Gchil6685.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6685.t1
Unique NameGchil6685.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:212521..214032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT520CT
PFAMsCIA30,NAD_binding_10
Max annot lvl2759|Eukaryota
Evalue2.62e-96
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6685Gchil6685Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 212521..214032 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6685.t1.stop1Gchil6685.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 212521..212523 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6685.t1.CDS1Gchil6685.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 212521..214032 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6685.t1.exon1Gchil6685.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 212521..214032 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6685.t1.start1Gchil6685.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 214030..214032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6685.t1Gchil6685.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 212521..214032 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6685.t1 ID=Gchil6685.t1|Name=Gchil6685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp
MGKLSNLTATEQFSERIARHLRLCKDGAYLVTGASGRTGSRVVRNLLSEG
KRVNALTRDHQRLIDALENLEVNVDEEEHNGRLKVFVADLFNLSPQIFDD
VVCIASCTGTTSRSVSTTERDTSPGTSQRPPFVLESKPENVEYVGIRNLV
HEAQKHFSRTRAGNPSISIIDLSDVTAVCSQWSPVNDGVMGGVSTSSVQS
KNGELVFAGIVSTENNGGFASARMSDLETPINLSGYDGLLMRVKGDGKNY
KMIVRCEQKWDGLCHCLTFETTKDEWIEVRMPFDEFNSVRRAKTVDDAPT
LNPSNIVALQLMLSKFEYDGELNPTFNPGPFELRVSDIRAYVDDPNTDCP
KLVHVGTAASTRTLRKNEFKEQIPIVQLSDKLGRILDWKLAGEDTIRTSD
VPYCVLRSTGLNDTTGAVGIENLVFDQGDFLTGILNRDDLAKLVIEAFSN
PAFTNVTTEVSARNEGQEGSSLKEQLQNLKVDNERERKFAPFPYIPKRKP
VPQ*
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spliced messenger RNA

>Gchil6685.t1 ID=Gchil6685.t1|Name=Gchil6685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00004416_pilon:212521..214032- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGAAAGCTGTCAAACTTGACTGCAACCGAACAGTTTTCGGAACGCAT
AGCTCGTCACCTGCGGCTGTGCAAAGATGGCGCGTATCTTGTGACGGGTG
CAAGTGGTCGCACAGGGAGTCGTGTTGTTCGTAATCTCCTCTCAGAAGGA
AAGAGAGTGAATGCACTAACAAGAGATCATCAACGACTGATTGACGCCTT
GGAAAATCTTGAAGTCAATGTCGACGAAGAAGAGCACAACGGAAGGCTAA
AGGTGTTTGTAGCTGACTTGTTCAATCTTTCGCCTCAAATCTTCGATGAT
GTGGTGTGTATAGCAAGTTGTACTGGTACTACCTCCCGATCAGTGAGTAC
TACAGAGAGAGATACCTCTCCTGGGACGAGCCAAAGGCCTCCTTTCGTTT
TGGAGAGTAAACCTGAAAACGTAGAGTACGTTGGTATTCGAAACTTGGTC
CACGAGGCCCAGAAGCATTTTTCCCGAACGAGAGCAGGAAATCCCTCGAT
CTCCATTATAGACCTTTCAGACGTGACTGCTGTGTGCTCGCAATGGTCCC
CGGTGAATGATGGGGTCATGGGTGGAGTCAGTACAAGTTCAGTACAGTCC
