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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 65672.G4U1J4 |
| PFAMs | AAA_16,NACHT,WD40 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.52e-08 |
| EggNOG OGs | KOG0272@1|root,KOG0272@2759|Eukaryota |
| Description | U4 snRNA binding |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil6757.t1 ID=Gchil6757.t1|Name=Gchil6757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=806bp MEVAVASGQLLLQVLVKVETIANKWYERRDIKDDNLNAFHRVTRQYKDVF DVLEAPPAFASTDRFTNTRIDQFETCLRQNAEALEAWGKRIEEGSEIDRV KRMKQILDKCEKDATSFYDFLLTHVSPGVHSALGNESHLSNVIKGIARIV RCTGGASVANKIENVRHLQDACDEASVWFRPHECLLLIDDIWWVNGIDME VLNALCTMLNERSRMVFTSRDRRFLGGAGSVIEFNEIEARGKLARRMLMN HGGFGEEDELDQMNEAAFEAILDLCQGLPLALGIAGASVLQNRMRKRAEN KQSAWSDFYEDVVSKRKDFFDLPDASNGRDKLPKIVGLSLQVLERREDGR NYQQIFRALCVIEKHQTVPVHMLRKLWDMEGNSEAEEVVELLDTVSVVQM RQEYGCISIQLHDLILDIAIRQASEKFETQNFFRTLVCNYIPNAERNNAT QSQKSFAKEKRLGIDPVKKYGFWKKLCCVSSTSDEDKIIETERMRLTPCS LFRAWWDSADDGYLYGNLCRLLERAGYAVELMWLLSKPQWIVKRLQMSGI YGVEGDIEYGTCAMRLQGRNDCALGKHLEVLGKAARMSCATVTENPYEAW FQLYGRLGWYAKQCGRTRRFIKELERHAPRPWVKASAGFLQPAGGAGIDL IHTRGEVTAVSWAGEHVVFSVHGAGGVSVARYNPKTGTCMTKEFGSGEMV VVSNHACALFSRDDRRLATGHKDGRIASYDFDANIARILVGHTGVVRCVA FIADGTRLVSGSDDGTVRVWDARSGEAVGQPYVGHTDKVICAAFSADGAR VVSGG* back to topspliced messenger RNA >Gchil6757.t1 ID=Gchil6757.t1|Name=Gchil6757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2418bp|location=Sequence derived from alignment at tig00004416_pilon:916452..919258+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAAGTTGCCGTGGCATCTGGCCAGCTCCTGTTACAAGTGCTCGTCAA GGTTGAAACAATTGCGAACAAGTGGTACGAGCGTCGAGACATTAAGGATG ACAATCTCAATGCCTTTCATCGAGTGACTCGGCAGTACAAAGACGTATTC GATGTACTAGAAGCACCTCCCGCTTTTGCCTCGACTGATCGTTTCACCAA CACAAGAATAGACCAGTTTGAGACATGCTTGCGGCAGAATGCAGAAGCGT TGGAAGCATGGGGAAAAAGAATAGAAGAAGGTAGTGAAATAGACAGGGTG AAGAGAATGAAGCAAATCCTCGACAAATGCGAAAAGGATGCTACGAGCTT TTACGACTTTCTTCTTACTCACGTGTCCCCGGGTGTGCACAGTGCGCTCG GGAACGAGTCGCATTTGTCAAATGTAATCAAAGGAATCGCGAGAATTGTG CGCTGCACGGGAGGTGCGAGTGTAGCAAACAAGATTGAAAACGTGAGACA TCTCCAGGATGCATGTGACGAGGCATCTGTTTGGTTCCGGCCGCATGAAT GTCTCCTGTTAATCGATGACATTTGGTGGGTGAATGGAATCGATATGGAA GTCTTAAATGCTCTATGCACAATGCTTAACGAAAGGAGCAGAATGGTGTT