Gchil6733.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6733.t1
Unique NameGchil6733.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:689625..691070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1415780.JPOG01000001_gene371
PFAMsp450
Max annot lvl135614|Xanthomonadales
Evalue7.15e-09
EggNOG OGsCOG2124@1|root,COG2124@2|Bacteria,1MV75@1224|Proteobacteria,1RR6Y@1236|Gammaproteobacteria,1X5Q6@135614|Xanthomonadales
DescriptionCytochrome P450
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6733Gchil6733Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 689625..691070 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6733.t1.stop1Gchil6733.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 689625..689627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6733.t1.CDS1Gchil6733.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 689625..691070 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6733.t1.exon1Gchil6733.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 689625..691070 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6733.t1.start1Gchil6733.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 691068..691070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6733.t1Gchil6733.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 689625..691070 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6733.t1 ID=Gchil6733.t1|Name=Gchil6733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=482bp
MAAETTGREVRGARGLPLLGETVAFLADVKRFIDTRVAQYGPTFSTNLFR
MSTIFTCSYHTGAAVLLHSSGGEDEHAALDAGAAYAPMLTALYPAPNLIV
AADGADVRGAQLALLDECLRDAKPFATRATRLADELVALYAQRAATTPAG
VCDMALYAAFKPLVAQVMVEAVLGDTPLEQRRRIRTLCTEHFNGVAAVPL
SVSAFGARSARAAGVQAYHELTRLLAAHVARRVRALRERDDQHDDGDSCS
AQVLARLVLTRRVRQQDAVQVLLTLLSPAVAKAVASTATLAVAVVAEERH
QQLQLDVATQLRRGQVQLLDGVLMETLRLYPPLAGAVRCATRDTSVHGLR
VRAGAAVWLSYLHANRDAAAFARPTVFDTTRWTRSACPFAPTVPPPVSDD
ASADDASTPPDIDAPLSFGAGARHCRGRHVAWELLRRIVAAVLLHLDVAG
PAVRDHHMRYMPVLRPRHDALVRVRPRQHPP*
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spliced messenger RNA

>Gchil6733.t1 ID=Gchil6733.t1|Name=Gchil6733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00004416_pilon:689625..691070- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCGGAGACGACGGGGCGCGAGGTGCGCGGCGCGCGCGGGCTGCC
GCTGCTCGGCGAGACGGTGGCGTTCCTCGCCGACGTGAAGCGCTTCATCG
ACACGCGCGTGGCGCAGTACGGCCCGACCTTCAGCACCAATCTGTTCCGC
ATGAGCACCATCTTCACGTGCTCGTACCACACGGGCGCGGCGGTGCTTTT
GCACAGCAGCGGTGGGGAAGACGAACACGCGGCGCTGGACGCGGGCGCGG
CATACGCGCCGATGCTCACGGCGCTGTACCCCGCGCCCAACCTCATTGTG
GCAGCCGACGGCGCGGACGTGCGCGGCGCGCAGCTGGCGCTGTTGGACGA
GTGTCTGCGCGACGCGAAGCCGTTCGCGACGCGCGCCACGCGTCTGGCGG
ACGAGCTGGTGGCCTTGTACGCGCAGCGCGCGGCGACGACGCCCGCCGGA
