Gchil6763.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6763.t1
Unique NameGchil6763.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:949451..950677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI2G50500.1
PFAMsAminotran_1_2
Max annot lvl35493|Streptophyta
KEGG rclassRC00006
KEGG koko:K14454
KEGG ReactionR00355,R00694,R00734,R00896,R02433,R02619,R05052
KEGG Pathwayko00220,ko00250,ko00270,ko00330,ko00350,ko00360,ko00400,ko00710,ko00950,ko00960,ko01100,ko01110,ko01120,ko01130,ko01200,ko01210,ko01230,map00220,map00250,map00270,map00330,map00350,map00360,map00400,map00710,map00950,map00960,map01100,map01110,map01120,map01130,map01200,map01210,map01230
KEGG ModuleM00170,M00171
GOsGO:0003674,GO:0003824,GO:0004069,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005777,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006103,GO:0006520,GO:0006522,GO:0006531,GO:0006536,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008483,GO:0009060,GO:0009064,GO:0009066,GO:0009078,GO:0009506,GO:0009536,GO:0009987,GO:0010150,GO:0015980,GO:0016020,GO:0016740,GO:0016769,GO:0016999,GO:0017144,GO:0019752,GO:0030054,GO:0030312,GO:0031090,GO:0032501,GO:0032502,GO:0042579,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0051186,GO:0055044,GO:0055114,GO:0071704,GO:0071944,GO:0072350,GO:0090693,GO:0098588,GO:0098805,GO:0099402,GO:1901564,GO:1901605
Evalue6.29e-166
EggNOG OGsCOG1448@1|root,KOG1411@2759|Eukaryota,37P2V@33090|Viridiplantae,3G8KV@35493|Streptophyta,3KSGB@4447|Liliopsida,3ID4F@38820|Poales
EC2.6.1.1
DescriptionAspartate aminotransferase
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6763Gchil6763Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 949451..950677 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6763.t1.stop1Gchil6763.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 949451..949453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6763.t1.CDS1Gchil6763.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 949451..950677 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6763.t1.exon1Gchil6763.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 949451..950677 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6763.t1.start1Gchil6763.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 950675..950677 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6763.t1Gchil6763.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 949451..950677 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6763.t1 ID=Gchil6763.t1|Name=Gchil6763.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=409bp
MSIFDQVPQAPPDPILAVSAAYRADPSPKKINLGVGAYRTDDGAPYVLPI
VKEFERQFANDPSITHEYLPQDGLTEFNNLSARLILGPDSAALKQNRVVT
VQALSGTGALRIGFAFIANFIGQRLVYIPNPTWSNHRNVVPQAGLPPTEN
YRYFDPNTRGVDIEGLLVDLSSAVEGSIVVFHGCAHNPTGADPSRAEWQR
ILAVVKSRKLVPFFDNAYQGFASGDLNTDAWSTRLFVNSGIDVLVAQSYA
KNMGMYGERVGALNVVSSSPKSVAAVRSQLKQLIRAMYSSPPLHGARIAA
AILSDEDAFRKWELELEKMSARIHAMRCRLRDALNRNGAPGNWDHIVNQI
GMFSFTGLTSQQVAFMRDRYHIYMTTNGRMSMAGLTESTVDYVADAMKDA
IESVVKQD*
back to top

