Gchil6773.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6773.t1
Unique NameGchil6773.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length488
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:1016100..1017563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703929.1
PFAMsEamA
Max annot lvl2759|Eukaryota
Evalue2.4e-93
EggNOG OGsCOG0697@1|root,KOG3912@2759|Eukaryota
Descriptionnegative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
COG categoryEG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6773Gchil6773Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 1016100..1017563 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6773.t1.stop1Gchil6773.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 1016100..1016102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6773.t1.CDS1Gchil6773.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 1016100..1017563 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6773.t1.exon1Gchil6773.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 1016100..1017563 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6773.t1.start1Gchil6773.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 1017561..1017563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6773.t1Gchil6773.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 1016100..1017563 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6773.t1 ID=Gchil6773.t1|Name=Gchil6773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=488bp
MKLSTPTAVGGMIVFGTACSLLAKLIYSVQAPNIYGGQSNYEKPWLQVLA
MFTGMSICILLDLPRRRAHARQPAADTPATPTEERLLLVAHSPDAQKPPA
SVWIISIPTLFDLFATACGTTGLLYTTVSVYQMLRGAMLVWTAILSIVFL
KRRLTTLNYAGIVLCVVGIVMVGLANIWVEQSSASRNEIIFGITVILVGQ
VLQAAQTVMEEFLLQDLQMSSVRVVAWEGLFGMAHCLLWVFPIVYLLPGG
DHGHLEDVLDAFYMLTHSWAVAGIILTDMTMMLFYNVFGMEVTDSLSAVH
RVVIETLRTLAVWIADLVIFYLISGRTLGEPLTQYSWLQLLGFCVLVMGT
ILYNFDNLKADYDKRRAKKHVRVLATVPEMEVVSVGEYGAMEVMEERKKA
FAAVPLAVGGDEEWEEDEGEEGEEEGLGGSYYGQTVGSASHSSYLLATAT
PPLSLSSSLVHRRGGQHGGQHGATTTTTTTTTTTGGQ*
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spliced messenger RNA

>Gchil6773.t1 ID=Gchil6773.t1|Name=Gchil6773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00004416_pilon:1016100..1017563- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTATCTACGCCCACCGCCGTCGGCGGCATGATTGTCTTCGGCAC
CGCGTGCTCGCTGCTCGCAAAACTCATCTACTCCGTGCAAGCGCCCAACA
TTTACGGCGGCCAATCGAACTACGAGAAGCCTTGGCTACAAGTATTGGCC
ATGTTCACGGGTATGTCAATCTGCATTCTGCTCGATCTTCCGCGTCGCCG
AGCACACGCGCGGCAGCCCGCCGCCGACACGCCTGCCACGCCCACCGAAG
AGCGGCTGCTGCTGGTGGCGCACTCGCCGGACGCCCAGAAGCCACCGGCA
TCGGTGTGGATTATTAGCATCCCAACTCTGTTTGACTTGTTTGCTACCGC
TTGCGGCACCACCGGCTTGTTATACACCACTGTCTCCGTGTATCAGATGT
TGCGTGGCGCCATGCTCGTTTGGACCGCCATCTTGTCCATCGTGTTCCTC
