Gchil6723.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6723.t1
Unique NameGchil6723.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:539243..539901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6183.Smp_143780.1
Preferred nameDYNLT1
PFAMsTctex-1
Max annot lvl33208|Metazoa
KEGG koko:K10420
GOsGO:0000003,GO:0000132,GO:0000226,GO:0000278,GO:0000902,GO:0001775,GO:0001917,GO:0001932,GO:0001933,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005868,GO:0005874,GO:0005875,GO:0005881,GO:0006810,GO:0006839,GO:0006886,GO:0006887,GO:0006892,GO:0006893,GO:0006928,GO:0006955,GO:0006996,GO:0007005,GO:0007006,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007399,GO:0007568,GO:0008022,GO:0008088,GO:0008090,GO:0008104,GO:0008150,GO:0008277,GO:0008340,GO:0009653,GO:0009892,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010259,GO:0010563,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0010720,GO:0010721,GO:0010941,GO:0010970,GO:0010975,GO:0010976,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016192,GO:0016358,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019060,GO:0019220,GO:0019222,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0023057,GO:0030010,GO:0030027,GO:0030030,GO:0030141,GO:0030154,GO:0030182,GO:0030286,GO:0030424,GO:0030426,GO:0030427,GO:0030581,GO:0030705,GO:0030742,GO:0031175,GO:0031252,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031399,GO:0031400,GO:0031410,GO:0031681,GO:0031974,GO:0031982,GO:0031983,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033267,GO:0034613,GO:0034774,GO:0035020,GO:0035022,GO:0035795,GO:0036230,GO:0036477,GO:0040001,GO:0042119,GO:0042325,GO:0042326,GO:0042592,GO:0042623,GO:0042802,GO:0042803,GO:0042886,GO:0042995,GO:0043001,GO:0043005,GO:0043025,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043408,GO:0043409,GO:0043900,GO:0043903,GO:0044295,GO:0044297,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044766,GO:0045055,GO:0045184,GO:0045321,GO:0045505,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045666,GO:0045936,GO:0046578,GO:0046579,GO:0046719,GO:0046902,GO:0046903,GO:0046907,GO:0046983,GO:0048193,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050790,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0051056,GO:0051057,GO:0051093,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051293,GO:0051294,GO:0051336,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051701,GO:0051704,GO:0051708,GO:0051959,GO:0051960,GO:0051961,GO:0051962,GO:0060205,GO:0060255,GO:0060284,GO:0060548,GO:0061024,GO:0061564,GO:0061951,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070372,GO:0070373,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072657,GO:0072659,GO:0080090,GO:0090150,GO:0090559,GO:0097458,GO:0097708,GO:0098876,GO:0098930,GO:0099080,GO:0099081,GO:0099111,GO:0099503,GO:0099512,GO:0099513,GO:0101002,GO:0120025,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:0150034,GO:1902494,GO:1902531,GO:1902532,GO:1902533,GO:1902579,GO:1902581,GO:1902583,GO:1902850,GO:1903047,GO:1904813,GO:1905709,GO:1990778,GO:2000026
Evalue4.27e-16
EggNOG OGsKOG4081@1|root,KOG4081@2759|Eukaryota,3A3V7@33154|Opisthokonta,3BRCT@33208|Metazoa,3D86K@33213|Bilateria
Descriptionintracellular protein transport in other organism involved in symbiotic interaction
COG categoryN
BRITEko00000,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6723Gchil6723Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 539243..539901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6723.t1Gchil6723.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 539243..539901 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6723.t1.stop1Gchil6723.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 539243..539245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6723.t1.CDS1Gchil6723.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 539243..539297 -
Gchil6723.t1.CDS2Gchil6723.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 539403..539496 -
Gchil6723.t1.CDS3Gchil6723.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 539637..539901 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6723.t1.exon1Gchil6723.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 539243..539297 -
Gchil6723.t1.exon2Gchil6723.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 539403..539496 -
Gchil6723.t1.exon3Gchil6723.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 539637..539901 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6723.t1.intron1Gchil6723.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 539298..539402 -
Gchil6723.t1.intron2Gchil6723.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 539497..539636 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6723.t1.start1Gchil6723.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 539899..539901 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6723.t1 ID=Gchil6723.t1|Name=Gchil6723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=138bp
MATTNSNAPDSPSASTKAIPRDPTIDNALNASHNTLDEDFIKEIVDKAVD
DVIQDSTYSHDATNVWANKIAELVVRTLVNVDRDNKYIVTSMIVQNLRQG
MRSATSCFWNAQTDNGYSLTREKNGMYVITTVFICKT*
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spliced messenger RNA