CACCTCGAGAGATAGACGTTTTTTGGGCGGGGCTGGTTCAGTGATTGAGT TTAATGAGATTGAGGCCCGTGGCAAACTGGCACGCCGCATGTTGATGAAC CATGGTGGCTTTGGTGAAGAGGACGAACTTGACCAGATGAATGAAGCCGC GTTTGAAGCTATCCTTGACCTCTGCCAAGGCCTTCCCCTCGCACTTGGGA TAGCTGGTGCATCTGTTCTGCAGAATCGAATGAGAAAGCGTGCCGAAAAT AAGCAAAGCGCTTGGTCTGATTTCTATGAGGACGTAGTGTCGAAGCGGAA GGACTTTTTTGATCTACCCGACGCCTCGAATGGAAGAGACAAGCTGCCAA AGATTGTCGGTCTTTCTCTACAAGTACTAGAAAGACGCGAGGACGGGAGG AACTACCAGCAGATCTTCAGGGCTCTGTGTGTTATTGAAAAGCATCAGAC AGTTCCGGTTCATATGCTCCGAAAGCTGTGGGACATGGAGGGGAACAGTG AAGCCGAAGAAGTTGTCGAACTGTTAGATACTGTGTCGGTAGTTCAAATG CGGCAAGAGTACGGCTGTATATCGATACAGCTTCATGACTTGATCTTGGA TATCGCCATTCGCCAGGCCTCCGAGAAGTTTGAGACTCAAAACTTTTTCC GAACCTTGGTGTGCAACTACATTCCCAACGCAGAGCGGAATAATGCGACA CAGTCTCAGAAGAGTTTTGCAAAAGAGAAGCGTCTGGGAATTGATCCGGT CAAGAAATATGGCTTCTGGAAGAAACTGTGTTGTGTATCGAGTACAAGCG ATGAAGACAAGATTATTGAGACCGAGAGGATGCGCCTCACACCCTGCAGC TTGTTCCGagcgtggtgggactctgcagatgatgggtatttgtatggaaa tctgtgccggcttcttgaacgggcaggatacgctgtggagctgatgtggc tactgtcaaaaccgcaatggatcgtgAAACGGCTGCAGATGAGCGGAATA TACGGCGTGGAAGGCGACATTGAATACGGGACATGCGCGATGCGCTTGCA GGGTCGTAACGACTGTGCCCTGGGGAAGCATCTTGAAGTACTTGGCAAAG CTGCGCGCATGAGCTGCGCAACAGTGACGGAAAACCCATACGAAGCATGG TTTCAGTTATACGGCCGTTTGGGGTGGTATGCGAAGCAATGCGGCAGGAC GCGACGATTCATCAAAGAGTTGGAGCGTCATGCGCCGAGGCCATGGGTGA AAGCATCTGCCGGGTTCTTGCAGCCTGCCGGGGGGGCAGGGATAGATTTG ATACACACCCGTGGCGAAGTTACGGCTGTATCCTGGGCTGGGGAACATGT TGTATTTAGCGTCCACGGAGCTGGAGGAGTCAGTGTGGCGCGGTACAATC CGAAAACTGGGACATGCATGACGAAAGAGTTTGGATCTGGAGAGATGGTT GTAGTTTCGAATCACGCCTGTGCCTTGTTCTCACGAGATGACAGAAGATT GGCCACAGGTCACAAAGACGGGAGAATTGCAAGTTATGACTTTGACGCCA ATATCGCACGAATTCTTGTAGGGCACACTGGCGTCGTGCGGTGTGTCGCA TTCATTGCGGACGGAACTCGATTGGTGTCCGGGTCAGATGACGGGACTGT TCGCGTTTGGGACGCGCGGAGCGGGGAGGCAGTGGGACAGCCTTATGTTG GTCACACTGATAAGGTGATATGTGCGGCGTTCAGTGCTGACGGCGCTCGA GTGGTGTCTGGgggaTAG back to topprotein sequence of Gchil6757.t1 >Gchil6757.t1 ID=Gchil6757.t1|Name=Gchil6757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=806bp
