Gchil6679.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6679.t1
Unique NameGchil6679.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:159283..159951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705981.1
Preferred nameASF1A
PFAMsASF1_hist_chap
Max annot lvl2759|Eukaryota
KEGG koko:K08506,ko:K10753
KEGG Pathwayko04130,map04130
GOsGO:0000003,GO:0000075,GO:0000122,GO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0000902,GO:0000904,GO:0001085,GO:0001103,GO:0001503,GO:0001649,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007093,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007610,GO:0008134,GO:0008150,GO:0008152,GO:0008361,GO:0008593,GO:0009058,GO:0009059,GO:0009292,GO:0009294,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010026,GO:0010090,GO:0010091,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0010648,GO:0016043,GO:0017053,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030154,GO:0030874,GO:0030875,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031497,GO:0031567,GO:0031935,GO:0031936,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032989,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034723,GO:0034724,GO:0034728,GO:0035059,GO:0040029,GO:0042393,GO:0042692,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044454,GO:0044464,GO:0044703,GO:0044706,GO:0044764,GO:0045746,GO:0045786,GO:0045815,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0048024,GO:0048232,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051704,GO:0051716,GO:0051726,GO:0060255,GO:0060378,GO:0060968,GO:0060969,GO:0061061,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070491,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090066,GO:0090304,GO:0090558,GO:0090626,GO:1901360,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903047,GO:1903311,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:2000112,GO:2000113,GO:2001141,GO:2001251
Evalue1.32e-64
EggNOG OGsCOG5137@1|root,KOG3265@2759|Eukaryota
Descriptionchromatin assembly or disassembly
COG categoryBK
BRITEko00000,ko00001,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6679Gchil6679Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 159283..159951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6679.t1Gchil6679.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 159283..159951 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6679.t1.stop1Gchil6679.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 159283..159285 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6679.t1.CDS1Gchil6679.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 159283..159734 -
Gchil6679.t1.CDS2Gchil6679.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 159843..159951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6679.t1.exon1Gchil6679.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 159283..159734 -
Gchil6679.t1.exon2Gchil6679.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 159843..159951 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6679.t1.intron1Gchil6679.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 159735..159842 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6679.t1.start1Gchil6679.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 159949..159951 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6679.t1 ID=Gchil6679.t1|Name=Gchil6679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=187bp
MAAVDIFDVKVLDNPAPFTNPLQFEITYDVRETLKEDIEWKVIYVGCAED
ESHDQELDAVLLPADNTGRFMFVLQVEPPNPSLIPDSDVLGVTIVLLTCS
YNSAEFIRVGYYVSNQYTDPDLHENPPSKPLINKIQRTVAAHEPRVTKFP
HKFDFCQVKTGTPAEPELSTDGSHFAAEVGRQTNVA*
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spliced messenger RNA

>Gchil6679.t1 ID=Gchil6679.t1|Name=Gchil6679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00004416_pilon:159283..159951- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGTTGACATTTTTGATGTGAAGGTCCTTGACAACCCAGCCCC
ATTTACCAATCCATTGCAGTTCGAAATAACCTATGACGTTCGCGAAACTC
TCAAGGAAGATATAGAATGGAAGGTCATCTACGTGGGATGCGCCGAAGAT
GAAAGCCACGACCAAGAACTGGACGCCGTACTTCTACCGGCCGATAATAC
AGGCCGTTTCATGTTTGTGCTGCAGGTCGAACCTCCAAACCCATCACTAA
TCCCAGATTCAGACGTGCTAGGCGTCACCATCGTGTTGCTCACATGCAGC
TACAACAGCGCTGAGTTCATTCGAGTTGGTTACTATGTCAGCAATCAGTA
CACAGATCCGGACCTCCACGAAAACCCGCCATCAAAGCCTCTCATCAACA
AAATTCAACGAACAGTCGCTGCTCACGAGCCACGAGTCACAAAATTTCCA
CATAAGTTCGATTTTTGTCAAGTCAAGACGGGCACGCCTGCAGAACCGGA
GTTATCTACTGACGGTTCTCACTTTGCCGCTGAAGTTGGTCGCCAAACTA
ACGTTGCATAG
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protein sequence of Gchil6679.t1

