Gchil6754.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6754.t1
Unique NameGchil6754.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:862367..862902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6754Gchil6754Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 862367..862902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6754.t1Gchil6754.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 862367..862902 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6754.t1.stop1Gchil6754.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 862367..862369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6754.t1.CDS1Gchil6754.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 862367..862382 -
Gchil6754.t1.CDS2Gchil6754.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 862481..862682 -
Gchil6754.t1.CDS3Gchil6754.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 862785..862902 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6754.t1.exon1Gchil6754.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 862367..862382 -
Gchil6754.t1.exon2Gchil6754.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 862481..862682 -
Gchil6754.t1.exon3Gchil6754.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 862785..862902 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6754.t1.intron1Gchil6754.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 862383..862480 -
Gchil6754.t1.intron2Gchil6754.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 862683..862784 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6754.t1.start1Gchil6754.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 862900..862902 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6754.t1 ID=Gchil6754.t1|Name=Gchil6754.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=112bp
MEDNKQIAAGGRTSPEEANKAIANLSLRVSELEKGALTCVVGSGDGTDLR
PVLSEALMDLKSLRTVLITSASELDERIQELAATKEENEKLKYQIKHLKR
SLEAEESKNAA*
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spliced messenger RNA

>Gchil6754.t1 ID=Gchil6754.t1|Name=Gchil6754.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00004416_pilon:862367..862902- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACAACAAACAGATAGCGGCTGGGGGTCGAACGAGTCCCGAAGA
AGCGAACAAAGCCATTGCCAACTTGTCTCTCCGCGTTAGTGAACTGGAGA
AAGGAGCGCTGACATGCGTGGTTGGAAGTGGAGACGGAACGGATCTGCGA
CCAGTGCTCTCAGAGGCTCTCATGGACCTCAAGTCACTTCGAACAGTTCT
AATAACGAGCGCGAGCGAACTGGATGAACGTATTCAGGAATTGGCGGCAA
CCAAAGAAGAAAATGAAAAGCTCAAGTACCAGATCAAGCATCTCAAACGT
TCATTAGAGGCTGAAGAGAGCAAGAATGCGGCGTAA
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protein sequence of Gchil6754.t1

>Gchil6754.t1 ID=Gchil6754.t1|Name=Gchil6754.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=112bp
MEDNKQIAAGGRTSPEEANKAIANLSLRVSELEKGALTCVVGSGDGTDLR
PVLSEALMDLKSLRTVLITSASELDERIQELAATKEENEKLKYQIKHLKR
SLEAEESKNAA*
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mRNA from alignment at tig00004416_pilon:862367..862902-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6754.t1 ID=Gchil6754.t1|Name=Gchil6754.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=536bp|location=Sequence derived from alignment at tig00004416_pilon:862367..862902- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGACAACAAACAGATAGCGGCTGGGGGTCGAACGAGTCCCGAAGA
AGCGAACAAAGCCATTGCCAACTTGTCTCTCCGCGTTAGTGAACTGGAGA
AAGGAGCGCTGACATGCGGTATGTTTGATGGATGTTTTGATCTTGTTACT
TGACTATGATAGACAAATATTAACGTCACAGAGGCTATTCGTTTATCTGA
AATGCTTTATACTACGGTAGTGGTTGGAAGTGGAGACGGAACGGATCTGC
GACCAGTGCTCTCAGAGGCTCTCATGGACCTCAAGTCACTTCGAACAGTT
CTAATAACGAGCGCGAGCGAACTGGATGAACGTATTCAGGAATTGGCGGC
AACCAAAGAAGAAAATGAAAAGCTCAAGTACCAGATCAAGCATCTCAAAC
GTTCATTAGAGGCTGAAGAGAGGTAAGTGCAGGACGGGTAGCGAGCGCTG
CGAGCGCCGTGGGGATGACCCAAGTGGAAGTACTGACGTGCGCGCGGGCT
CAACTACTTGTGATGCGCAGCAAGAATGCGGCGTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:862367..862902-

>Gchil6754.t1 ID=Gchil6754.t1|Name=Gchil6754.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=336bp|location=Sequence derived from alignment at tig00004416_pilon:862367..862902- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGACAACAAACAGATAGCGGCTGGGGGTCGAACGAGTCCCGAAGA
AGCGAACAAAGCCATTGCCAACTTGTCTCTCCGCGTTAGTGAACTGGAGA
AAGGAGCGCTGACATGCGTGGTTGGAAGTGGAGACGGAACGGATCTGCGA
CCAGTGCTCTCAGAGGCTCTCATGGACCTCAAGTCACTTCGAACAGTTCT
AATAACGAGCGCGAGCGAACTGGATGAACGTATTCAGGAATTGGCGGCAA
CCAAAGAAGAAAATGAAAAGCTCAAGTACCAGATCAAGCATCTCAAACGT
TCATTAGAGGCTGAAGAGAGCAAGAATGCGGCGTAA
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