Gchil6718.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6718.t1
Unique NameGchil6718.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length437
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:504794..506104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6718Gchil6718Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 504794..506104 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6718.t1.start1Gchil6718.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 504794..504796 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6718.t1.CDS1Gchil6718.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 504794..506104 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6718.t1.exon1Gchil6718.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 504794..506104 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6718.t1.stop1Gchil6718.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 506102..506104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6718.t1Gchil6718.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 504794..506104 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6718.t1 ID=Gchil6718.t1|Name=Gchil6718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=437bp
MPHFRAGECWRTVHETAYLLRASSNTSSATNAEEEQPLFLSSAFEGKELL
RTGHKILEALEKKAAPHGENNFRHFALDLYIGVLVPCLICRYLSRAGKVE
RRTAMVEELAPALFCPGKMNYYKVLLYYFRELECVPPPVREAMLQVDIAT
SNFSGMNSFGNIEQNEALEQVEVLSTTQNARCKSRESLKKSFYTWGKLGK
AYNTLQSSVSTPKAEKEWLRSAYEKCLSKGAFKMFQFLCSSHDRTSWLRS
EHCSLPVLTNFLLSPPLVVIAAQQKKLLTMMQAVWEAMDRVGVRFVPKFR
SKSSQSEKKDASDKKKDALEFFNDRFKQREAQGSSTRKATVEKQKSASSI
LSMWRERSLETAKLAKVIASSAATPEEKGAALLRLDLFHQHPYLVSLYPD
VFLNNTGDGPRPPHKSTFWTTLQDALGHRGTFIQLG*
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spliced messenger RNA

>Gchil6718.t1 ID=Gchil6718.t1|Name=Gchil6718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00004416_pilon:504794..506104+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCATTTTCGTGCTGGCGAATGCTGGCGGACTGTGCATGAAACAGC
CTATTTGCTTCGAGCCTCTTCCAATACATCATCTGCGACGAACGCGGAGG
AAGAGCAACCGTTGTTTCTTTCATCAGCGTTTGAGGGGAAGGAATTGCTT
CGCACTGGCCACAAGATTTTGGAAGCTCTCGAGAAAAAAGCCGCGCCACA
TGGGGAAAACAACTTTCGACACTTCGCTTTAGATTTGTACATAGGTGTTC
TAGTTCCTTGTCTCATTTGTCGCTACTTGTCAAGAGCCGGGAAAGTAGAA
CGGCGTACAGCAATGGTGGAGGAACTGGCTCCTGCCCTTTTTTGCCCCGG
CAAGATGAACTACTACAAGGTCCTTCTCTACTATTTTCGGGAGCTAGAAT
GCGTCCCGCCGCCGGTTCGCGAAGCCATGTTGCAAGTAGACATAGCGACA