MEVAVASGQLLLQVLVKVETIANKWYERRDIKDDNLNAFHRVTRQYKDVF DVLEAPPAFASTDRFTNTRIDQFETCLRQNAEALEAWGKRIEEGSEIDRV KRMKQILDKCEKDATSFYDFLLTHVSPGVHSALGNESHLSNVIKGIARIV RCTGGASVANKIENVRHLQDACDEASVWFRPHECLLLIDDIWWVNGIDME VLNALCTMLNERSRMVFTSRDRRFLGGAGSVIEFNEIEARGKLARRMLMN HGGFGEEDELDQMNEAAFEAILDLCQGLPLALGIAGASVLQNRMRKRAEN KQSAWSDFYEDVVSKRKDFFDLPDASNGRDKLPKIVGLSLQVLERREDGR NYQQIFRALCVIEKHQTVPVHMLRKLWDMEGNSEAEEVVELLDTVSVVQM RQEYGCISIQLHDLILDIAIRQASEKFETQNFFRTLVCNYIPNAERNNAT QSQKSFAKEKRLGIDPVKKYGFWKKLCCVSSTSDEDKIIETERMRLTPCS LFRAWWDSADDGYLYGNLCRLLERAGYAVELMWLLSKPQWIVKRLQMSGI YGVEGDIEYGTCAMRLQGRNDCALGKHLEVLGKAARMSCATVTENPYEAW FQLYGRLGWYAKQCGRTRRFIKELERHAPRPWVKASAGFLQPAGGAGIDL IHTRGEVTAVSWAGEHVVFSVHGAGGVSVARYNPKTGTCMTKEFGSGEMV VVSNHACALFSRDDRRLATGHKDGRIASYDFDANIARILVGHTGVVRCVA FIADGTRLVSGSDDGTVRVWDARSGEAVGQPYVGHTDKVICAAFSADGAR VVSGG* back to topmRNA from alignment at tig00004416_pilon:916452..919258+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil6757.t1 ID=Gchil6757.t1|Name=Gchil6757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2807bp|location=Sequence derived from alignment at tig00004416_pilon:916452..919258+ (Gracilaria chilensis NLEC103_M9 male) ATGGAAGTTGCCGTGGCATCTGGCCAGCTCCTGTTACAAGTGCTCGTCAA
GGTTGAAACAATTGCGAACAAGTGGTACGAGCGTCGAGACATTAAGGATG
ACAATCTCAATGCCTTTCATCGAGTGACTCGGCAGTACAAAGACGTATTC
GATGTACTAGAAGCACCTCCCGCTTTTGCCTCGACTGATCGTTTCACCAA
CACAAGAATAGACCAGTTTGAGACATGCTTGCGGCAGAATGCAGAAGCGT
TGGAAGCATGGGGAAAAAGAATAGAAGAAGGTAGTGAAATAGACAGGGTG
AAGAGAATGAAGCAAATCCTCGACAAATGCGAAAAGGATGCTACGAGCTT
TTACGACTTTCTTCTTACTCACGTGTCCCCGGGTGTGCACAGTGCGGTAA
ATGTACAGCCCAataagtatgtatcgggaagcaatgttccacaaaatcca
ccgcgattgacgcatgagtactggaacccggatactagcgaagcaaaact
gaaagcagccgtgctggaccggtgtagcgcagggattgtcgccgtcgtgg
cctccgggaagggtggagtgggtaaaacatgcgcccttcgcgggttggct
tttgaaatggacgtcaagagcgcatttcctggtggtacGCTGTACCTTCA
GCTCGGGAACGAGTCGCATTTGTCAAATGTAATCAAAGGAATCGCGAGAA
TTGTGCGCTGCACGGGAGGTGCGAGTGTAGCAAACAAGATTGAAAACGTG
AGACATCTCCAGGATGCATGTGACGAGGCATCTGTTTGGTTCCGGCCGCA
TGAATGTCTCCTGTTAATCGATGACATTTGGTGGGTGAATGGAATCGATA
TGGAAGTCTTAAATGCTCTATGCACAATGCTTAACGAAAGGAGCAGAATG
GTGTTCACCTCGAGAGATAGACGTTTTTTGGGCGGGGCTGGTTCAGTGAT
TGAGTTTAATGAGATTGAGGCCCGTGGCAAACTGGCACGCCGCATGTTGA
TGAACCATGGTGGCTTTGGTGAAGAGGACGAACTTGACCAGATGAATGAA
GCCGCGTTTGAAGCTATCCTTGACCTCTGCCAAGGCCTTCCCCTCGCACT
TGGGATAGCTGGTGCATCTGTTCTGCAGAATCGAATGAGAAAGCGTGCCG
AAAATAAGCAAAGCGCTTGGTCTGATTTCTATGAGGACGTAGTGTCGAAG
CGGAAGGACTTTTTTGATCTACCCGACGCCTCGAATGGAAGAGACAAGCT