AAGCGCCGCCTCACCACGCTCAACTATGCCGGCATCGTGCTGTGCGTGGT
GGGTATTGTCATGGTCGGGCTGGCCAACATCTGGGTGGAGCAGTCGTCGG
CATCTAGAAACGAGATCATCTTCGGCATCACGGTGATTCTCGTGGGGCAG
GTGCTGCAGGCGGCGCAAACGGTGATGGAAGAGTTTTTGCTTCAGGATCT
GCAAATGTCGTCGGTGAGAGTGGTGGCGTGGGAGGGGCTGTTTGGTATGG
CGCACTGTTTACTGTGGGTGTTCCCCATCGTGTACCTTCTGCCTGGAGGC
GACCACGGCCACCTGGAAGACGTGTTGGACGCGTTTTACATGCTGACGCA
TTCGTGGGCAGTGGCGGGCATTATCTTAACCGACATGACCATGATGCTGT
TCTACAACGTGTTCGGCATGGAGGTGACCGACTCGTTGAGCGCGGTGCAC
CGCGTGGTGATCGAGACGCTGCGCACGCTGGCGGTGTGGATCGCGGATCT
GGTGATCTTCTACTTGATATCCGGGCGCACGCTCGGCGAGCCGCTGACGC
AATACTCGTGGCTGCAACTGTTGGGGTTTTGCGTGCTGGTGATGGGCACG
ATTCTGTACAACTTTGACAACCTCAAGGCGGACTACGACAAGAGACGGGC
CAAGAAGCATGTGCGCGTGTTGGCGACGGTGCCGGAGATGGAGGTGGTAA
GCGTTGGCGAGTACGGGGCGATGGAGGTGATGGAAGAGCGGAAGAAGGCG
TTTGCGGCCGTGCCTTTAGCTGTGGGCGGCGATGAGGAGTGGGAGGAGGA
TGAGGGGGAGGAGGGGGAGGAGGAAGGATTGGGTGGCTCGTACTACGGGC
AGACGGTGGGCAGCGCGTCGCACAGCTCGTATCTGCTGGCGACGGCCACG
CCGCCGCTCTCGCTGTCCAGCTCGCTGGTGCACCGCCGCGGCGGCCAGCA
CGGCGGCCAGCACGGGGCGACGACGACGACGACGACGACGACGACGACGA
CGGGTGGGCAGTAG
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protein sequence of Gchil6773.t1

>Gchil6773.t1 ID=Gchil6773.t1|Name=Gchil6773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=488bp
MKLSTPTAVGGMIVFGTACSLLAKLIYSVQAPNIYGGQSNYEKPWLQVLA
MFTGMSICILLDLPRRRAHARQPAADTPATPTEERLLLVAHSPDAQKPPA
SVWIISIPTLFDLFATACGTTGLLYTTVSVYQMLRGAMLVWTAILSIVFL
KRRLTTLNYAGIVLCVVGIVMVGLANIWVEQSSASRNEIIFGITVILVGQ
VLQAAQTVMEEFLLQDLQMSSVRVVAWEGLFGMAHCLLWVFPIVYLLPGG
DHGHLEDVLDAFYMLTHSWAVAGIILTDMTMMLFYNVFGMEVTDSLSAVH
RVVIETLRTLAVWIADLVIFYLISGRTLGEPLTQYSWLQLLGFCVLVMGT
ILYNFDNLKADYDKRRAKKHVRVLATVPEMEVVSVGEYGAMEVMEERKKA
FAAVPLAVGGDEEWEEDEGEEGEEEGLGGSYYGQTVGSASHSSYLLATAT
PPLSLSSSLVHRRGGQHGGQHGATTTTTTTTTTTGGQ*
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mRNA from alignment at tig00004416_pilon:1016100..1017563-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6773.t1 ID=Gchil6773.t1|Name=Gchil6773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00004416_pilon:1016100..1017563- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTATCTACGCCCACCGCCGTCGGCGGCATGATTGTCTTCGGCAC
CGCGTGCTCGCTGCTCGCAAAACTCATCTACTCCGTGCAAGCGCCCAACA
TTTACGGCGGCCAATCGAACTACGAGAAGCCTTGGCTACAAGTATTGGCC
ATGTTCACGGGTATGTCAATCTGCATTCTGCTCGATCTTCCGCGTCGCCG
AGCACACGCGCGGCAGCCCGCCGCCGACACGCCTGCCACGCCCACCGAAG
AGCGGCTGCTGCTGGTGGCGCACTCGCCGGACGCCCAGAAGCCACCGGCA
TCGGTGTGGATTATTAGCATCCCAACTCTGTTTGACTTGTTTGCTACCGC
TTGCGGCACCACCGGCTTGTTATACACCACTGTCTCCGTGTATCAGATGT
TGCGTGGCGCCATGCTCGTTTGGACCGCCATCTTGTCCATCGTGTTCCTC
AAGCGCCGCCTCACCACGCTCAACTATGCCGGCATCGTGCTGTGCGTGGT
GGGTATTGTCATGGTCGGGCTGGCCAACATCTGGGTGGAGCAGTCGTCGG
CATCTAGAAACGAGATCATCTTCGGCATCACGGTGATTCTCGTGGGGCAG
GTGCTGCAGGCGGCGCAAACGGTGATGGAAGAGTTTTTGCTTCAGGATCT
