Gchil6744.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6744.t1
Unique NameGchil6744.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length262
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:751868..752653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708750.1
PFAMsFDX-ACB,Phe_tRNA-synt_N,tRNA-synt_2d
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01889
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Evalue6.11e-96
EggNOG OGsCOG0016@1|root,KOG2783@2759|Eukaryota
EC6.1.1.20
Descriptionphenylalanyl-tRNA aminoacylation
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6744Gchil6744Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 751868..752653 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6744.t1.start1Gchil6744.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 751868..751870 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6744.t1.CDS1Gchil6744.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 751868..752653 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6744.t1.exon1Gchil6744.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 751868..752653 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6744.t1.stop1Gchil6744.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 752651..752653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6744.t1Gchil6744.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 751868..752653 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=262bp
MTAHDVPLLQQRHTALLLCGDVYRRDTVDRTHYPVFHQIDAARLYPPSTD
RTVIQRDLQTTLTGLARHLFGQHVKLRWVHAYFPFTHPSFELEVFWEGQW
LELLGCGLLHPRVLANANVSPRVDGWAFGLGLERLAMVLFHVPDIRLFWS
QDPRVTAQFSSGTLLDRYKPFSLFPSIEKHISFWIDGHFHQNDLCEIARG
LAADLVENISLVDRFQREERTSVCYRLVFRSMERSLTHSEVNHIFNNIRQ
NVADSLPVTLR*
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spliced messenger RNA

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00004416_pilon:751868..752653+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCTCATGACGTGCCGCTTTTGCAGCAGCGACATACGGCGCTGTT
GCTGTGCGGCGATGTGTATCGGCGGGACACCGTTGATCGAACGCACTACC
CGGTATTTCACCAAATCGATGCTGCGCGGTTGTATCCGCCGTCCACGGAT
CGCACTGTGATTCAACGCGACTTGCAAACCACTCTCACAGGGTTGGCGCG
CCATTTGTTTGGTCAGCATGTCAAACTACGTTGGGTACACGCCTACTTCC
CCTTCACTCACCCGAGCTTCGAGCTGGAGGTCTTCTGGGAAGGCCAGTGG
CTCGAGCTTCTTGGCTGCGGACTGCTGCACCCGCGCGTGTTGGCAAACGC
TAACGTGTCGCCCCGCGTCGATGGCTGGGCGTTTGGTCTAGGGCTCGAGA
GACTGGCCATGGTTCTGTTTCACGTCCCGGACATCCGACTGTTCTGGTCG
CAGGACCCCCGCGTGACGGCCCAGTTTTCGTCCGGTACGCTGCTGGACCG
CTACAAACCGTTCTCGCTGTTTCCGAGCATTGAAAAGCACATTTCGTTTT
GGATTGACGGCCACTTTCATCAAAACGACCTGTGTGAGATTGCGCGCGGC
CTGGCAGCCGACCTTGTGGAGAATATTTCCCTTGTCGACCGCTTTCAACG
CGAAGAGAGGACCAGCGTGTGTTATCGACTCGTGTTCCGAAGCATGGAAC
GAAGCTTGACTCACTCGGAGGTCAATCACATCTTCAACAACATCCGCCAG
AATGTTGCTGACAGCTTGCCAGTGACGCTCAGATAG
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protein sequence of Gchil6744.t1