TCCAATTTCTCTGGAATGAATTCCTTCGGAAACATCGAGCAAAATGAAGC
CCTAGAGCAGGTAGAGGTGCTCAGCACAACGCAGAATGCAAGGTGCAAGA
GCAGAGAGTCTTTGAAGAAAAGCTTCTACACATGGGGAAAACTCGGGAAG
GCATACAATACTCTTCAAAGTTCCGTGTCAACTCCGAAAGCTGAAAAAGA
ATGGCTGAGGTCTGCCTACGAAAAGTGTCTCTCAAAGGGGGCTTTCAAGA
TGTTTCAGTTTCTCTGCAGCTCTCATGACAGAACTTCATGGTTAAGATCC
GAACACTGCAGCCTTCCAGTGCTTACCAACTTCTTGCTGTCTCCACCGCT
AGTCGTGATCGCAGCGCAGCAAAAGAAGCTTCTCACAATGATGCAAGCAG
TGTGGGAAGCTATGGACAGAGTGGGGGTGCGCTTTGTCCCAAAATTTAGG
TCGAAGTCCTCACAGAGTGAAAAGAAGGACGCCAGCGATAAGAAAAAGGA
TGCTCTAGAATTTTTTAATGATCGATTCAAGCAACGCGAAGCTCAGGGGA
GCTCCACGCGGAAGGCCACTGTTGAAAAGCAGAAGAGCGCGAGTTCAATA
CTGTCGATGTGGCGGGAGCGGTCTCTAGAGACCGCAAAACTGGCAAAGGT
TATAGCATCTTCCGCCGCCACACCAGAGGAAAAGGGGGCCGCACTGTTGA
GATTAGATCTTTTCCACCAGCATCCATACCTCGTGAGCTTGTACCCCGAT
GTGTTTCTGAATAATACCGGTGATGGTCCACGACCCCCTCATAAGTCAAC
CTTCTGGACCACGCTTCAGGATGCTTTGGGACACCGCGGAACGTTTATTC
AATTGGGCTAA
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protein sequence of Gchil6718.t1

>Gchil6718.t1 ID=Gchil6718.t1|Name=Gchil6718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=437bp
MPHFRAGECWRTVHETAYLLRASSNTSSATNAEEEQPLFLSSAFEGKELL
RTGHKILEALEKKAAPHGENNFRHFALDLYIGVLVPCLICRYLSRAGKVE
RRTAMVEELAPALFCPGKMNYYKVLLYYFRELECVPPPVREAMLQVDIAT
SNFSGMNSFGNIEQNEALEQVEVLSTTQNARCKSRESLKKSFYTWGKLGK
AYNTLQSSVSTPKAEKEWLRSAYEKCLSKGAFKMFQFLCSSHDRTSWLRS
EHCSLPVLTNFLLSPPLVVIAAQQKKLLTMMQAVWEAMDRVGVRFVPKFR
SKSSQSEKKDASDKKKDALEFFNDRFKQREAQGSSTRKATVEKQKSASSI
LSMWRERSLETAKLAKVIASSAATPEEKGAALLRLDLFHQHPYLVSLYPD
VFLNNTGDGPRPPHKSTFWTTLQDALGHRGTFIQLG*
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mRNA from alignment at tig00004416_pilon:504794..506104+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6718.t1 ID=Gchil6718.t1|Name=Gchil6718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00004416_pilon:504794..506104+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCATTTTCGTGCTGGCGAATGCTGGCGGACTGTGCATGAAACAGC
CTATTTGCTTCGAGCCTCTTCCAATACATCATCTGCGACGAACGCGGAGG
AAGAGCAACCGTTGTTTCTTTCATCAGCGTTTGAGGGGAAGGAATTGCTT
CGCACTGGCCACAAGATTTTGGAAGCTCTCGAGAAAAAAGCCGCGCCACA
TGGGGAAAACAACTTTCGACACTTCGCTTTAGATTTGTACATAGGTGTTC
TAGTTCCTTGTCTCATTTGTCGCTACTTGTCAAGAGCCGGGAAAGTAGAA
CGGCGTACAGCAATGGTGGAGGAACTGGCTCCTGCCCTTTTTTGCCCCGG
CAAGATGAACTACTACAAGGTCCTTCTCTACTATTTTCGGGAGCTAGAAT
GCGTCCCGCCGCCGGTTCGCGAAGCCATGTTGCAAGTAGACATAGCGACA
TCCAATTTCTCTGGAATGAATTCCTTCGGAAACATCGAGCAAAATGAAGC
CCTAGAGCAGGTAGAGGTGCTCAGCACAACGCAGAATGCAAGGTGCAAGA