>Gchil6679.t1 ID=Gchil6679.t1|Name=Gchil6679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=187bp
MAAVDIFDVKVLDNPAPFTNPLQFEITYDVRETLKEDIEWKVIYVGCAED
ESHDQELDAVLLPADNTGRFMFVLQVEPPNPSLIPDSDVLGVTIVLLTCS
YNSAEFIRVGYYVSNQYTDPDLHENPPSKPLINKIQRTVAAHEPRVTKFP
HKFDFCQVKTGTPAEPELSTDGSHFAAEVGRQTNVA*
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mRNA from alignment at tig00004416_pilon:159283..159951-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6679.t1 ID=Gchil6679.t1|Name=Gchil6679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=669bp|location=Sequence derived from alignment at tig00004416_pilon:159283..159951- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGTTGACATTTTTGATGTGAAGGTCCTTGACAACCCAGCCCC
ATTTACCAATCCATTGCAGTTCGAAATAACCTATGACGTTCGCGAAACTC
TCAAGGAAGGTACGTCCCACGTCACCCTCGGTGGGTAGAGTCTTTCTTTT
CACAACCAATTGAATGCTAACCCACGTTTGGCCTCAATACGTCCCATGTA
CGCTTTTGCTTTTGTAGATATAGAATGGAAGGTCATCTACGTGGGATGCG
CCGAAGATGAAAGCCACGACCAAGAACTGGACGCCGTACTTCTACCGGCC
GATAATACAGGCCGTTTCATGTTTGTGCTGCAGGTCGAACCTCCAAACCC
ATCACTAATCCCAGATTCAGACGTGCTAGGCGTCACCATCGTGTTGCTCA
CATGCAGCTACAACAGCGCTGAGTTCATTCGAGTTGGTTACTATGTCAGC
AATCAGTACACAGATCCGGACCTCCACGAAAACCCGCCATCAAAGCCTCT
CATCAACAAAATTCAACGAACAGTCGCTGCTCACGAGCCACGAGTCACAA
AATTTCCACATAAGTTCGATTTTTGTCAAGTCAAGACGGGCACGCCTGCA
GAACCGGAGTTATCTACTGACGGTTCTCACTTTGCCGCTGAAGTTGGTCG
CCAAACTAACGTTGCATAG
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Coding sequence (CDS) from alignment at tig00004416_pilon:159283..159951-

>Gchil6679.t1 ID=Gchil6679.t1|Name=Gchil6679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00004416_pilon:159283..159951- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGCCGTTGACATTTTTGATGTGAAGGTCCTTGACAACCCAGCCCC
ATTTACCAATCCATTGCAGTTCGAAATAACCTATGACGTTCGCGAAACTC
TCAAGGAAGATATAGAATGGAAGGTCATCTACGTGGGATGCGCCGAAGAT
GAAAGCCACGACCAAGAACTGGACGCCGTACTTCTACCGGCCGATAATAC
AGGCCGTTTCATGTTTGTGCTGCAGGTCGAACCTCCAAACCCATCACTAA
TCCCAGATTCAGACGTGCTAGGCGTCACCATCGTGTTGCTCACATGCAGC
TACAACAGCGCTGAGTTCATTCGAGTTGGTTACTATGTCAGCAATCAGTA
CACAGATCCGGACCTCCACGAAAACCCGCCATCAAAGCCTCTCATCAACA
AAATTCAACGAACAGTCGCTGCTCACGAGCCACGAGTCACAAAATTTCCA
CATAAGTTCGATTTTTGTCAAGTCAAGACGGGCACGCCTGCAGAACCGGA
GTTATCTACTGACGGTTCTCACTTTGCCGCTGAAGTTGGTCGCCAAACTA
ACGTTGCATAG
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