Gchil6727.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6727.t1
Unique NameGchil6727.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:610697..611809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002502588.1
PFAMsRxt3
Max annot lvl3041|Chlorophyta
Evalue2.11e-22
EggNOG OGsKOG4843@1|root,KOG4843@2759|Eukaryota,37KHR@33090|Viridiplantae,34HTV@3041|Chlorophyta
DescriptionHistone deacetylation protein Rxt3
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6727Gchil6727Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 610697..611809 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6727.t1.stop1Gchil6727.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 610697..610699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6727.t1.CDS1Gchil6727.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 610697..611809 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6727.t1.exon1Gchil6727.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 610697..611809 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6727.t1.start1Gchil6727.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 611807..611809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6727.t1Gchil6727.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 610697..611809 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6727.t1 ID=Gchil6727.t1|Name=Gchil6727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=371bp
MKRARPSSARRDSAAVDGAQVMRRHFMEHILPLPSHTRRHHDNRTSRPLK
RTRHHEASPSSRPPSMSLQATPHFIYAPNRFLDVEKLLKARSERIVSVHI
PSDHFTQPSTAVRNRFLWGTDVYTDDSDLVAVLIHTGYVTMHTNPPFEYL
TVKLKLRPHVFRSSPPFQSTERYAMCSRAWGSAYNGARISVLSVQAVDAN
RKYFITPHSPEHSPAFLPGIVLAPRLNVSKGTKSVPRRSATSICFDMLNE
PSQTYSIIDVTSLFDDARNPFNRLKREVLYVENDLHRFEICRVTNRQNLV
RFGRVKDNVFLQEMLAELGVRGKSRCPLCRENLANVQELSWKEIYWDIDG
VSVNGEWYPLTKLSFRKICE*
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spliced messenger RNA

>Gchil6727.t1 ID=Gchil6727.t1|Name=Gchil6727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00004416_pilon:610697..611809- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGCGCTAGACCGTCTTCTGCGCGCAGAGACTCCGCCGCTGTCGA
CGGAGCACAAGTAATGCGCCGGCATTTCATGGAACACATTCTCCCTCTCC
CTTCACACACTAGGCGCCACCACGACAATCGTACTTCTCGTCCTTTAAAA
CGTACGAGACATCATGAAGCTTCTCCCTCCTCGCGTCCTCCATCCATGTC
CTTGCAGGCAACCCCGCATTTCATATACGCCCCAAATCGCTTCCTTGATG
TCGAAAAGCTCCTCAAAGCCCGCAGTGAGCGCATTGTTTCAGTGCACATT
CCATCTGATCATTTCACCCAACCCTCCACTGCTGTTCGCAACCGTTTTCT
GTGGGGGACTGACGTGTATACAGACGACTCGGACCTTGTCGCCGTTCTTA
TCCACACAGGATATGTCACCATGCACACAAATCCACCCTTTGAATACCTC
ACTGTCAAACTCAAGCTGCGGCCGCATGTATTCAGAAGCTCTCCGCCTTT
CCAGTCCACCGAACGATACGCCATGTGTTCCAGAGCTTGGGGATCCGCCT
ACAACGGTGCGCGCATTTCAGTTTTGTCGGTTCAAGCAGTCGACGCCAAC
CGTAAGTACTTCATCACTCCCCATAGTCCAGAGCACTCCCCTGCTTTTTT
ACCGGGTATAGTTCTGGCGCCTCGTCTAAATGTGTCCAAGGGTACCAAGT
CTGTACCTCGAAGATCAGCCACTTCGATTTGCTTTGATATGCTCAACGAA
CCATCCCAGACATACAGCATCATCGATGTTACATCCCTCTTTGACGATGC
ACGCAACCCATTCAATAGACTCAAGCGCGAAGTTTTGTATGTAGAGAATG
ACTTGCATCGATTCGAAATCTGTCGAGTTACAAATCGTCAAAATCTTGTG
CGCTTTGGGCGCGTTAAGGACAACGTATTTCTGCAAGAAATGCTCGCCGA
ATTGGGCGTTCGTGGTAAGTCCCGGTGTCCTCTGTGCAGAGAGAATTTGG
CAAATGTTCAAGAGCTATCTTGGAAAGAGATTTACTGGGATATTGACGGA
GTATCTGTCAACGGCGAGTGGTATCCACTCACCAAGCTATCATTTCGGAA
GATTTGTGAGTGA
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protein sequence of Gchil6727.t1