GCCAAAGATTGTCGGTCTTTCTCTACAAGTACTAGAAAGACGCGAGGACG
GGAGGAACTACCAGCAGATCTTCAGGGCTCTGTGTGTTATTGAAAAGCAT
CAGACAGTTCCGGTTCATATGCTCCGAAAGCTGTGGGACATGGAGGGGAA
CAGTGAAGCCGAAGAAGTTGTCGAACTGTTAGATACTGTGTCGGTAGTTC
AAATGCGGCAAGAGTACGGCTGTATATCGATACAGCTTCATGACTTGATC
TTGGATATCGCCATTCGCCAGGCCTCCGAGAAGTTTGAGACTCAAAACTT
TTTCCGAACCTTGGTGTGCAACTACATTCCCAACGCAGAGCGGAATAATG
CGACACAGTCTCAGAAGAGTTTTGCAAAAGAGAAGCGTCTGGGAATTGAT
CCGGTCAAGAAATATGGCTTCTGGAAGAAACTGTGTTGTGTATCGAGTAC
AAGCGATGAAGACAAGATTATTGAGACCGAGAGGATGCGCCTCACACCCT
GCAGCTTGTTCCGagcgtggtgggactctgcagatgatgggtatttgtat
ggaaatctgtgccggcttcttgaacgggcaggatacgctgtggagctgat
gtggctactgtcaaaaccgcaatggatcgtgAAACGGCTGCAGATGAGCG
GAATATACGGCGTGGAAGGCGACATTGAATACGGGACATGCGCGATGCGC
TTGCAGGGTCGTAACGACTGTGCCCTGGGGAAGCATCTTGAAGTACTTGG
CAAAGCTGCGCGCATGAGCTGCGCAACAGTGACGGAAAACCCATACGAAG
CATGGTTTCAGTTATACGGCCGTTTGGGGTGGTATGCGAAGCAATGCGGC
AGGACGCGACGATTCATCAAAGAGTTGGAGCGTCATGCGCCGAGGCCATG
GGTGAAAGCATCTGCCGGGTTCTTGCAGCCTGCCGGGGGGGCAGGGATAG
ATTTGATACACACCCGTGGCGAAGTTACGGCTGTATCCTGGGCTGGGGAA
CATGTTGTATTTAGCGTCCACGGAGCTGGAGGAGTCAGTGTGGCGCGGTA
CAATCCGAAAACTGGGACATGCATGACGAAAGAGTTTGGATCTGGAGAGA
TGGTTGTAGTTTCGAATCACGCCTGTGCCTTGTTCTCACGAGATGACAGA
AGATTGGCCACAGGTCACAAAGACGGGAGAATTGCAAGTTATGACTTTGA
CGCCAATATCGCACGAATTCTTGTAGGGCACACTGGCGTCGTGCGGTGTG
TCGCATTCATTGCGGACGGAACTCGATTGGTGTCCGGGTCAGATGACGGG
ACTGTTCGCGTTTGGGACGCGCGGAGCGGGGAGGCAGTGGGACAGCCTTA
TGTTGGTCACACTGATAAGGTGATATGTGCGGCGTTCAGTGCTGACGGCG
CTCGAGTGGTGTCTGGGTCAGGGGACAGGACTGTTCGCATTTGGGACTCG
CGGagcggagaggcggtgggggagccctttgttggccacactggcgcggt
aacgtgtgcggcgttcagtgcggacggcgctcgagttgtgtccgggtcag
gggaTAG back to topCoding sequence (CDS) from alignment at tig00004416_pilon:916452..919258+ >Gchil6757.t1 ID=Gchil6757.t1|Name=Gchil6757.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2418bp|location=Sequence derived from alignment at tig00004416_pilon:916452..919258+ (Gracilaria chilensis NLEC103_M9 male) ATGGAAGTTGCCGTGGCATCTGGCCAGCTCCTGTTACAAGTGCTCGTCAA GGTTGAAACAATTGCGAACAAGTGGTACGAGCGTCGAGACATTAAGGATG ACAATCTCAATGCCTTTCATCGAGTGACTCGGCAGTACAAAGACGTATTC GATGTACTAGAAGCACCTCCCGCTTTTGCCTCGACTGATCGTTTCACCAA CACAAGAATAGACCAGTTTGAGACATGCTTGCGGCAGAATGCAGAAGCGT TGGAAGCATGGGGAAAAAGAATAGAAGAAGGTAGTGAAATAGACAGGGTG