GTGTGCGACATGGCCTTGTACGCGGCGTTCAAGCCGCTGGTGGCGCAAGT
GATGGTGGAAGCGGTGCTGGGCGACACGCCGCTTGAGCAACGGCGTCGCA
TCCGCACGCTGTGTACGGAGCACTTCAATGGCGTGGCGGCCGTGCCTCTT
AGCGTGAGCGCGTTTGGGGCGCGAAGCGCGCGCGCAGCCGGCGTACAAGC
GTACCACGAGCTCACGCGGTTGTTGGCGGCGCATGTGGCGCGGCGCGTAC
GCGCGCTGCGCGAGCGCGACGATCAACATGACGATGGCGACAGCTGCAGC
GCACAGGTGCTGGCGCGACTGGTGCTGACGCGACGCGTGCGGCAGCAAGA
CGCAGTGCAGGTGCTGCTGACGCTGCTGTCGCCGGCGGTGGCTAAGGCGG
TGGCGAGCACGGCGACGTTGGCGGTGGCGGTGGTGGCGGAGGAACGTCAC
CAACAGCTGCAGCTCGATGTGGCCACGCAGCTGCGACGCGGACAAGTTCA
ACTGCTGGACGGCGTGCTGATGGAGACGCTACGACTGTACCCGCCGCTGG
CCGGCGCCGTGCGCTGCGCCACACGAGACACCTCCGTGCACGGGCTACGC
GTACGCGCCGGCGCCGCCGTATGGCTATCGTACCTTCACGCCAACCGCGA
CGCCGCCGCGTTTGCTCGTCCCACCGTCTTCGACACTACGCGTTGGACGC
GCTCTGCGTGCCCTTTCGCGCCCACCGTCCCTCCGCCCGTGTCCGACGAC
GCGTCCGCCGACGACGCATCCACCCCCCCCGATATCGACGCGCCGCTTAG
CTTCGGCGCCGGCGCGCGCCATTGCCGCGGCCGCCATGTGGCGTGGGAGC
TGCTGCGTCGCATCGTGGCCGCCGTGCTGCTGCATCTCGACGTGGCCGGC
CCCGCCGTGCGCGACCATCACATGCGCTACATGCCCGTGCTGCGCCCGCG
CCACGACGCCCTTGTGCGCGTGCGTCCCCGACAGCACCCCCCATGA
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protein sequence of Gchil6733.t1

>Gchil6733.t1 ID=Gchil6733.t1|Name=Gchil6733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=482bp
MAAETTGREVRGARGLPLLGETVAFLADVKRFIDTRVAQYGPTFSTNLFR
MSTIFTCSYHTGAAVLLHSSGGEDEHAALDAGAAYAPMLTALYPAPNLIV
AADGADVRGAQLALLDECLRDAKPFATRATRLADELVALYAQRAATTPAG
VCDMALYAAFKPLVAQVMVEAVLGDTPLEQRRRIRTLCTEHFNGVAAVPL
SVSAFGARSARAAGVQAYHELTRLLAAHVARRVRALRERDDQHDDGDSCS
AQVLARLVLTRRVRQQDAVQVLLTLLSPAVAKAVASTATLAVAVVAEERH
QQLQLDVATQLRRGQVQLLDGVLMETLRLYPPLAGAVRCATRDTSVHGLR
VRAGAAVWLSYLHANRDAAAFARPTVFDTTRWTRSACPFAPTVPPPVSDD
ASADDASTPPDIDAPLSFGAGARHCRGRHVAWELLRRIVAAVLLHLDVAG
PAVRDHHMRYMPVLRPRHDALVRVRPRQHPP*
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mRNA from alignment at tig00004416_pilon:689625..691070-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6733.t1 ID=Gchil6733.t1|Name=Gchil6733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00004416_pilon:689625..691070- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGGAGACGACGGGGCGCGAGGTGCGCGGCGCGCGCGGGCTGCC
GCTGCTCGGCGAGACGGTGGCGTTCCTCGCCGACGTGAAGCGCTTCATCG
ACACGCGCGTGGCGCAGTACGGCCCGACCTTCAGCACCAATCTGTTCCGC
ATGAGCACCATCTTCACGTGCTCGTACCACACGGGCGCGGCGGTGCTTTT
GCACAGCAGCGGTGGGGAAGACGAACACGCGGCGCTGGACGCGGGCGCGG
CATACGCGCCGATGCTCACGGCGCTGTACCCCGCGCCCAACCTCATTGTG
GCAGCCGACGGCGCGGACGTGCGCGGCGCGCAGCTGGCGCTGTTGGACGA
GTGTCTGCGCGACGCGAAGCCGTTCGCGACGCGCGCCACGCGTCTGGCGG
ACGAGCTGGTGGCCTTGTACGCGCAGCGCGCGGCGACGACGCCCGCCGGA
GTGTGCGACATGGCCTTGTACGCGGCGTTCAAGCCGCTGGTGGCGCAAGT
GATGGTGGAAGCGGTGCTGGGCGACACGCCGCTTGAGCAACGGCGTCGCA
TCCGCACGCTGTGTACGGAGCACTTCAATGGCGTGGCGGCCGTGCCTCTT
