Gchil6729.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6729.t1
Unique NameGchil6729.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:644809..645153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72658.Bostr.22252s0364.1.p
PFAMsArm,Arm_3,IBB
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0017038,GO:0030312,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034504,GO:0034613,GO:0042277,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072594
Evalue4.13e-11
EggNOG OGsCOG5064@1|root,KOG0166@2759|Eukaryota,37HJI@33090|Viridiplantae,3GAGW@35493|Streptophyta,3HVM0@3699|Brassicales
DescriptionImportin subunit
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6729Gchil6729Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 644809..645153 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6729.t1.stop1Gchil6729.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 644809..644811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6729.t1.CDS1Gchil6729.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 644809..645153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6729.t1.exon1Gchil6729.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 644809..645153 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6729.t1.start1Gchil6729.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 645151..645153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6729.t1Gchil6729.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 644809..645153 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6729.t1 ID=Gchil6729.t1|Name=Gchil6729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=115bp
MQDLRKGRFEKAINLDEAHRQRKDNLVRIRNAKSKESFMKKHGECMSMCS
TFATSAEVESMSTNDFNVLLALKYTYRLPQMVAGVFSEDPAEVIQAILGF
RRGLSIDKNPSSLR*
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spliced messenger RNA

>Gchil6729.t1 ID=Gchil6729.t1|Name=Gchil6729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00004416_pilon:644809..645153- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGACCTGCGTAAAGGTCGATTCGAGAAAGCTATCAATCTAGATGA
GGCCCACCGCCAAAGGAAAGACAACCTCGTCAGAATCCGCAATGCAAAAA
GTAAGGAAAGTTTCATGAAGAAGCATGGCGAATGCATGAGTATGTGTTCC
ACATTCGCAACGTCGGCTGAGGTGGAATCGATGTCAACCAACGATTTTAA
CGTTCTCCTGGCATTGAAGTACACTTATCGACTTCCTCAGATGGTGGCAG
GCGTGTTTTCAGAAGACCCTGCCGAGGTGATTCAGGCAATCCTTGGGTTC
CGCCGTGGGCTTTCAATTGACAAGAACCCCTCATCGCTGAGGTGA
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protein sequence of Gchil6729.t1

>Gchil6729.t1 ID=Gchil6729.t1|Name=Gchil6729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=115bp
MQDLRKGRFEKAINLDEAHRQRKDNLVRIRNAKSKESFMKKHGECMSMCS
TFATSAEVESMSTNDFNVLLALKYTYRLPQMVAGVFSEDPAEVIQAILGF
RRGLSIDKNPSSLR*
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mRNA from alignment at tig00004416_pilon:644809..645153-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6729.t1 ID=Gchil6729.t1|Name=Gchil6729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00004416_pilon:644809..645153- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGACCTGCGTAAAGGTCGATTCGAGAAAGCTATCAATCTAGATGA
GGCCCACCGCCAAAGGAAAGACAACCTCGTCAGAATCCGCAATGCAAAAA
GTAAGGAAAGTTTCATGAAGAAGCATGGCGAATGCATGAGTATGTGTTCC
ACATTCGCAACGTCGGCTGAGGTGGAATCGATGTCAACCAACGATTTTAA
CGTTCTCCTGGCATTGAAGTACACTTATCGACTTCCTCAGATGGTGGCAG
GCGTGTTTTCAGAAGACCCTGCCGAGGTGATTCAGGCAATCCTTGGGTTC
CGCCGTGGGCTTTCAATTGACAAGAACCCCTCATCGCTGAGGTGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:644809..645153-

>Gchil6729.t1 ID=Gchil6729.t1|Name=Gchil6729.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00004416_pilon:644809..645153- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGGACCTGCGTAAAGGTCGATTCGAGAAAGCTATCAATCTAGATGA
GGCCCACCGCCAAAGGAAAGACAACCTCGTCAGAATCCGCAATGCAAAAA
GTAAGGAAAGTTTCATGAAGAAGCATGGCGAATGCATGAGTATGTGTTCC
ACATTCGCAACGTCGGCTGAGGTGGAATCGATGTCAACCAACGATTTTAA
CGTTCTCCTGGCATTGAAGTACACTTATCGACTTCCTCAGATGGTGGCAG
GCGTGTTTTCAGAAGACCCTGCCGAGGTGATTCAGGCAATCCTTGGGTTC
CGCCGTGGGCTTTCAATTGACAAGAACCCCTCATCGCTGAGGTGA
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