Gchil6742.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6742.t1
Unique NameGchil6742.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length317
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:711100..712050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD18797
PFAMsS6PP
Max annot lvl2759|Eukaryota
Evalue6.94e-50
EggNOG OGs2C0PH@1|root,2S2N0@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6742Gchil6742Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 711100..712050 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6742.t1.stop1Gchil6742.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 711100..711102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6742.t1.CDS1Gchil6742.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 711100..712050 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6742.t1.exon1Gchil6742.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 711100..712050 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6742.t1.start1Gchil6742.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 712048..712050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6742.t1Gchil6742.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 711100..712050 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6742.t1 ID=Gchil6742.t1|Name=Gchil6742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=317bp
MQATTASVVFSDLDGTLVHYPKHFSSYAQVIDEDDQNQLATVRYRHGGET
RRCAVLTSLTGGKAYLSLRTKQLVCRLRELGVMFVIITGARASTYAARRA
QLPAADFEFFENGGRKLRNGVLDASWSDKFAPQVGRIHDRTSLVPRLATP
DARDGSLWRVHGELVARGWTTDTRDYSTNFRVDVGGSAERTAAALGAALQ
ESGAEGAGLTSSYNLGKADVYPAGSGKANAARGVLRELGESASDAVALFD
DDNDVLLGELCGRAFLPGVTHDSVAKALERHAHWELASRRGVLGTEEVLE
RVIGLREAALQATETR*
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spliced messenger RNA

>Gchil6742.t1 ID=Gchil6742.t1|Name=Gchil6742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00004416_pilon:711100..712050- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCCACCACCGCAAGCGTGGTGTTCTCCGACCTGGACGGCACGCT
AGTGCACTACCCCAAGCACTTTAGCTCGTACGCCCAAGTGATTGACGAGG
ACGACCAAAACCAACTTGCCACCGTGCGCTACCGACATGGCGGCGAAACG
CGACGTTGCGCAGTACTAACGTCGCTCACGGGCGGCAAGGCGTATCTCTC
GCTGCGCACCAAGCAGCTTGTGTGTCGTCTGCGCGAGCTCGGCGTCATGT
TCGTCATAATCACCGGCGCGCGCGCCTCTACGTACGCGGCGCGTCGCGCG
CAACTGCCGGCCGCCGACTTTGAGTTTTTCGAGAACGGCGGGCGTAAACT
GCGCAACGGCGTGCTGGACGCAAGCTGGAGCGACAAATTCGCGCCGCAGG
TGGGGCGCATTCACGACCGCACCAGTCTAGTACCCCGTCTGGCGACGCCC
GACGCGCGCGACGGGTCGCTATGGCGCGTGCACGGTGAGTTGGTGGCGCG
TGGTTGGACAACGGATACGCGTGACTACAGCACCAACTTTCGCGTGGACG
TGGGAGGCAGCGCTGAGAGGACGGCGGCGGCACTGGGCGCGGCGCTGCAG
GAGAGCGGGGCGGAAGGCGCGGGGCTGACGAGCTCGTATAACCTGGGTAA
GGCGGACGTGTATCCCGCGGGGTCGGGCAAGGCGAACGCGGCGCGCGGGG
TGTTGCGCGAGCTTGGGGAGAGCGCAAGTGATGCGGTGGCGCTTTTTGAC
GACGATAACGACGTGCTGTTGGGCGAGTTGTGCGGGCGTGCGTTTCTGCC
GGGCGTGACGCACGACAGCGTGGCAAAGGCGTTGGAGCGACACGCGCACT
GGGAGCTGGCGTCGCGACGCGGCGTGCTGGGGACGGAGGAGGTGTTAGAG
CGCGTGATCGGGCTGCGGGAGGCGGCGCTGCAGGCGACGGAGACGCGCTG
A
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protein sequence of Gchil6742.t1

