Gchil6725.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6725.t1
Unique NameGchil6725.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:605975..607093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004364737.1
Preferred namePAK1IP1
PFAMsWD40
Max annot lvl33154|Opisthokonta
KEGG koko:K14830
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030234,GO:0030684,GO:0030685,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032502,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051493,GO:0060021,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:1901360,GO:1901796,GO:1902531,GO:1990904
Evalue6.69e-51
EggNOG OGsKOG0294@1|root,KOG0294@2759|Eukaryota,38DFG@33154|Opisthokonta
Descriptionribosomal large subunit biogenesis
COG categoryO
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6725Gchil6725Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 605975..607093 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6725.t1.start1Gchil6725.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 605975..605977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6725.t1.CDS1Gchil6725.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 605975..607093 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6725.t1.exon1Gchil6725.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 605975..607093 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6725.t1.stop1Gchil6725.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 607091..607093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6725.t1Gchil6725.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 605975..607093 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6725.t1 ID=Gchil6725.t1|Name=Gchil6725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=373bp
MLHSSVSPPSSRIVLGGYDGSLAGLSLESDETSALTLSLKFAYSPHVSAV
RSLALNSSLLASGGVDETIRIYDLGKAVEVGTLLHHDGTVNSLEFVRDSR
RNVLFSCSDDTSICIWRCSDWTCLKQLRAHNAPVVDMAVHQSARVALSVS
KDRTLCMWNLAKGKVAFSCKTKVAVPTSVRWAPNGEAYSLTSGKQLTLFS
VGGKSTSVLNHDCSVLCDQFIDNNTIATGGEEKVVRIWDIREVKNSAIVL
NHEKRIRSLAVVGGLLISADSGGALKIWDIRMKGKPRIETAIADGHLRLT
CMTASNVSDPNKSEDEEKEKAANETNETGSRPKAKTADKGDGKHMLESSS
KPSETASQRKRKKRRLVKEIQK*
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spliced messenger RNA

>Gchil6725.t1 ID=Gchil6725.t1|Name=Gchil6725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00004416_pilon:605975..607093+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCACTCCTCGGTCTCCCCACCTTCTTCGCGGATCGTCCTGGGAGG
TTATGACGGATCTTTGGCAGGCCTTTCTCTCGAGTCTGACGAGACGAGCG
CCCTTACGCTCTCCTTGAAGTTTGCCTACAGCCCGCATGTAAGTGCTGTT
CGTTCCCTGGCACTCAACTCATCTCTACTGGCCTCAGGAGGTGTAGACGA
AACCATTCGAATATATGATCTTGGAAAAGCAGTTGAGGTCGGTACGCTTC
TTCACCATGATGGTACAGTTAACTCGTTGGAATTTGTCAGGGATTCTCGA
CGAAACGTGCTATTCTCTTGTTCGGACGATACTTCCATATGCATCTGGCG
TTGCTCCGACTGGACGTGTTTAAAGCAGCTTCGCGCGCACAACGCTCCTG
TTGTAGATATGGCTGTGCATCAATCCGCTCGAGTAGCTTTGAGTGTGTCA
AAAGACCGCACTTTGTGCATGTGGAACTTGGCAAAAGGAAAAGTAGCTTT
TTCATGCAAGacaaaagttgctgttcccacttctgtgcgatgggccCCTA
ACGGAGAAGCATATTCTCTCACCAGTGGCAAGCAGCTGACCTTGTTCAGC
GTTGGGGGTAAATCAACTTCTGTTCTCAATCACGATTGTTCTGTGCTGTG
CGACCAGTTCATTGACAACAATACGATTGCAACTGGCGGTGAAGAAAAAG
TAGTGAGAATATGGGACATACGAGAGGTCAAGAACAGTGCCATCGTGTTG
AATCATGAAAAACGCATAAGAAGCTTGGCTGTTGTTGGTGGGTTGCTAAT
CTCCGCGGACTCTGGTGGTGCTTTGAAAATCTGGGATATTAGAATGAAGG
GGAAGCCGCGAATCGAGACAGCTATAGCTGATGGTCACCTGCGCCTCACC
TGCATGACAGCTAGCAACGTATCAGATCCAAACAAGTCGGAAGACGAAGA
GAAAGAAAAAGCGGCAAATGAAACGAATGAAACAGGAAGCAGGCCGAAGG
CTAAGACCGCTGATAAGGGAGATGGGAAGCACATGCTAGAAAGCTCTTCA
AAGCCCTCGGAGACTGCCTCGCAACGAAAACGAAAGAAGCGAAGACTGGT
AAAAGAGATTCAGAAGTAA
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protein sequence of Gchil6725.t1