spliced messenger RNA

>Gchil6763.t1 ID=Gchil6763.t1|Name=Gchil6763.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00004416_pilon:949451..950677- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATCTTCGACCAAGTGCCACAGGCCCCACCTGATCCCATTCTCGC
CGTGTCCGCCGCTTATCGAGCAGATCCGTCCCCAAAGAAAATCAATCTCG
GAGTTGGAGCATATCGCACGGATGATGGCGCACCTTATGTGCTACCGATT
GTGAAGGAGTTTGAAAGACAATTCGCCAATGATCCTAGTATCACCCATGA
ATATTTACCACAAGATGGGTTGACAGAGTTTAACAATCTTTCCGCTCGTC
TCATACTCGGCCCTGATAGTGCGGCCCTCAAACAGAATCGCGTCGTCACC
GTGCAGGCTCTTTCAGGAACTGGTGCCCTGCGCATTGGATTTGCATTCAT
CGCTAATTTTATTGGACAGCGTCTTGTGTACATCCCAAACCCTACCTGGT
CAAATCATCGAAACGTTGTTCCACAAGCTGGATTACCCCCAACCGAAAAC
TATCGTTACTTTGACCCCAACACGCGAGGCGTCGACATCGAAGGACTGCT
GGTGGACTTGAGCTCTGCTGTTGAAGGATCTATCGTCGTGTTTCATGGAT
GCGCTCACAACCCTACTGGCGCTGATCCTTCAAGAGCTGAATGGCAACGC
ATTCTTGCAGTTGTAAAATCAAGGAAACTTGTTCCATTCTTTGATAACGC
GTACCAGGGCTTTGCATCTGGGGACTTGAACACAGATGCATGGTCCACTA
GGCTGTTTGTAAACTCTGGAATCGATGTGTTAGTCGCTCAATCATATGCA
AAAAATATGGGAATGTACGGAGAACGGGTTGGGGCACTCAACGTGGTATC
GTCGTCCCCAAAGTCAGTTGCTGCAGTTAGGAGTCAGTTAAAACAGTTGA
TACGAGCCATGTATAGTAGTCCTCCTTTACATGGAGCTCGCATCGCGGCT
GCAATCTTGTCGGATGAAGATGCTTTCCGGAAGTGGGAACTGGAACTGGA
AAAGATGTCAGCTCGCATCCATGCCATGAGATGTCGGCTGAGAGACGCCT
TGAACAGGAATGGCGCACCTGGAAACTGGGATCACATTGTGAACCAGATT
GGCATGTTCAGTTTTACAGGATTGACGAGTCAGCAAGTTGCGTTCATGCG
AGACAGGTACCATATCTACATGACCACTAATGGGCGAATGTCCATGGCCG
GTCTGACAGAAAGTACTGTTGATTACGTCGCTGATGCGATGAAGGACGCC
ATTGAGAGCGTTGTCAAGCAGGACTGA
back to top

protein sequence of Gchil6763.t1

>Gchil6763.t1 ID=Gchil6763.t1|Name=Gchil6763.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=409bp
MSIFDQVPQAPPDPILAVSAAYRADPSPKKINLGVGAYRTDDGAPYVLPI
VKEFERQFANDPSITHEYLPQDGLTEFNNLSARLILGPDSAALKQNRVVT
VQALSGTGALRIGFAFIANFIGQRLVYIPNPTWSNHRNVVPQAGLPPTEN
YRYFDPNTRGVDIEGLLVDLSSAVEGSIVVFHGCAHNPTGADPSRAEWQR
ILAVVKSRKLVPFFDNAYQGFASGDLNTDAWSTRLFVNSGIDVLVAQSYA
KNMGMYGERVGALNVVSSSPKSVAAVRSQLKQLIRAMYSSPPLHGARIAA
AILSDEDAFRKWELELEKMSARIHAMRCRLRDALNRNGAPGNWDHIVNQI
GMFSFTGLTSQQVAFMRDRYHIYMTTNGRMSMAGLTESTVDYVADAMKDA
IESVVKQD*
back to top

mRNA from alignment at tig00004416_pilon:949451..950677-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6763.t1 ID=Gchil6763.t1|Name=Gchil6763.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00004416_pilon:949451..950677- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCATCTTCGACCAAGTGCCACAGGCCCCACCTGATCCCATTCTCGC
CGTGTCCGCCGCTTATCGAGCAGATCCGTCCCCAAAGAAAATCAATCTCG
GAGTTGGAGCATATCGCACGGATGATGGCGCACCTTATGTGCTACCGATT
GTGAAGGAGTTTGAAAGACAATTCGCCAATGATCCTAGTATCACCCATGA
ATATTTACCACAAGATGGGTTGACAGAGTTTAACAATCTTTCCGCTCGTC
TCATACTCGGCCCTGATAGTGCGGCCCTCAAACAGAATCGCGTCGTCACC
GTGCAGGCTCTTTCAGGAACTGGTGCCCTGCGCATTGGATTTGCATTCAT
CGCTAATTTTATTGGACAGCGTCTTGTGTACATCCCAAACCCTACCTGGT
CAAATCATCGAAACGTTGTTCCACAAGCTGGATTACCCCCAACCGAAAAC
TATCGTTACTTTGACCCCAACACGCGAGGCGTCGACATCGAAGGACTGCT
GGTGGACTTGAGCTCTGCTGTTGAAGGATCTATCGTCGTGTTTCATGGAT
GCGCTCACAACCCTACTGGCGCTGATCCTTCAAGAGCTGAATGGCAACGC
ATTCTTGCAGTTGTAAAATCAAGGAAACTTGTTCCATTCTTTGATAACGC
GTACCAGGGCTTTGCATCTGGGGACTTGAACACAGATGCATGGTCCACTA
GGCTGTTTGTAAACTCTGGAATCGATGTGTTAGTCGCTCAATCATATGCA
AAAAATATGGGAATGTACGGAGAACGGGTTGGGGCACTCAACGTGGTATC
GTCGTCCCCAAAGTCAGTTGCTGCAGTTAGGAGTCAGTTAAAACAGTTGA
TACGAGCCATGTATAGTAGTCCTCCTTTACATGGAGCTCGCATCGCGGCT
GCAATCTTGTCGGATGAAGATGCTTTCCGGAAGTGGGAACTGGAACTGGA
AAAGATGTCAGCTCGCATCCATGCCATGAGATGTCGGCTGAGAGACGCCT
TGAACAGGAATGGCGCACCTGGAAACTGGGATCACATTGTGAACCAGATT
GGCATGTTCAGTTTTACAGGATTGACGAGTCAGCAAGTTGCGTTCATGCG
AGACAGGTACCATATCTACATGACCACTAATGGGCGAATGTCCATGGCCG
GTCTGACAGAAAGTACTGTTGATTACGTCGCTGATGCGATGAAGGACGCC
ATTGAGAGCGTTGTCAAGCAGGACTGA
back to top

