Gchil6762.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6762.t1
Unique Name	Gchil6762.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	363

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004416_pilon	contig	tig00004416_pilon:948160..949248 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	43989.cce_2734
Max annot lvl	1117\|Cyanobacteria
Evalue	3.71e-15
EggNOG OGs	2DPNW@1\|root,332TP@2\|Bacteria,1GGXC@1117\|Cyanobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6762	Gchil6762	Gracilaria chilensis NLEC103_M9 male	gene	tig00004416_pilon 948160..949248 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6762.t1.start1	Gchil6762.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004416_pilon 948160..948162 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6762.t1.CDS1	Gchil6762.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004416_pilon 948160..949248 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6762.t1.exon1	Gchil6762.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004416_pilon 948160..949248 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6762.t1.stop1	Gchil6762.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004416_pilon 949246..949248 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6762.t1	Gchil6762.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004416_pilon 948160..949248 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004416_pilon:948160..949248+
coding sequence from alignment at tig00004416_pilon:948160..949248+

mRNA sequence

>Gchil6762.t1 ID=Gchil6762.t1|Name=Gchil6762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=363bp
MPLPSTTRPSTQTLTKLCQAWQRLVQKGIPCHNRRLSLSRVLAIWALTLL
CIHIINLLLRATTPRQGAPPYRTKSSFQADTHFWHHRHLIFCVSPGRSGS
KYLRNVLNVAENIISRHEPEPKMTDTHLQRVILQGMRRETFHQRAQLKLA
AIRQALEATTPNVAYAETTHMFVKTFADVVLEHLADSANISIVILHRPAR
DSIWSQLRLGWFSPAHSGKNVWYYDINDVHQTEKQLSYSTNSSNPIDSLI
GYNADVLQRAIELNAQIKRRQRQGAWKNVRVIETWLKAVSETDDGVKNFL
STLGLKTDLRRLAQLKTLDINARDVKKDKFVTTATIHDVDARIQYMLNKL
PLPRQALQPPPV*

spliced messenger RNA

>Gchil6762.t1 ID=Gchil6762.t1|Name=Gchil6762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004416_pilon:948160..949248+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTCCCATCCACCACGCGCCCTTCCACACAAACGCTGACAAAGCT
GTGCCAAGCCTGGCAGCGCCTCGTTCAGAAAGGCATTCCATGCCACAACC
GTCGCCTATCGCTCTCCCGCGTCCTGGCAATATGGGCCCTCACGCTCCTC
TGCATCCACATCATCAACCTTCTGCTCCGCGCTACAACCCCTCGTCAAGG
CGCCCCGCCCTATAGAACAAAGTCCTCTTTCCAGGCTGACACCCACTTTT
GGCATCACAGGCATCTCATTTTCTGCGTTTCTCCCGGTCGATCCGGATCC
AAATATCTTCGAAACGTGCTCAATGTTGCCGAGAACATCATCTCGCGACA
TGAGCCCGAGCCAAAGATGACTGACACCCATCTACAGCGCGTCATTCTAC
AAGGCATGCGACGCGAAACGTTTCATCAAAGAGCCCAATTAAAGCTCGCT
GCCATTCGCCAGGCCTTGGAGGCCACCACCCCCAACGTTGCATACGCCGA
AACCACTCACATGTTTGTCAAGACCTTTGCAGACGTTGTTTTGGAGCATT
TGGCCGATAGCGCCAACATTTCCATCGTCATCTTACACAGACCCGCCAGA
GATTCAATCTGGAGTCAGCTTCGTCTGGGCTGGTTTTCGCCCGCTCACTC
GGGCAAGAACGTGTGGTACTACGACATTAACGATGTTCACCAAACAGAAA
AACAACTCTCCTACTCCACAAATTCATCCAACCCCATCGATTCCTTGATC
GGATACAATGCCGACGTTCTGCAAAGAGCCATAGAACTCAACGCACAAAT
TAAACGTCGACAACGTCAGGGAGCATGGAAAAACGTTCGTGTGATTGAAA
CGTGGCTAAAAGCTGTTTCTGAAACTGACGATGGCGTGAAAAACTTTCTG
TCCACCTTGGGACTGAAAACTGATCTGCGAAGACTTGCGCAACTCAAAAC
ATTAGATATCAACGCGAGGGACGTCAAGAAGGACAAGTTCGTCACCACGG
CTACTATTCACGATGTAGACGCGCGCATTCAATACATGCTCAACAAACTG
CCCTTGCCGCGACAAGCCCTACAACCTCCTCCCGTCTAA

protein sequence of Gchil6762.t1

>Gchil6762.t1 ID=Gchil6762.t1|Name=Gchil6762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=363bp
MPLPSTTRPSTQTLTKLCQAWQRLVQKGIPCHNRRLSLSRVLAIWALTLL
CIHIINLLLRATTPRQGAPPYRTKSSFQADTHFWHHRHLIFCVSPGRSGS
KYLRNVLNVAENIISRHEPEPKMTDTHLQRVILQGMRRETFHQRAQLKLA
AIRQALEATTPNVAYAETTHMFVKTFADVVLEHLADSANISIVILHRPAR
DSIWSQLRLGWFSPAHSGKNVWYYDINDVHQTEKQLSYSTNSSNPIDSLI
GYNADVLQRAIELNAQIKRRQRQGAWKNVRVIETWLKAVSETDDGVKNFL
STLGLKTDLRRLAQLKTLDINARDVKKDKFVTTATIHDVDARIQYMLNKL
PLPRQALQPPPV*