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=262bp
MTAHDVPLLQQRHTALLLCGDVYRRDTVDRTHYPVFHQIDAARLYPPSTD
RTVIQRDLQTTLTGLARHLFGQHVKLRWVHAYFPFTHPSFELEVFWEGQW
LELLGCGLLHPRVLANANVSPRVDGWAFGLGLERLAMVLFHVPDIRLFWS
QDPRVTAQFSSGTLLDRYKPFSLFPSIEKHISFWIDGHFHQNDLCEIARG
LAADLVENISLVDRFQREERTSVCYRLVFRSMERSLTHSEVNHIFNNIRQ
NVADSLPVTLR*
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mRNA from alignment at tig00004416_pilon:751868..752653+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=786bp|location=Sequence derived from alignment at tig00004416_pilon:751868..752653+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCTCATGACGTGCCGCTTTTGCAGCAGCGACATACGGCGCTGTT
GCTGTGCGGCGATGTGTATCGGCGGGACACCGTTGATCGAACGCACTACC
CGGTATTTCACCAAATCGATGCTGCGCGGTTGTATCCGCCGTCCACGGAT
CGCACTGTGATTCAACGCGACTTGCAAACCACTCTCACAGGGTTGGCGCG
CCATTTGTTTGGTCAGCATGTCAAACTACGTTGGGTACACGCCTACTTCC
CCTTCACTCACCCGAGCTTCGAGCTGGAGGTCTTCTGGGAAGGCCAGTGG
CTCGAGCTTCTTGGCTGCGGACTGCTGCACCCGCGCGTGTTGGCAAACGC
TAACGTGTCGCCCCGCGTCGATGGCTGGGCGTTTGGTCTAGGGCTCGAGA
GACTGGCCATGGTTCTGTTTCACGTCCCGGACATCCGACTGTTCTGGTCG
CAGGACCCCCGCGTGACGGCCCAGTTTTCGTCCGGTACGCTGCTGGACCG
CTACAAACCGTTCTCGCTGTTTCCGAGCATTGAAAAGCACATTTCGTTTT
GGATTGACGGCCACTTTCATCAAAACGACCTGTGTGAGATTGCGCGCGGC
CTGGCAGCCGACCTTGTGGAGAATATTTCCCTTGTCGACCGCTTTCAACG
CGAAGAGAGGACCAGCGTGTGTTATCGACTCGTGTTCCGAAGCATGGAAC
GAAGCTTGACTCACTCGGAGGTCAATCACATCTTCAACAACATCCGCCAG
AATGTTGCTGACAGCTTGCCAGTGACGCTCAGATAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:751868..752653+

>Gchil6744.t1 ID=Gchil6744.t1|Name=Gchil6744.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=786bp|location=Sequence derived from alignment at tig00004416_pilon:751868..752653+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGCTCATGACGTGCCGCTTTTGCAGCAGCGACATACGGCGCTGTT
GCTGTGCGGCGATGTGTATCGGCGGGACACCGTTGATCGAACGCACTACC
CGGTATTTCACCAAATCGATGCTGCGCGGTTGTATCCGCCGTCCACGGAT
CGCACTGTGATTCAACGCGACTTGCAAACCACTCTCACAGGGTTGGCGCG
CCATTTGTTTGGTCAGCATGTCAAACTACGTTGGGTACACGCCTACTTCC
CCTTCACTCACCCGAGCTTCGAGCTGGAGGTCTTCTGGGAAGGCCAGTGG
CTCGAGCTTCTTGGCTGCGGACTGCTGCACCCGCGCGTGTTGGCAAACGC
TAACGTGTCGCCCCGCGTCGATGGCTGGGCGTTTGGTCTAGGGCTCGAGA
GACTGGCCATGGTTCTGTTTCACGTCCCGGACATCCGACTGTTCTGGTCG
CAGGACCCCCGCGTGACGGCCCAGTTTTCGTCCGGTACGCTGCTGGACCG
CTACAAACCGTTCTCGCTGTTTCCGAGCATTGAAAAGCACATTTCGTTTT
GGATTGACGGCCACTTTCATCAAAACGACCTGTGTGAGATTGCGCGCGGC
CTGGCAGCCGACCTTGTGGAGAATATTTCCCTTGTCGACCGCTTTCAACG
CGAAGAGAGGACCAGCGTGTGTTATCGACTCGTGTTCCGAAGCATGGAAC
GAAGCTTGACTCACTCGGAGGTCAATCACATCTTCAACAACATCCGCCAG
AATGTTGCTGACAGCTTGCCAGTGACGCTCAGATAG
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