AAGAACGGTGAGCTGGTTTTTGCAGGCATCGTGTCAACTGAGAACAATGG
CGGGTTTGCGTCCGCAAGAATGTCTGACCTTGAAACGCCAATAAATCTCA
GCGGATATGACGGATTGCTGATGCGGGTCAAAGGCGATGGAAAAAACTAT
AAGATGATAGTGAGATGTGAACAAAAATGGGACGGGTTATGCCACTGCCT
AACCTTCGAAACAACCAAGGATGAATGGATAGAGGTCAGAATGCCTTTTG
ATGAGTTCAACTCGGTGCGTCGCGCGAAGACAGTTGACGATGCTCCAACG
CTCAATCCAAGTAACATTGTGGCTCTGCAGCTAATGCTCAGTAAATTTGA
GTACGATGGAGAGCTGAATCCCACGTTCAACCCGGGACCGTTTGAATTGC
GCGTTTCTGACATTCGCGCCTACGTGGACGACCCCAATACCGATTGTCCC
AAACTTGTCCATGTTGGGACGGCGGCCTCGACTAGAACTTTGCGGAAAAA
TGAATTCAAGGAACAGATTCCCATTGTACAGTTAAGTGATAAGCTTGGGC
GGATTCTTGACTGGAAGCTCGCCGGGGAAGATACGATCCGCACCTCCGAT
GTTCCGTACTGCGTTTTGCGATCAACTGGCTTGAATGACACTACTGGCGC
TGTTGGAATCGAAAACTTGGTGTTTGATCAAGGAGATTTTCTGACGGGAA
TTCTCAACAGAGATGACCTGGCAAAGCTTGTTATCGAAGCCTTCTCAAAC
CCGGCATTCACAAACGTTACGACAGAAGTATCCGCGCGAAACGAAGGACA
GGAGGGAAGTTCCCTGAAAGAGCAGTTACAGAACTTAAAAGTAGATAACG
AACGTGAGAGAAAGTTCGCTCCCTTCCCGTACATTCCGAAAAGAAAACCA
GTTCCACAATAG
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protein sequence of Gchil6685.t1

>Gchil6685.t1 ID=Gchil6685.t1|Name=Gchil6685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=504bp
MGKLSNLTATEQFSERIARHLRLCKDGAYLVTGASGRTGSRVVRNLLSEG
KRVNALTRDHQRLIDALENLEVNVDEEEHNGRLKVFVADLFNLSPQIFDD
VVCIASCTGTTSRSVSTTERDTSPGTSQRPPFVLESKPENVEYVGIRNLV
HEAQKHFSRTRAGNPSISIIDLSDVTAVCSQWSPVNDGVMGGVSTSSVQS
KNGELVFAGIVSTENNGGFASARMSDLETPINLSGYDGLLMRVKGDGKNY
KMIVRCEQKWDGLCHCLTFETTKDEWIEVRMPFDEFNSVRRAKTVDDAPT
LNPSNIVALQLMLSKFEYDGELNPTFNPGPFELRVSDIRAYVDDPNTDCP
KLVHVGTAASTRTLRKNEFKEQIPIVQLSDKLGRILDWKLAGEDTIRTSD
VPYCVLRSTGLNDTTGAVGIENLVFDQGDFLTGILNRDDLAKLVIEAFSN
PAFTNVTTEVSARNEGQEGSSLKEQLQNLKVDNERERKFAPFPYIPKRKP
VPQ*
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mRNA from alignment at tig00004416_pilon:212521..214032-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6685.t1 ID=Gchil6685.t1|Name=Gchil6685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00004416_pilon:212521..214032- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAAGCTGTCAAACTTGACTGCAACCGAACAGTTTTCGGAACGCAT
AGCTCGTCACCTGCGGCTGTGCAAAGATGGCGCGTATCTTGTGACGGGTG
CAAGTGGTCGCACAGGGAGTCGTGTTGTTCGTAATCTCCTCTCAGAAGGA
AAGAGAGTGAATGCACTAACAAGAGATCATCAACGACTGATTGACGCCTT
GGAAAATCTTGAAGTCAATGTCGACGAAGAAGAGCACAACGGAAGGCTAA
AGGTGTTTGTAGCTGACTTGTTCAATCTTTCGCCTCAAATCTTCGATGAT
GTGGTGTGTATAGCAAGTTGTACTGGTACTACCTCCCGATCAGTGAGTAC
TACAGAGAGAGATACCTCTCCTGGGACGAGCCAAAGGCCTCCTTTCGTTT
TGGAGAGTAAACCTGAAAACGTAGAGTACGTTGGTATTCGAAACTTGGTC
CACGAGGCCCAGAAGCATTTTTCCCGAACGAGAGCAGGAAATCCCTCGAT
CTCCATTATAGACCTTTCAGACGTGACTGCTGTGTGCTCGCAATGGTCCC
CGGTGAATGATGGGGTCATGGGTGGAGTCAGTACAAGTTCAGTACAGTCC
AAGAACGGTGAGCTGGTTTTTGCAGGCATCGTGTCAACTGAGAACAATGG
CGGGTTTGCGTCCGCAAGAATGTCTGACCTTGAAACGCCAATAAATCTCA