mRNA from alignment at tig00004416_pilon:948160..949248+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6762.t1 ID=Gchil6762.t1|Name=Gchil6762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00004416_pilon:948160..949248+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCTCCCATCCACCACGCGCCCTTCCACACAAACGCTGACAAAGCT
GTGCCAAGCCTGGCAGCGCCTCGTTCAGAAAGGCATTCCATGCCACAACC
GTCGCCTATCGCTCTCCCGCGTCCTGGCAATATGGGCCCTCACGCTCCTC
TGCATCCACATCATCAACCTTCTGCTCCGCGCTACAACCCCTCGTCAAGG
CGCCCCGCCCTATAGAACAAAGTCCTCTTTCCAGGCTGACACCCACTTTT
GGCATCACAGGCATCTCATTTTCTGCGTTTCTCCCGGTCGATCCGGATCC
AAATATCTTCGAAACGTGCTCAATGTTGCCGAGAACATCATCTCGCGACA
TGAGCCCGAGCCAAAGATGACTGACACCCATCTACAGCGCGTCATTCTAC
AAGGCATGCGACGCGAAACGTTTCATCAAAGAGCCCAATTAAAGCTCGCT
GCCATTCGCCAGGCCTTGGAGGCCACCACCCCCAACGTTGCATACGCCGA
AACCACTCACATGTTTGTCAAGACCTTTGCAGACGTTGTTTTGGAGCATT
TGGCCGATAGCGCCAACATTTCCATCGTCATCTTACACAGACCCGCCAGA
GATTCAATCTGGAGTCAGCTTCGTCTGGGCTGGTTTTCGCCCGCTCACTC
GGGCAAGAACGTGTGGTACTACGACATTAACGATGTTCACCAAACAGAAA
AACAACTCTCCTACTCCACAAATTCATCCAACCCCATCGATTCCTTGATC
GGATACAATGCCGACGTTCTGCAAAGAGCCATAGAACTCAACGCACAAAT
TAAACGTCGACAACGTCAGGGAGCATGGAAAAACGTTCGTGTGATTGAAA
CGTGGCTAAAAGCTGTTTCTGAAACTGACGATGGCGTGAAAAACTTTCTG
TCCACCTTGGGACTGAAAACTGATCTGCGAAGACTTGCGCAACTCAAAAC
ATTAGATATCAACGCGAGGGACGTCAAGAAGGACAAGTTCGTCACCACGG
CTACTATTCACGATGTAGACGCGCGCATTCAATACATGCTCAACAAACTG
CCCTTGCCGCGACAAGCCCTACAACCTCCTCCCGTCTAA

Coding sequence (CDS) from alignment at tig00004416_pilon:948160..949248+

>Gchil6762.t1 ID=Gchil6762.t1|Name=Gchil6762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1089bp|location=Sequence derived from alignment at tig00004416_pilon:948160..949248+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCTCCCATCCACCACGCGCCCTTCCACACAAACGCTGACAAAGCT
GTGCCAAGCCTGGCAGCGCCTCGTTCAGAAAGGCATTCCATGCCACAACC
GTCGCCTATCGCTCTCCCGCGTCCTGGCAATATGGGCCCTCACGCTCCTC
TGCATCCACATCATCAACCTTCTGCTCCGCGCTACAACCCCTCGTCAAGG
CGCCCCGCCCTATAGAACAAAGTCCTCTTTCCAGGCTGACACCCACTTTT
GGCATCACAGGCATCTCATTTTCTGCGTTTCTCCCGGTCGATCCGGATCC
AAATATCTTCGAAACGTGCTCAATGTTGCCGAGAACATCATCTCGCGACA
TGAGCCCGAGCCAAAGATGACTGACACCCATCTACAGCGCGTCATTCTAC
AAGGCATGCGACGCGAAACGTTTCATCAAAGAGCCCAATTAAAGCTCGCT
GCCATTCGCCAGGCCTTGGAGGCCACCACCCCCAACGTTGCATACGCCGA
AACCACTCACATGTTTGTCAAGACCTTTGCAGACGTTGTTTTGGAGCATT
TGGCCGATAGCGCCAACATTTCCATCGTCATCTTACACAGACCCGCCAGA
GATTCAATCTGGAGTCAGCTTCGTCTGGGCTGGTTTTCGCCCGCTCACTC
GGGCAAGAACGTGTGGTACTACGACATTAACGATGTTCACCAAACAGAAA
AACAACTCTCCTACTCCACAAATTCATCCAACCCCATCGATTCCTTGATC
GGATACAATGCCGACGTTCTGCAAAGAGCCATAGAACTCAACGCACAAAT
TAAACGTCGACAACGTCAGGGAGCATGGAAAAACGTTCGTGTGATTGAAA
CGTGGCTAAAAGCTGTTTCTGAAACTGACGATGGCGTGAAAAACTTTCTG
TCCACCTTGGGACTGAAAACTGATCTGCGAAGACTTGCGCAACTCAAAAC
ATTAGATATCAACGCGAGGGACGTCAAGAAGGACAAGTTCGTCACCACGG
CTACTATTCACGATGTAGACGCGCGCATTCAATACATGCTCAACAAACTG
CCCTTGCCGCGACAAGCCCTACAACCTCCTCCCGTCTAA