>Gchil6725.t1 ID=Gchil6725.t1|Name=Gchil6725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=373bp
MLHSSVSPPSSRIVLGGYDGSLAGLSLESDETSALTLSLKFAYSPHVSAV
RSLALNSSLLASGGVDETIRIYDLGKAVEVGTLLHHDGTVNSLEFVRDSR
RNVLFSCSDDTSICIWRCSDWTCLKQLRAHNAPVVDMAVHQSARVALSVS
KDRTLCMWNLAKGKVAFSCKTKVAVPTSVRWAPNGEAYSLTSGKQLTLFS
VGGKSTSVLNHDCSVLCDQFIDNNTIATGGEEKVVRIWDIREVKNSAIVL
NHEKRIRSLAVVGGLLISADSGGALKIWDIRMKGKPRIETAIADGHLRLT
CMTASNVSDPNKSEDEEKEKAANETNETGSRPKAKTADKGDGKHMLESSS
KPSETASQRKRKKRRLVKEIQK*
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mRNA from alignment at tig00004416_pilon:605975..607093+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6725.t1 ID=Gchil6725.t1|Name=Gchil6725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00004416_pilon:605975..607093+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCACTCCTCGGTCTCCCCACCTTCTTCGCGGATCGTCCTGGGAGG
TTATGACGGATCTTTGGCAGGCCTTTCTCTCGAGTCTGACGAGACGAGCG
CCCTTACGCTCTCCTTGAAGTTTGCCTACAGCCCGCATGTAAGTGCTGTT
CGTTCCCTGGCACTCAACTCATCTCTACTGGCCTCAGGAGGTGTAGACGA
AACCATTCGAATATATGATCTTGGAAAAGCAGTTGAGGTCGGTACGCTTC
TTCACCATGATGGTACAGTTAACTCGTTGGAATTTGTCAGGGATTCTCGA
CGAAACGTGCTATTCTCTTGTTCGGACGATACTTCCATATGCATCTGGCG
TTGCTCCGACTGGACGTGTTTAAAGCAGCTTCGCGCGCACAACGCTCCTG
TTGTAGATATGGCTGTGCATCAATCCGCTCGAGTAGCTTTGAGTGTGTCA
AAAGACCGCACTTTGTGCATGTGGAACTTGGCAAAAGGAAAAGTAGCTTT
TTCATGCAAGacaaaagttgctgttcccacttctgtgcgatgggccCCTA
ACGGAGAAGCATATTCTCTCACCAGTGGCAAGCAGCTGACCTTGTTCAGC
GTTGGGGGTAAATCAACTTCTGTTCTCAATCACGATTGTTCTGTGCTGTG
CGACCAGTTCATTGACAACAATACGATTGCAACTGGCGGTGAAGAAAAAG
TAGTGAGAATATGGGACATACGAGAGGTCAAGAACAGTGCCATCGTGTTG
AATCATGAAAAACGCATAAGAAGCTTGGCTGTTGTTGGTGGGTTGCTAAT
CTCCGCGGACTCTGGTGGTGCTTTGAAAATCTGGGATATTAGAATGAAGG
GGAAGCCGCGAATCGAGACAGCTATAGCTGATGGTCACCTGCGCCTCACC
TGCATGACAGCTAGCAACGTATCAGATCCAAACAAGTCGGAAGACGAAGA
GAAAGAAAAAGCGGCAAATGAAACGAATGAAACAGGAAGCAGGCCGAAGG
CTAAGACCGCTGATAAGGGAGATGGGAAGCACATGCTAGAAAGCTCTTCA
AAGCCCTCGGAGACTGCCTCGCAACGAAAACGAAAGAAGCGAAGACTGGT
AAAAGAGATTCAGAAGTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:605975..607093+

>Gchil6725.t1 ID=Gchil6725.t1|Name=Gchil6725.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00004416_pilon:605975..607093+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGCACTCCTCGGTCTCCCCACCTTCTTCGCGGATCGTCCTGGGAGG
TTATGACGGATCTTTGGCAGGCCTTTCTCTCGAGTCTGACGAGACGAGCG
CCCTTACGCTCTCCTTGAAGTTTGCCTACAGCCCGCATGTAAGTGCTGTT
CGTTCCCTGGCACTCAACTCATCTCTACTGGCCTCAGGAGGTGTAGACGA
AACCATTCGAATATATGATCTTGGAAAAGCAGTTGAGGTCGGTACGCTTC
TTCACCATGATGGTACAGTTAACTCGTTGGAATTTGTCAGGGATTCTCGA
CGAAACGTGCTATTCTCTTGTTCGGACGATACTTCCATATGCATCTGGCG
TTGCTCCGACTGGACGTGTTTAAAGCAGCTTCGCGCGCACAACGCTCCTG
TTGTAGATATGGCTGTGCATCAATCCGCTCGAGTAGCTTTGAGTGTGTCA
AAAGACCGCACTTTGTGCATGTGGAACTTGGCAAAAGGAAAAGTAGCTTT
TTCATGCAAGacaaaagttgctgttcccacttctgtgcgatgggccCCTA
ACGGAGAAGCATATTCTCTCACCAGTGGCAAGCAGCTGACCTTGTTCAGC
GTTGGGGGTAAATCAACTTCTGTTCTCAATCACGATTGTTCTGTGCTGTG
CGACCAGTTCATTGACAACAATACGATTGCAACTGGCGGTGAAGAAAAAG
TAGTGAGAATATGGGACATACGAGAGGTCAAGAACAGTGCCATCGTGTTG
AATCATGAAAAACGCATAAGAAGCTTGGCTGTTGTTGGTGGGTTGCTAAT
CTCCGCGGACTCTGGTGGTGCTTTGAAAATCTGGGATATTAGAATGAAGG
GGAAGCCGCGAATCGAGACAGCTATAGCTGATGGTCACCTGCGCCTCACC
TGCATGACAGCTAGCAACGTATCAGATCCAAACAAGTCGGAAGACGAAGA
GAAAGAAAAAGCGGCAAATGAAACGAATGAAACAGGAAGCAGGCCGAAGG
CTAAGACCGCTGATAAGGGAGATGGGAAGCACATGCTAGAAAGCTCTTCA
AAGCCCTCGGAGACTGCCTCGCAACGAAAACGAAAGAAGCGAAGACTGGT
AAAAGAGATTCAGAAGTAA
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