AGCGTGAGCGCGTTTGGGGCGCGAAGCGCGCGCGCAGCCGGCGTACAAGC
GTACCACGAGCTCACGCGGTTGTTGGCGGCGCATGTGGCGCGGCGCGTAC
GCGCGCTGCGCGAGCGCGACGATCAACATGACGATGGCGACAGCTGCAGC
GCACAGGTGCTGGCGCGACTGGTGCTGACGCGACGCGTGCGGCAGCAAGA
CGCAGTGCAGGTGCTGCTGACGCTGCTGTCGCCGGCGGTGGCTAAGGCGG
TGGCGAGCACGGCGACGTTGGCGGTGGCGGTGGTGGCGGAGGAACGTCAC
CAACAGCTGCAGCTCGATGTGGCCACGCAGCTGCGACGCGGACAAGTTCA
ACTGCTGGACGGCGTGCTGATGGAGACGCTACGACTGTACCCGCCGCTGG
CCGGCGCCGTGCGCTGCGCCACACGAGACACCTCCGTGCACGGGCTACGC
GTACGCGCCGGCGCCGCCGTATGGCTATCGTACCTTCACGCCAACCGCGA
CGCCGCCGCGTTTGCTCGTCCCACCGTCTTCGACACTACGCGTTGGACGC
GCTCTGCGTGCCCTTTCGCGCCCACCGTCCCTCCGCCCGTGTCCGACGAC
GCGTCCGCCGACGACGCATCCACCCCCCCCGATATCGACGCGCCGCTTAG
CTTCGGCGCCGGCGCGCGCCATTGCCGCGGCCGCCATGTGGCGTGGGAGC
TGCTGCGTCGCATCGTGGCCGCCGTGCTGCTGCATCTCGACGTGGCCGGC
CCCGCCGTGCGCGACCATCACATGCGCTACATGCCCGTGCTGCGCCCGCG
CCACGACGCCCTTGTGCGCGTGCGTCCCCGACAGCACCCCCCATGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:689625..691070-

>Gchil6733.t1 ID=Gchil6733.t1|Name=Gchil6733.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1446bp|location=Sequence derived from alignment at tig00004416_pilon:689625..691070- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGCGGAGACGACGGGGCGCGAGGTGCGCGGCGCGCGCGGGCTGCC
GCTGCTCGGCGAGACGGTGGCGTTCCTCGCCGACGTGAAGCGCTTCATCG
ACACGCGCGTGGCGCAGTACGGCCCGACCTTCAGCACCAATCTGTTCCGC
ATGAGCACCATCTTCACGTGCTCGTACCACACGGGCGCGGCGGTGCTTTT
GCACAGCAGCGGTGGGGAAGACGAACACGCGGCGCTGGACGCGGGCGCGG
CATACGCGCCGATGCTCACGGCGCTGTACCCCGCGCCCAACCTCATTGTG
GCAGCCGACGGCGCGGACGTGCGCGGCGCGCAGCTGGCGCTGTTGGACGA
GTGTCTGCGCGACGCGAAGCCGTTCGCGACGCGCGCCACGCGTCTGGCGG
ACGAGCTGGTGGCCTTGTACGCGCAGCGCGCGGCGACGACGCCCGCCGGA
GTGTGCGACATGGCCTTGTACGCGGCGTTCAAGCCGCTGGTGGCGCAAGT
GATGGTGGAAGCGGTGCTGGGCGACACGCCGCTTGAGCAACGGCGTCGCA
TCCGCACGCTGTGTACGGAGCACTTCAATGGCGTGGCGGCCGTGCCTCTT
AGCGTGAGCGCGTTTGGGGCGCGAAGCGCGCGCGCAGCCGGCGTACAAGC
GTACCACGAGCTCACGCGGTTGTTGGCGGCGCATGTGGCGCGGCGCGTAC
GCGCGCTGCGCGAGCGCGACGATCAACATGACGATGGCGACAGCTGCAGC
GCACAGGTGCTGGCGCGACTGGTGCTGACGCGACGCGTGCGGCAGCAAGA
CGCAGTGCAGGTGCTGCTGACGCTGCTGTCGCCGGCGGTGGCTAAGGCGG
TGGCGAGCACGGCGACGTTGGCGGTGGCGGTGGTGGCGGAGGAACGTCAC
CAACAGCTGCAGCTCGATGTGGCCACGCAGCTGCGACGCGGACAAGTTCA
ACTGCTGGACGGCGTGCTGATGGAGACGCTACGACTGTACCCGCCGCTGG
CCGGCGCCGTGCGCTGCGCCACACGAGACACCTCCGTGCACGGGCTACGC
GTACGCGCCGGCGCCGCCGTATGGCTATCGTACCTTCACGCCAACCGCGA
CGCCGCCGCGTTTGCTCGTCCCACCGTCTTCGACACTACGCGTTGGACGC
GCTCTGCGTGCCCTTTCGCGCCCACCGTCCCTCCGCCCGTGTCCGACGAC
GCGTCCGCCGACGACGCATCCACCCCCCCCGATATCGACGCGCCGCTTAG
CTTCGGCGCCGGCGCGCGCCATTGCCGCGGCCGCCATGTGGCGTGGGAGC
TGCTGCGTCGCATCGTGGCCGCCGTGCTGCTGCATCTCGACGTGGCCGGC
CCCGCCGTGCGCGACCATCACATGCGCTACATGCCCGTGCTGCGCCCGCG
CCACGACGCCCTTGTGCGCGTGCGTCCCCGACAGCACCCCCCATGA
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