>Gchil6723.t1 ID=Gchil6723.t1|Name=Gchil6723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=414bp|location=Sequence derived from alignment at tig00004416_pilon:539243..539901- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACTACAAATTCAAATGCACCTGACTCTCCATCTGCATCGACTAA
GGCCATTCCACGCGATCCCACGATTGACAACGCGCTCAATGCAAGTCACA
ACACTTTGGACGAAGACTTTATCAAAGAGATAGTTGATAAAGCCGTTGAT
GATGTCATCCAGGACTCAACATATTCGCACGATGCCACCAATGTGTGGGC
TAATAAGATCGCCGAACTTGTGGTTCGGACATTGGTTAACGTAGACCGTG
ACAACAAATATATAGTAACAAGTATGATTGTACAAAACCTAAGGCAAGGT
ATGCGGTCAGCCACATCTTGTTTCTGGAACGCACAAACCGACAACGGATA
CTCGTTAACGCGGGAAAAAAATGGCATGTATGTCATTACAACAGTATTCA
TATGCAAAACATGA
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protein sequence of Gchil6723.t1

>Gchil6723.t1 ID=Gchil6723.t1|Name=Gchil6723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=138bp
MATTNSNAPDSPSASTKAIPRDPTIDNALNASHNTLDEDFIKEIVDKAVD
DVIQDSTYSHDATNVWANKIAELVVRTLVNVDRDNKYIVTSMIVQNLRQG
MRSATSCFWNAQTDNGYSLTREKNGMYVITTVFICKT*
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mRNA from alignment at tig00004416_pilon:539243..539901-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6723.t1 ID=Gchil6723.t1|Name=Gchil6723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=659bp|location=Sequence derived from alignment at tig00004416_pilon:539243..539901- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACTACAAATTCAAATGCACCTGACTCTCCATCTGCATCGACTAA
GGCCATTCCACGCGATCCCACGATTGACAACGCGCTCAATGCAAGTCACA
ACACTTTGGACGAAGACTTTATCAAAGAGATAGTTGATAAAGCCGTTGAT
GATGTCATCCAGGACTCAACATATTCGCACGATGCCACCAATGTGTGGGC
TAATAAGATCGCCGAACTTGTGGTTCGGACATTGGTTAACGTAGACCGTG
ACAACAAATATATAGGTAAGTCCTCGTCCTTGTCAATTTTTGTGCGCACA
TCGCTTTCACCGTCATCGTGCTTGCGGTATCGACGCCCGCGTAACACGCT
GAATGTTCTTTCAGAACAACTTACCAGATGGGACGGTTGTGATTGTCAAC
TGCAGTAACAAGTATGATTGTACAAAACCTAAGGCAAGGTATGCGGTCAG
CCACATCTTGTTTCTGGAACGCACAAACCGACAACGGATACTCGTTAACG
TAAGTCAACACCATCCCTACACTTCGAAGGGTCAAACGGTCTAGTCAGCT
GCGTCACATCCTAACTGATATCTTTCAATACGCGGGTGACAACGCTATCA
ACAGGCGGGAAAAAAATGGCATGTATGTCATTACAACAGTATTCATATGC
AAAACATGA
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Coding sequence (CDS) from alignment at tig00004416_pilon:539243..539901-

>Gchil6723.t1 ID=Gchil6723.t1|Name=Gchil6723.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=414bp|location=Sequence derived from alignment at tig00004416_pilon:539243..539901- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCACTACAAATTCAAATGCACCTGACTCTCCATCTGCATCGACTAA
GGCCATTCCACGCGATCCCACGATTGACAACGCGCTCAATGCAAGTCACA
ACACTTTGGACGAAGACTTTATCAAAGAGATAGTTGATAAAGCCGTTGAT
GATGTCATCCAGGACTCAACATATTCGCACGATGCCACCAATGTGTGGGC
TAATAAGATCGCCGAACTTGTGGTTCGGACATTGGTTAACGTAGACCGTG
ACAACAAATATATAGTAACAAGTATGATTGTACAAAACCTAAGGCAAGGT
ATGCGGTCAGCCACATCTTGTTTCTGGAACGCACAAACCGACAACGGATA
CTCGTTAACGCGGGAAAAAAATGGCATGTATGTCATTACAACAGTATTCA
TATGCAAAACATGA
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