>Gchil6742.t1 ID=Gchil6742.t1|Name=Gchil6742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=317bp
MQATTASVVFSDLDGTLVHYPKHFSSYAQVIDEDDQNQLATVRYRHGGET
RRCAVLTSLTGGKAYLSLRTKQLVCRLRELGVMFVIITGARASTYAARRA
QLPAADFEFFENGGRKLRNGVLDASWSDKFAPQVGRIHDRTSLVPRLATP
DARDGSLWRVHGELVARGWTTDTRDYSTNFRVDVGGSAERTAAALGAALQ
ESGAEGAGLTSSYNLGKADVYPAGSGKANAARGVLRELGESASDAVALFD
DDNDVLLGELCGRAFLPGVTHDSVAKALERHAHWELASRRGVLGTEEVLE
RVIGLREAALQATETR*
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mRNA from alignment at tig00004416_pilon:711100..712050-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6742.t1 ID=Gchil6742.t1|Name=Gchil6742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=951bp|location=Sequence derived from alignment at tig00004416_pilon:711100..712050- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGCCACCACCGCAAGCGTGGTGTTCTCCGACCTGGACGGCACGCT
AGTGCACTACCCCAAGCACTTTAGCTCGTACGCCCAAGTGATTGACGAGG
ACGACCAAAACCAACTTGCCACCGTGCGCTACCGACATGGCGGCGAAACG
CGACGTTGCGCAGTACTAACGTCGCTCACGGGCGGCAAGGCGTATCTCTC
GCTGCGCACCAAGCAGCTTGTGTGTCGTCTGCGCGAGCTCGGCGTCATGT
TCGTCATAATCACCGGCGCGCGCGCCTCTACGTACGCGGCGCGTCGCGCG
CAACTGCCGGCCGCCGACTTTGAGTTTTTCGAGAACGGCGGGCGTAAACT
GCGCAACGGCGTGCTGGACGCAAGCTGGAGCGACAAATTCGCGCCGCAGG
TGGGGCGCATTCACGACCGCACCAGTCTAGTACCCCGTCTGGCGACGCCC
GACGCGCGCGACGGGTCGCTATGGCGCGTGCACGGTGAGTTGGTGGCGCG
TGGTTGGACAACGGATACGCGTGACTACAGCACCAACTTTCGCGTGGACG
TGGGAGGCAGCGCTGAGAGGACGGCGGCGGCACTGGGCGCGGCGCTGCAG
GAGAGCGGGGCGGAAGGCGCGGGGCTGACGAGCTCGTATAACCTGGGTAA
GGCGGACGTGTATCCCGCGGGGTCGGGCAAGGCGAACGCGGCGCGCGGGG
TGTTGCGCGAGCTTGGGGAGAGCGCAAGTGATGCGGTGGCGCTTTTTGAC
GACGATAACGACGTGCTGTTGGGCGAGTTGTGCGGGCGTGCGTTTCTGCC
GGGCGTGACGCACGACAGCGTGGCAAAGGCGTTGGAGCGACACGCGCACT
GGGAGCTGGCGTCGCGACGCGGCGTGCTGGGGACGGAGGAGGTGTTAGAG
CGCGTGATCGGGCTGCGGGAGGCGGCGCTGCAGGCGACGGAGACGCGCTG
A
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Coding sequence (CDS) from alignment at tig00004416_pilon:711100..712050-

>Gchil6742.t1 ID=Gchil6742.t1|Name=Gchil6742.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=951bp|location=Sequence derived from alignment at tig00004416_pilon:711100..712050- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGCCACCACCGCAAGCGTGGTGTTCTCCGACCTGGACGGCACGCT
AGTGCACTACCCCAAGCACTTTAGCTCGTACGCCCAAGTGATTGACGAGG
ACGACCAAAACCAACTTGCCACCGTGCGCTACCGACATGGCGGCGAAACG
CGACGTTGCGCAGTACTAACGTCGCTCACGGGCGGCAAGGCGTATCTCTC
GCTGCGCACCAAGCAGCTTGTGTGTCGTCTGCGCGAGCTCGGCGTCATGT
TCGTCATAATCACCGGCGCGCGCGCCTCTACGTACGCGGCGCGTCGCGCG
CAACTGCCGGCCGCCGACTTTGAGTTTTTCGAGAACGGCGGGCGTAAACT
GCGCAACGGCGTGCTGGACGCAAGCTGGAGCGACAAATTCGCGCCGCAGG
TGGGGCGCATTCACGACCGCACCAGTCTAGTACCCCGTCTGGCGACGCCC
GACGCGCGCGACGGGTCGCTATGGCGCGTGCACGGTGAGTTGGTGGCGCG
TGGTTGGACAACGGATACGCGTGACTACAGCACCAACTTTCGCGTGGACG
TGGGAGGCAGCGCTGAGAGGACGGCGGCGGCACTGGGCGCGGCGCTGCAG
GAGAGCGGGGCGGAAGGCGCGGGGCTGACGAGCTCGTATAACCTGGGTAA
GGCGGACGTGTATCCCGCGGGGTCGGGCAAGGCGAACGCGGCGCGCGGGG
TGTTGCGCGAGCTTGGGGAGAGCGCAAGTGATGCGGTGGCGCTTTTTGAC
GACGATAACGACGTGCTGTTGGGCGAGTTGTGCGGGCGTGCGTTTCTGCC
GGGCGTGACGCACGACAGCGTGGCAAAGGCGTTGGAGCGACACGCGCACT
GGGAGCTGGCGTCGCGACGCGGCGTGCTGGGGACGGAGGAGGTGTTAGAG
CGCGTGATCGGGCTGCGGGAGGCGGCGCTGCAGGCGACGGAGACGCGCTG
A
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