name=Gchil6776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00004416_pilon:1053941..1055287+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCGCCGCCGTCGCCGTCGCCACCGTCGCCACcgtcgccgtcgtc
gtcgtcgtcgtcgtcgtcgtcgtcgGCGGCCCCGTCCccgctgccgccgc
cgccgccgccgccgccgGAGATGCGCATCGACGTCGCGCCCGACGGCCAT
GTGCAGCTGGCCGTGTCGCTGTCGTCCGCCGTCGACCCCGCGCTGGTGGC
CAGCGTTGTCGCTGCCGTGCGCCACGGCATCGTGCACGCCTTgccaccgc
cgccaccgccgccaccacagccgtcttccgcgaagccggcgccgtcgcgc
gtcgtcgctcccgtctccgTACGCGACCGCGTGCGTCAGATCGATGCCCA
CCCCGCCGCCCACTTTGCGCGCGAGTTCGCGTCCTCACCCGCGCTCACTG
CTGACGCAGCCTCCTCTAAgccgccgccgccgccgccgccgccgccgcAC
TCCAAGCAACACCACCAATACTACCGCCGCCCCCACGCGCATCACCAGCA
GCCCGCCCTCAGCGAACGCACCATCTCCATGCCTGCGCGAGCGCGCACTG
ACGCCCAATTCATGGTCGCCACGGCTGCTGTCGATGCCCGTCGCTCGTCG
CCCACCTCTTCTCTGTCAAGCTCGTCGCCGCCCAGCACGCGTTCACTCTC
CGACCTCACCGACGATGACGCGCGCGTCGCCGTGGCCTCGCGTCTCGCGC
TGCCCGATGACGCTATGGCCGCCATCGTGCCCTCCTCGCCATACGTGCGC
TCACACACCTTTGTGCGTGACGACGACGCAGATCATTCCGTCGAATACGT
CGCCTCAGATCGATTTGCGCAGTGGGATGTCCCGAGAGATGTGCCGCCAC
GCTCCTCCCCCTGGCGTTTGCTTCCGTCTTGGGCCGCCCTGCGCGGAAAG
CGACCACCGTTAGAACGTGCCGTTCATGACGCCACCTTGGCATCTGCCGC
CCCCTCGCGAAAACGTGCGCGTCAACGCGCTCGCACTTTGTTCCTACGAC
CGTACGACACGCGTACGCACTGGATGGAGTTTTCATGCGCGCTCAGCGTG
GAACGTGTGTTGGCGGAGGTGGCCTCTGTTGTAAAGACGCTACATTACGA
TGTTTGGCGTCGCGCAGGTGAGAATAAGTTGCGTTGTGTGCGTCGTATCT
CGGATGCTCATCATATGCACGTCGTTGTTGTCGTTGGTTGTGTCGCGCTG
CCACGCGCGTCGCTCAGCGTCGTGCGTCTGCGTCGTGCAAAGGGAGACCG
CAATCGCACCGAACACTGGCGCTTTCAGGTGCTGTTTCGCGAGCTTGTCG
ACCGTCTACGCGCCAGCGGCGTCGACGTGCGCAGCGAACAGTCGTGA
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protein sequence of Gchil6776.t1

>Gchil6776.t1 ID=Gchil6776.t1|Name=Gchil6776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=449bp
MGAPPSPSPPSPPSPSSSSSSSSSSAAPSPLPPPPPPPPEMRIDVAPDGH
VQLAVSLSSAVDPALVASVVAAVRHGIVHALPPPPPPPPQPSSAKPAPSR
VVAPVSVRDRVRQIDAHPAAHFAREFASSPALTADAASSKPPPPPPPPPH
SKQHHQYYRRPHAHHQQPALSERTISMPARARTDAQFMVATAAVDARRSS
PTSSLSSSSPPSTRSLSDLTDDDARVAVASRLALPDDAMAAIVPSSPYVR
SHTFVRDDDADHSVEYVASDRFAQWDVPRDVPPRSSPWRLLPSWAALRGK
RPPLERAVHDATLASAAPSRKRARQRARTLFLRPYDTRTHWMEFSCALSV
ERVLAEVASVVKTLHYDVWRRAGENKLRCVRRISDAHHMHVVVVVGCVAL
PRASLSVVRLRRAKGDRNRTEHWRFQVLFRELVDRLRASGVDVRSEQS*
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mRNA from alignment at tig00004416_pilon:1053941..1055287+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6776.t1 ID=Gchil6776.t1|Name=Gchil6776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at tig00004416_pilon:1053941..1055287+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCGCCGCCGTCGCCGTCGCCACCGTCGCCACcgtcgccgtcgtc
gtcgtcgtcgtcgtcgtcgtcgtcgGCGGCCCCGTCCccgctgccgccgc
cgccgccgccgccgccgGAGATGCGCATCGACGTCGCGCCCGACGGCCAT
GTGCAGCTGGCCGTGTCGCTGTCGTCCGCCGTCGACCCCGCGCTGGTGGC
CAGCGTTGTCGCTGCCGTGCGCCACGGCATCGTGCACGCCTTgccaccgc
cgccaccgccgccaccacagccgtcttccgcgaagccggcgccgtcgcgc