>Gchil6727.t1 ID=Gchil6727.t1|Name=Gchil6727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=371bp
MKRARPSSARRDSAAVDGAQVMRRHFMEHILPLPSHTRRHHDNRTSRPLK
RTRHHEASPSSRPPSMSLQATPHFIYAPNRFLDVEKLLKARSERIVSVHI
PSDHFTQPSTAVRNRFLWGTDVYTDDSDLVAVLIHTGYVTMHTNPPFEYL
TVKLKLRPHVFRSSPPFQSTERYAMCSRAWGSAYNGARISVLSVQAVDAN
RKYFITPHSPEHSPAFLPGIVLAPRLNVSKGTKSVPRRSATSICFDMLNE
PSQTYSIIDVTSLFDDARNPFNRLKREVLYVENDLHRFEICRVTNRQNLV
RFGRVKDNVFLQEMLAELGVRGKSRCPLCRENLANVQELSWKEIYWDIDG
VSVNGEWYPLTKLSFRKICE*
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mRNA from alignment at tig00004416_pilon:610697..611809-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6727.t1 ID=Gchil6727.t1|Name=Gchil6727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00004416_pilon:610697..611809- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACGCGCTAGACCGTCTTCTGCGCGCAGAGACTCCGCCGCTGTCGA
CGGAGCACAAGTAATGCGCCGGCATTTCATGGAACACATTCTCCCTCTCC
CTTCACACACTAGGCGCCACCACGACAATCGTACTTCTCGTCCTTTAAAA
CGTACGAGACATCATGAAGCTTCTCCCTCCTCGCGTCCTCCATCCATGTC
CTTGCAGGCAACCCCGCATTTCATATACGCCCCAAATCGCTTCCTTGATG
TCGAAAAGCTCCTCAAAGCCCGCAGTGAGCGCATTGTTTCAGTGCACATT
CCATCTGATCATTTCACCCAACCCTCCACTGCTGTTCGCAACCGTTTTCT
GTGGGGGACTGACGTGTATACAGACGACTCGGACCTTGTCGCCGTTCTTA
TCCACACAGGATATGTCACCATGCACACAAATCCACCCTTTGAATACCTC
ACTGTCAAACTCAAGCTGCGGCCGCATGTATTCAGAAGCTCTCCGCCTTT
CCAGTCCACCGAACGATACGCCATGTGTTCCAGAGCTTGGGGATCCGCCT
ACAACGGTGCGCGCATTTCAGTTTTGTCGGTTCAAGCAGTCGACGCCAAC
CGTAAGTACTTCATCACTCCCCATAGTCCAGAGCACTCCCCTGCTTTTTT
ACCGGGTATAGTTCTGGCGCCTCGTCTAAATGTGTCCAAGGGTACCAAGT
CTGTACCTCGAAGATCAGCCACTTCGATTTGCTTTGATATGCTCAACGAA
CCATCCCAGACATACAGCATCATCGATGTTACATCCCTCTTTGACGATGC
ACGCAACCCATTCAATAGACTCAAGCGCGAAGTTTTGTATGTAGAGAATG
ACTTGCATCGATTCGAAATCTGTCGAGTTACAAATCGTCAAAATCTTGTG
CGCTTTGGGCGCGTTAAGGACAACGTATTTCTGCAAGAAATGCTCGCCGA
ATTGGGCGTTCGTGGTAAGTCCCGGTGTCCTCTGTGCAGAGAGAATTTGG
CAAATGTTCAAGAGCTATCTTGGAAAGAGATTTACTGGGATATTGACGGA
GTATCTGTCAACGGCGAGTGGTATCCACTCACCAAGCTATCATTTCGGAA
GATTTGTGAGTGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:610697..611809-

>Gchil6727.t1 ID=Gchil6727.t1|Name=Gchil6727.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00004416_pilon:610697..611809- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACGCGCTAGACCGTCTTCTGCGCGCAGAGACTCCGCCGCTGTCGA
CGGAGCACAAGTAATGCGCCGGCATTTCATGGAACACATTCTCCCTCTCC
CTTCACACACTAGGCGCCACCACGACAATCGTACTTCTCGTCCTTTAAAA
CGTACGAGACATCATGAAGCTTCTCCCTCCTCGCGTCCTCCATCCATGTC
CTTGCAGGCAACCCCGCATTTCATATACGCCCCAAATCGCTTCCTTGATG
TCGAAAAGCTCCTCAAAGCCCGCAGTGAGCGCATTGTTTCAGTGCACATT
CCATCTGATCATTTCACCCAACCCTCCACTGCTGTTCGCAACCGTTTTCT
GTGGGGGACTGACGTGTATACAGACGACTCGGACCTTGTCGCCGTTCTTA
TCCACACAGGATATGTCACCATGCACACAAATCCACCCTTTGAATACCTC
ACTGTCAAACTCAAGCTGCGGCCGCATGTATTCAGAAGCTCTCCGCCTTT
CCAGTCCACCGAACGATACGCCATGTGTTCCAGAGCTTGGGGATCCGCCT
ACAACGGTGCGCGCATTTCAGTTTTGTCGGTTCAAGCAGTCGACGCCAAC
CGTAAGTACTTCATCACTCCCCATAGTCCAGAGCACTCCCCTGCTTTTTT
ACCGGGTATAGTTCTGGCGCCTCGTCTAAATGTGTCCAAGGGTACCAAGT
CTGTACCTCGAAGATCAGCCACTTCGATTTGCTTTGATATGCTCAACGAA
CCATCCCAGACATACAGCATCATCGATGTTACATCCCTCTTTGACGATGC
ACGCAACCCATTCAATAGACTCAAGCGCGAAGTTTTGTATGTAGAGAATG
ACTTGCATCGATTCGAAATCTGTCGAGTTACAAATCGTCAAAATCTTGTG
CGCTTTGGGCGCGTTAAGGACAACGTATTTCTGCAAGAAATGCTCGCCGA
ATTGGGCGTTCGTGGTAAGTCCCGGTGTCCTCTGTGCAGAGAGAATTTGG
CAAATGTTCAAGAGCTATCTTGGAAAGAGATTTACTGGGATATTGACGGA
GTATCTGTCAACGGCGAGTGGTATCCACTCACCAAGCTATCATTTCGGAA
GATTTGTGAGTGA
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