AAGAGAATGAAGCAAATCCTCGACAAATGCGAAAAGGATGCTACGAGCTT TTACGACTTTCTTCTTACTCACGTGTCCCCGGGTGTGCACAGTGCGCTCG GGAACGAGTCGCATTTGTCAAATGTAATCAAAGGAATCGCGAGAATTGTG CGCTGCACGGGAGGTGCGAGTGTAGCAAACAAGATTGAAAACGTGAGACA TCTCCAGGATGCATGTGACGAGGCATCTGTTTGGTTCCGGCCGCATGAAT GTCTCCTGTTAATCGATGACATTTGGTGGGTGAATGGAATCGATATGGAA GTCTTAAATGCTCTATGCACAATGCTTAACGAAAGGAGCAGAATGGTGTT CACCTCGAGAGATAGACGTTTTTTGGGCGGGGCTGGTTCAGTGATTGAGT TTAATGAGATTGAGGCCCGTGGCAAACTGGCACGCCGCATGTTGATGAAC CATGGTGGCTTTGGTGAAGAGGACGAACTTGACCAGATGAATGAAGCCGC GTTTGAAGCTATCCTTGACCTCTGCCAAGGCCTTCCCCTCGCACTTGGGA TAGCTGGTGCATCTGTTCTGCAGAATCGAATGAGAAAGCGTGCCGAAAAT AAGCAAAGCGCTTGGTCTGATTTCTATGAGGACGTAGTGTCGAAGCGGAA GGACTTTTTTGATCTACCCGACGCCTCGAATGGAAGAGACAAGCTGCCAA AGATTGTCGGTCTTTCTCTACAAGTACTAGAAAGACGCGAGGACGGGAGG AACTACCAGCAGATCTTCAGGGCTCTGTGTGTTATTGAAAAGCATCAGAC AGTTCCGGTTCATATGCTCCGAAAGCTGTGGGACATGGAGGGGAACAGTG AAGCCGAAGAAGTTGTCGAACTGTTAGATACTGTGTCGGTAGTTCAAATG CGGCAAGAGTACGGCTGTATATCGATACAGCTTCATGACTTGATCTTGGA TATCGCCATTCGCCAGGCCTCCGAGAAGTTTGAGACTCAAAACTTTTTCC GAACCTTGGTGTGCAACTACATTCCCAACGCAGAGCGGAATAATGCGACA CAGTCTCAGAAGAGTTTTGCAAAAGAGAAGCGTCTGGGAATTGATCCGGT CAAGAAATATGGCTTCTGGAAGAAACTGTGTTGTGTATCGAGTACAAGCG ATGAAGACAAGATTATTGAGACCGAGAGGATGCGCCTCACACCCTGCAGC TTGTTCCGagcgtggtgggactctgcagatgatgggtatttgtatggaaa tctgtgccggcttcttgaacgggcaggatacgctgtggagctgatgtggc tactgtcaaaaccgcaatggatcgtgAAACGGCTGCAGATGAGCGGAATA TACGGCGTGGAAGGCGACATTGAATACGGGACATGCGCGATGCGCTTGCA GGGTCGTAACGACTGTGCCCTGGGGAAGCATCTTGAAGTACTTGGCAAAG CTGCGCGCATGAGCTGCGCAACAGTGACGGAAAACCCATACGAAGCATGG TTTCAGTTATACGGCCGTTTGGGGTGGTATGCGAAGCAATGCGGCAGGAC GCGACGATTCATCAAAGAGTTGGAGCGTCATGCGCCGAGGCCATGGGTGA AAGCATCTGCCGGGTTCTTGCAGCCTGCCGGGGGGGCAGGGATAGATTTG ATACACACCCGTGGCGAAGTTACGGCTGTATCCTGGGCTGGGGAACATGT TGTATTTAGCGTCCACGGAGCTGGAGGAGTCAGTGTGGCGCGGTACAATC CGAAAACTGGGACATGCATGACGAAAGAGTTTGGATCTGGAGAGATGGTT GTAGTTTCGAATCACGCCTGTGCCTTGTTCTCACGAGATGACAGAAGATT GGCCACAGGTCACAAAGACGGGAGAATTGCAAGTTATGACTTTGACGCCA ATATCGCACGAATTCTTGTAGGGCACACTGGCGTCGTGCGGTGTGTCGCA TTCATTGCGGACGGAACTCGATTGGTGTCCGGGTCAGATGACGGGACTGT TCGCGTTTGGGACGCGCGGAGCGGGGAGGCAGTGGGACAGCCTTATGTTG GTCACACTGATAAGGTGATATGTGCGGCGTTCAGTGCTGACGGCGCTCGA GTGGTGTCTGGgggaTAG back to top
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