GCAAATGTCGTCGGTGAGAGTGGTGGCGTGGGAGGGGCTGTTTGGTATGG
CGCACTGTTTACTGTGGGTGTTCCCCATCGTGTACCTTCTGCCTGGAGGC
GACCACGGCCACCTGGAAGACGTGTTGGACGCGTTTTACATGCTGACGCA
TTCGTGGGCAGTGGCGGGCATTATCTTAACCGACATGACCATGATGCTGT
TCTACAACGTGTTCGGCATGGAGGTGACCGACTCGTTGAGCGCGGTGCAC
CGCGTGGTGATCGAGACGCTGCGCACGCTGGCGGTGTGGATCGCGGATCT
GGTGATCTTCTACTTGATATCCGGGCGCACGCTCGGCGAGCCGCTGACGC
AATACTCGTGGCTGCAACTGTTGGGGTTTTGCGTGCTGGTGATGGGCACG
ATTCTGTACAACTTTGACAACCTCAAGGCGGACTACGACAAGAGACGGGC
CAAGAAGCATGTGCGCGTGTTGGCGACGGTGCCGGAGATGGAGGTGGTAA
GCGTTGGCGAGTACGGGGCGATGGAGGTGATGGAAGAGCGGAAGAAGGCG
TTTGCGGCCGTGCCTTTAGCTGTGGGCGGCGATGAGGAGTGGGAGGAGGA
TGAGGGGGAGGAGGGGGAGGAGGAAGGATTGGGTGGCTCGTACTACGGGC
AGACGGTGGGCAGCGCGTCGCACAGCTCGTATCTGCTGGCGACGGCCACG
CCGCCGCTCTCGCTGTCCAGCTCGCTGGTGCACCGCCGCGGCGGCCAGCA
CGGCGGCCAGCACGGGGCGACGACGACGACGACGACGACGACGACGACGA
CGGGTGGGCAGTAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:1016100..1017563-

>Gchil6773.t1 ID=Gchil6773.t1|Name=Gchil6773.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1464bp|location=Sequence derived from alignment at tig00004416_pilon:1016100..1017563- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTATCTACGCCCACCGCCGTCGGCGGCATGATTGTCTTCGGCAC
CGCGTGCTCGCTGCTCGCAAAACTCATCTACTCCGTGCAAGCGCCCAACA
TTTACGGCGGCCAATCGAACTACGAGAAGCCTTGGCTACAAGTATTGGCC
ATGTTCACGGGTATGTCAATCTGCATTCTGCTCGATCTTCCGCGTCGCCG
AGCACACGCGCGGCAGCCCGCCGCCGACACGCCTGCCACGCCCACCGAAG
AGCGGCTGCTGCTGGTGGCGCACTCGCCGGACGCCCAGAAGCCACCGGCA
TCGGTGTGGATTATTAGCATCCCAACTCTGTTTGACTTGTTTGCTACCGC
TTGCGGCACCACCGGCTTGTTATACACCACTGTCTCCGTGTATCAGATGT
TGCGTGGCGCCATGCTCGTTTGGACCGCCATCTTGTCCATCGTGTTCCTC
AAGCGCCGCCTCACCACGCTCAACTATGCCGGCATCGTGCTGTGCGTGGT
GGGTATTGTCATGGTCGGGCTGGCCAACATCTGGGTGGAGCAGTCGTCGG
CATCTAGAAACGAGATCATCTTCGGCATCACGGTGATTCTCGTGGGGCAG
GTGCTGCAGGCGGCGCAAACGGTGATGGAAGAGTTTTTGCTTCAGGATCT
GCAAATGTCGTCGGTGAGAGTGGTGGCGTGGGAGGGGCTGTTTGGTATGG
CGCACTGTTTACTGTGGGTGTTCCCCATCGTGTACCTTCTGCCTGGAGGC
GACCACGGCCACCTGGAAGACGTGTTGGACGCGTTTTACATGCTGACGCA
TTCGTGGGCAGTGGCGGGCATTATCTTAACCGACATGACCATGATGCTGT
TCTACAACGTGTTCGGCATGGAGGTGACCGACTCGTTGAGCGCGGTGCAC
CGCGTGGTGATCGAGACGCTGCGCACGCTGGCGGTGTGGATCGCGGATCT
GGTGATCTTCTACTTGATATCCGGGCGCACGCTCGGCGAGCCGCTGACGC
AATACTCGTGGCTGCAACTGTTGGGGTTTTGCGTGCTGGTGATGGGCACG
ATTCTGTACAACTTTGACAACCTCAAGGCGGACTACGACAAGAGACGGGC
CAAGAAGCATGTGCGCGTGTTGGCGACGGTGCCGGAGATGGAGGTGGTAA
GCGTTGGCGAGTACGGGGCGATGGAGGTGATGGAAGAGCGGAAGAAGGCG
TTTGCGGCCGTGCCTTTAGCTGTGGGCGGCGATGAGGAGTGGGAGGAGGA
TGAGGGGGAGGAGGGGGAGGAGGAAGGATTGGGTGGCTCGTACTACGGGC
AGACGGTGGGCAGCGCGTCGCACAGCTCGTATCTGCTGGCGACGGCCACG
CCGCCGCTCTCGCTGTCCAGCTCGCTGGTGCACCGCCGCGGCGGCCAGCA
CGGCGGCCAGCACGGGGCGACGACGACGACGACGACGACGACGACGACGA
CGGGTGGGCAGTAG
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