GCGGATATGACGGATTGCTGATGCGGGTCAAAGGCGATGGAAAAAACTAT
AAGATGATAGTGAGATGTGAACAAAAATGGGACGGGTTATGCCACTGCCT
AACCTTCGAAACAACCAAGGATGAATGGATAGAGGTCAGAATGCCTTTTG
ATGAGTTCAACTCGGTGCGTCGCGCGAAGACAGTTGACGATGCTCCAACG
CTCAATCCAAGTAACATTGTGGCTCTGCAGCTAATGCTCAGTAAATTTGA
GTACGATGGAGAGCTGAATCCCACGTTCAACCCGGGACCGTTTGAATTGC
GCGTTTCTGACATTCGCGCCTACGTGGACGACCCCAATACCGATTGTCCC
AAACTTGTCCATGTTGGGACGGCGGCCTCGACTAGAACTTTGCGGAAAAA
TGAATTCAAGGAACAGATTCCCATTGTACAGTTAAGTGATAAGCTTGGGC
GGATTCTTGACTGGAAGCTCGCCGGGGAAGATACGATCCGCACCTCCGAT
GTTCCGTACTGCGTTTTGCGATCAACTGGCTTGAATGACACTACTGGCGC
TGTTGGAATCGAAAACTTGGTGTTTGATCAAGGAGATTTTCTGACGGGAA
TTCTCAACAGAGATGACCTGGCAAAGCTTGTTATCGAAGCCTTCTCAAAC
CCGGCATTCACAAACGTTACGACAGAAGTATCCGCGCGAAACGAAGGACA
GGAGGGAAGTTCCCTGAAAGAGCAGTTACAGAACTTAAAAGTAGATAACG
AACGTGAGAGAAAGTTCGCTCCCTTCCCGTACATTCCGAAAAGAAAACCA
GTTCCACAATAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:212521..214032-

>Gchil6685.t1 ID=Gchil6685.t1|Name=Gchil6685.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00004416_pilon:212521..214032- (Gracilaria chilensis NLEC103_M9 male)
ATGGGAAAGCTGTCAAACTTGACTGCAACCGAACAGTTTTCGGAACGCAT
AGCTCGTCACCTGCGGCTGTGCAAAGATGGCGCGTATCTTGTGACGGGTG
CAAGTGGTCGCACAGGGAGTCGTGTTGTTCGTAATCTCCTCTCAGAAGGA
AAGAGAGTGAATGCACTAACAAGAGATCATCAACGACTGATTGACGCCTT
GGAAAATCTTGAAGTCAATGTCGACGAAGAAGAGCACAACGGAAGGCTAA
AGGTGTTTGTAGCTGACTTGTTCAATCTTTCGCCTCAAATCTTCGATGAT
GTGGTGTGTATAGCAAGTTGTACTGGTACTACCTCCCGATCAGTGAGTAC
TACAGAGAGAGATACCTCTCCTGGGACGAGCCAAAGGCCTCCTTTCGTTT
TGGAGAGTAAACCTGAAAACGTAGAGTACGTTGGTATTCGAAACTTGGTC
CACGAGGCCCAGAAGCATTTTTCCCGAACGAGAGCAGGAAATCCCTCGAT
CTCCATTATAGACCTTTCAGACGTGACTGCTGTGTGCTCGCAATGGTCCC
CGGTGAATGATGGGGTCATGGGTGGAGTCAGTACAAGTTCAGTACAGTCC
AAGAACGGTGAGCTGGTTTTTGCAGGCATCGTGTCAACTGAGAACAATGG
CGGGTTTGCGTCCGCAAGAATGTCTGACCTTGAAACGCCAATAAATCTCA
GCGGATATGACGGATTGCTGATGCGGGTCAAAGGCGATGGAAAAAACTAT
AAGATGATAGTGAGATGTGAACAAAAATGGGACGGGTTATGCCACTGCCT
AACCTTCGAAACAACCAAGGATGAATGGATAGAGGTCAGAATGCCTTTTG
ATGAGTTCAACTCGGTGCGTCGCGCGAAGACAGTTGACGATGCTCCAACG
CTCAATCCAAGTAACATTGTGGCTCTGCAGCTAATGCTCAGTAAATTTGA
GTACGATGGAGAGCTGAATCCCACGTTCAACCCGGGACCGTTTGAATTGC
GCGTTTCTGACATTCGCGCCTACGTGGACGACCCCAATACCGATTGTCCC
AAACTTGTCCATGTTGGGACGGCGGCCTCGACTAGAACTTTGCGGAAAAA
TGAATTCAAGGAACAGATTCCCATTGTACAGTTAAGTGATAAGCTTGGGC
GGATTCTTGACTGGAAGCTCGCCGGGGAAGATACGATCCGCACCTCCGAT
GTTCCGTACTGCGTTTTGCGATCAACTGGCTTGAATGACACTACTGGCGC
TGTTGGAATCGAAAACTTGGTGTTTGATCAAGGAGATTTTCTGACGGGAA
TTCTCAACAGAGATGACCTGGCAAAGCTTGTTATCGAAGCCTTCTCAAAC
CCGGCATTCACAAACGTTACGACAGAAGTATCCGCGCGAAACGAAGGACA
GGAGGGAAGTTCCCTGAAAGAGCAGTTACAGAACTTAAAAGTAGATAACG
AACGTGAGAGAAAGTTCGCTCCCTTCCCGTACATTCCGAAAAGAAAACCA
GTTCCACAATAG
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