Coding sequence (CDS) from alignment at tig00004416_pilon:949451..950677-

>Gchil6763.t1 ID=Gchil6763.t1|Name=Gchil6763.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00004416_pilon:949451..950677- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCATCTTCGACCAAGTGCCACAGGCCCCACCTGATCCCATTCTCGC
CGTGTCCGCCGCTTATCGAGCAGATCCGTCCCCAAAGAAAATCAATCTCG
GAGTTGGAGCATATCGCACGGATGATGGCGCACCTTATGTGCTACCGATT
GTGAAGGAGTTTGAAAGACAATTCGCCAATGATCCTAGTATCACCCATGA
ATATTTACCACAAGATGGGTTGACAGAGTTTAACAATCTTTCCGCTCGTC
TCATACTCGGCCCTGATAGTGCGGCCCTCAAACAGAATCGCGTCGTCACC
GTGCAGGCTCTTTCAGGAACTGGTGCCCTGCGCATTGGATTTGCATTCAT
CGCTAATTTTATTGGACAGCGTCTTGTGTACATCCCAAACCCTACCTGGT
CAAATCATCGAAACGTTGTTCCACAAGCTGGATTACCCCCAACCGAAAAC
TATCGTTACTTTGACCCCAACACGCGAGGCGTCGACATCGAAGGACTGCT
GGTGGACTTGAGCTCTGCTGTTGAAGGATCTATCGTCGTGTTTCATGGAT
GCGCTCACAACCCTACTGGCGCTGATCCTTCAAGAGCTGAATGGCAACGC
ATTCTTGCAGTTGTAAAATCAAGGAAACTTGTTCCATTCTTTGATAACGC
GTACCAGGGCTTTGCATCTGGGGACTTGAACACAGATGCATGGTCCACTA
GGCTGTTTGTAAACTCTGGAATCGATGTGTTAGTCGCTCAATCATATGCA
AAAAATATGGGAATGTACGGAGAACGGGTTGGGGCACTCAACGTGGTATC
GTCGTCCCCAAAGTCAGTTGCTGCAGTTAGGAGTCAGTTAAAACAGTTGA
TACGAGCCATGTATAGTAGTCCTCCTTTACATGGAGCTCGCATCGCGGCT
GCAATCTTGTCGGATGAAGATGCTTTCCGGAAGTGGGAACTGGAACTGGA
AAAGATGTCAGCTCGCATCCATGCCATGAGATGTCGGCTGAGAGACGCCT
TGAACAGGAATGGCGCACCTGGAAACTGGGATCACATTGTGAACCAGATT
GGCATGTTCAGTTTTACAGGATTGACGAGTCAGCAAGTTGCGTTCATGCG
AGACAGGTACCATATCTACATGACCACTAATGGGCGAATGTCCATGGCCG
GTCTGACAGAAAGTACTGTTGATTACGTCGCTGATGCGATGAAGGACGCC
ATTGAGAGCGTTGTCAAGCAGGACTGA
back to top