GCAGAGAGTCTTTGAAGAAAAGCTTCTACACATGGGGAAAACTCGGGAAG
GCATACAATACTCTTCAAAGTTCCGTGTCAACTCCGAAAGCTGAAAAAGA
ATGGCTGAGGTCTGCCTACGAAAAGTGTCTCTCAAAGGGGGCTTTCAAGA
TGTTTCAGTTTCTCTGCAGCTCTCATGACAGAACTTCATGGTTAAGATCC
GAACACTGCAGCCTTCCAGTGCTTACCAACTTCTTGCTGTCTCCACCGCT
AGTCGTGATCGCAGCGCAGCAAAAGAAGCTTCTCACAATGATGCAAGCAG
TGTGGGAAGCTATGGACAGAGTGGGGGTGCGCTTTGTCCCAAAATTTAGG
TCGAAGTCCTCACAGAGTGAAAAGAAGGACGCCAGCGATAAGAAAAAGGA
TGCTCTAGAATTTTTTAATGATCGATTCAAGCAACGCGAAGCTCAGGGGA
GCTCCACGCGGAAGGCCACTGTTGAAAAGCAGAAGAGCGCGAGTTCAATA
CTGTCGATGTGGCGGGAGCGGTCTCTAGAGACCGCAAAACTGGCAAAGGT
TATAGCATCTTCCGCCGCCACACCAGAGGAAAAGGGGGCCGCACTGTTGA
GATTAGATCTTTTCCACCAGCATCCATACCTCGTGAGCTTGTACCCCGAT
GTGTTTCTGAATAATACCGGTGATGGTCCACGACCCCCTCATAAGTCAAC
CTTCTGGACCACGCTTCAGGATGCTTTGGGACACCGCGGAACGTTTATTC
AATTGGGCTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:504794..506104+

>Gchil6718.t1 ID=Gchil6718.t1|Name=Gchil6718.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00004416_pilon:504794..506104+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCCCATTTTCGTGCTGGCGAATGCTGGCGGACTGTGCATGAAACAGC
CTATTTGCTTCGAGCCTCTTCCAATACATCATCTGCGACGAACGCGGAGG
AAGAGCAACCGTTGTTTCTTTCATCAGCGTTTGAGGGGAAGGAATTGCTT
CGCACTGGCCACAAGATTTTGGAAGCTCTCGAGAAAAAAGCCGCGCCACA
TGGGGAAAACAACTTTCGACACTTCGCTTTAGATTTGTACATAGGTGTTC
TAGTTCCTTGTCTCATTTGTCGCTACTTGTCAAGAGCCGGGAAAGTAGAA
CGGCGTACAGCAATGGTGGAGGAACTGGCTCCTGCCCTTTTTTGCCCCGG
CAAGATGAACTACTACAAGGTCCTTCTCTACTATTTTCGGGAGCTAGAAT
GCGTCCCGCCGCCGGTTCGCGAAGCCATGTTGCAAGTAGACATAGCGACA
TCCAATTTCTCTGGAATGAATTCCTTCGGAAACATCGAGCAAAATGAAGC
CCTAGAGCAGGTAGAGGTGCTCAGCACAACGCAGAATGCAAGGTGCAAGA
GCAGAGAGTCTTTGAAGAAAAGCTTCTACACATGGGGAAAACTCGGGAAG
GCATACAATACTCTTCAAAGTTCCGTGTCAACTCCGAAAGCTGAAAAAGA
ATGGCTGAGGTCTGCCTACGAAAAGTGTCTCTCAAAGGGGGCTTTCAAGA
TGTTTCAGTTTCTCTGCAGCTCTCATGACAGAACTTCATGGTTAAGATCC
GAACACTGCAGCCTTCCAGTGCTTACCAACTTCTTGCTGTCTCCACCGCT
AGTCGTGATCGCAGCGCAGCAAAAGAAGCTTCTCACAATGATGCAAGCAG
TGTGGGAAGCTATGGACAGAGTGGGGGTGCGCTTTGTCCCAAAATTTAGG
TCGAAGTCCTCACAGAGTGAAAAGAAGGACGCCAGCGATAAGAAAAAGGA
TGCTCTAGAATTTTTTAATGATCGATTCAAGCAACGCGAAGCTCAGGGGA
GCTCCACGCGGAAGGCCACTGTTGAAAAGCAGAAGAGCGCGAGTTCAATA
CTGTCGATGTGGCGGGAGCGGTCTCTAGAGACCGCAAAACTGGCAAAGGT
TATAGCATCTTCCGCCGCCACACCAGAGGAAAAGGGGGCCGCACTGTTGA
GATTAGATCTTTTCCACCAGCATCCATACCTCGTGAGCTTGTACCCCGAT
GTGTTTCTGAATAATACCGGTGATGGTCCACGACCCCCTCATAAGTCAAC
CTTCTGGACCACGCTTCAGGATGCTTTGGGACACCGCGGAACGTTTATTC
AATTGGGCTAA
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