gtcgtcgctcccgtctccgTACGCGACCGCGTGCGTCAGATCGATGCCCA
CCCCGCCGCCCACTTTGCGCGCGAGTTCGCGTCCTCACCCGCGCTCACTG
CTGACGCAGCCTCCTCTAAgccgccgccgccgccgccgccgccgccgcAC
TCCAAGCAACACCACCAATACTACCGCCGCCCCCACGCGCATCACCAGCA
GCCCGCCCTCAGCGAACGCACCATCTCCATGCCTGCGCGAGCGCGCACTG
ACGCCCAATTCATGGTCGCCACGGCTGCTGTCGATGCCCGTCGCTCGTCG
CCCACCTCTTCTCTGTCAAGCTCGTCGCCGCCCAGCACGCGTTCACTCTC
CGACCTCACCGACGATGACGCGCGCGTCGCCGTGGCCTCGCGTCTCGCGC
TGCCCGATGACGCTATGGCCGCCATCGTGCCCTCCTCGCCATACGTGCGC
TCACACACCTTTGTGCGTGACGACGACGCAGATCATTCCGTCGAATACGT
CGCCTCAGATCGATTTGCGCAGTGGGATGTCCCGAGAGATGTGCCGCCAC
GCTCCTCCCCCTGGCGTTTGCTTCCGTCTTGGGCCGCCCTGCGCGGAAAG
CGACCACCGTTAGAACGTGCCGTTCATGACGCCACCTTGGCATCTGCCGC
CCCCTCGCGAAAACGTGCGCGTCAACGCGCTCGCACTTTGTTCCTACGAC
CGTACGACACGCGTACGCACTGGATGGAGTTTTCATGCGCGCTCAGCGTG
GAACGTGTGTTGGCGGAGGTGGCCTCTGTTGTAAAGACGCTACATTACGA
TGTTTGGCGTCGCGCAGGTGAGAATAAGTTGCGTTGTGTGCGTCGTATCT
CGGATGCTCATCATATGCACGTCGTTGTTGTCGTTGGTTGTGTCGCGCTG
CCACGCGCGTCGCTCAGCGTCGTGCGTCTGCGTCGTGCAAAGGGAGACCG
CAATCGCACCGAACACTGGCGCTTTCAGGTGCTGTTTCGCGAGCTTGTCG
ACCGTCTACGCGCCAGCGGCGTCGACGTGCGCAGCGAACAGTCGTGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:1053941..1055287+

>Gchil6776.t1 ID=Gchil6776.t1|Name=Gchil6776.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1347bp|location=Sequence derived from alignment at tig00004416_pilon:1053941..1055287+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCGCCGCCGTCGCCGTCGCCACCGTCGCCACcgtcgccgtcgtc
gtcgtcgtcgtcgtcgtcgtcgtcgGCGGCCCCGTCCccgctgccgccgc
cgccgccgccgccgccgGAGATGCGCATCGACGTCGCGCCCGACGGCCAT
GTGCAGCTGGCCGTGTCGCTGTCGTCCGCCGTCGACCCCGCGCTGGTGGC
CAGCGTTGTCGCTGCCGTGCGCCACGGCATCGTGCACGCCTTgccaccgc
cgccaccgccgccaccacagccgtcttccgcgaagccggcgccgtcgcgc
gtcgtcgctcccgtctccgTACGCGACCGCGTGCGTCAGATCGATGCCCA
CCCCGCCGCCCACTTTGCGCGCGAGTTCGCGTCCTCACCCGCGCTCACTG
CTGACGCAGCCTCCTCTAAgccgccgccgccgccgccgccgccgccgcAC
TCCAAGCAACACCACCAATACTACCGCCGCCCCCACGCGCATCACCAGCA
GCCCGCCCTCAGCGAACGCACCATCTCCATGCCTGCGCGAGCGCGCACTG
ACGCCCAATTCATGGTCGCCACGGCTGCTGTCGATGCCCGTCGCTCGTCG
CCCACCTCTTCTCTGTCAAGCTCGTCGCCGCCCAGCACGCGTTCACTCTC
CGACCTCACCGACGATGACGCGCGCGTCGCCGTGGCCTCGCGTCTCGCGC
TGCCCGATGACGCTATGGCCGCCATCGTGCCCTCCTCGCCATACGTGCGC
TCACACACCTTTGTGCGTGACGACGACGCAGATCATTCCGTCGAATACGT
CGCCTCAGATCGATTTGCGCAGTGGGATGTCCCGAGAGATGTGCCGCCAC
GCTCCTCCCCCTGGCGTTTGCTTCCGTCTTGGGCCGCCCTGCGCGGAAAG
CGACCACCGTTAGAACGTGCCGTTCATGACGCCACCTTGGCATCTGCCGC
CCCCTCGCGAAAACGTGCGCGTCAACGCGCTCGCACTTTGTTCCTACGAC
CGTACGACACGCGTACGCACTGGATGGAGTTTTCATGCGCGCTCAGCGTG
GAACGTGTGTTGGCGGAGGTGGCCTCTGTTGTAAAGACGCTACATTACGA
TGTTTGGCGTCGCGCAGGTGAGAATAAGTTGCGTTGTGTGCGTCGTATCT
CGGATGCTCATCATATGCACGTCGTTGTTGTCGTTGGTTGTGTCGCGCTG
CCACGCGCGTCGCTCAGCGTCGTGCGTCTGCGTCGTGCAAAGGGAGACCG
CAATCGCACCGAACACTGGCGCTTTCAGGTGCTGTTTCGCGAGCTTGTCG
ACCGTCTACGCGCCAGCGGCGTCGACGTGCGCAGCGAACAGTCGTGA
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