Gchil6677.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6677.t1
Unique NameGchil6677.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004416_piloncontigtig00004416_pilon:155355..157591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog984962.XP_009542919.1
Preferred nameSRP40
PFAMsLisH,SRP40_C
Max annot lvl4751|Fungi
KEGG koko:K11294
KEGG Pathwayko05130,map05130
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006810,GO:0006913,GO:0008150,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046907,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013
Evalue7.63e-14
EggNOG OGsKOG2992@1|root,KOG2992@2759|Eukaryota,38DH8@33154|Opisthokonta,3NUEP@4751|Fungi,3V141@5204|Basidiomycota,229YB@155619|Agaricomycetes,3H5BB@355688|Agaricomycetes incertae sedis
DescriptionSRP40, C-terminal domain
COG categoryY
BRITEko00000,ko00001,ko03009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6677Gchil6677Gracilaria chilensis NLEC103_M9 malegenetig00004416_pilon 155355..157591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6677.t1Gchil6677.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004416_pilon 155355..157591 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6677.t1.stop1Gchil6677.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004416_pilon 155355..155357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6677.t1.CDS1Gchil6677.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 155355..156399 -
Gchil6677.t1.CDS2Gchil6677.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 157144..157382 -
Gchil6677.t1.CDS3Gchil6677.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004416_pilon 157454..157591 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6677.t1.exon1Gchil6677.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 155355..156399 -
Gchil6677.t1.exon2Gchil6677.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 157144..157382 -
Gchil6677.t1.exon3Gchil6677.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004416_pilon 157454..157591 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6677.t1.intron1Gchil6677.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 156400..157143 -
Gchil6677.t1.intron2Gchil6677.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004416_pilon 157383..157453 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6677.t1.start1Gchil6677.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004416_pilon 157589..157591 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6677.t1 ID=Gchil6677.t1|Name=Gchil6677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=474bp
MVGQAAKRDRTSPEWDSSSLCSLIHNGFRKAGFIHSAAAFADDCKNDWRK
GEKILQEAYKAFRSSSDSLPKPLDITQLKGESEKKLIDEEIPKLNNNVSE
SSSSDSESSSQGQETKASNQASSSSSEAEKPAERVPKKIKEANSSRPGRT
AVHNGKVGELNSSKDTKSSSSSSSSSSYSSSSSEGSSDPTSKVNSKGAES
SGEDENESDTSSSSSISSDELSADAQKPESLETKQKNSIDSSSPLATSGD
DSSSVGSSSENNDSSESNSSESYEKRASRRQSGVIQDLSRKLENVSPAAP
ANSKQKIGDSLKSSKRESTAVVEKKHKTSDEETKASLLASSGMKEKKCEV
KLGISKVDTPMNSVNGAENNWGSNSGSQQRKRRRSGGDGNGERENRAPFK
RVRVEEVNFKDDRLRDNSFYSKRDTYGSMAHRDLAVTKGKGFRKEKTKKK
RLNHHGGKLSFEVNSYKFSDDSD*
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spliced messenger RNA

>Gchil6677.t1 ID=Gchil6677.t1|Name=Gchil6677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at tig00004416_pilon:155355..157591- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGCCAGGCTGCGAAGAGGGACAGGACATCCCCTGAGTGGGACTC
AAGCTCCTTATGTTCCCTAATACATAATGGCTTCCGAAAGGCAGGTTTTA
TTCACTCGGCTGCCGCCTTTGCCGATGATTGCAAAAATGATTGGAGAAAA
GGAGAAAAGATCCTTCAAGAGGCCTACAAGGCGTTTCGGTCCAGCTCGGA
CTCACTCCCGAAGCCACTCGATATAACACAGCTGAAAGGAGAGTCTGAGA
AAAAGCTCATCGATGAAGAAATTCCCAAACTGAACAACAACGTATCGGAA
TCAAGCTCATCTGATTCGGAAAGCAGTTCTCAAGGCCAAGAAACTAAAGC
ATCAAACCAAGCCTCCTCGTCCTCCTCTGAAGCAGAAAAGCCAGCTGAAA
GAGTTCCAAAGAAGATTAAAGAGGCGAATTCCTCCCGCCCCGGGAGAACC
GCAGTGCATAACGGAAAAGTAGGAGAGCTAAATTCCTCGAAGGATACGAA
GTCGTCAAGCTCATCATCATCTTCTTCTTCTTATTCGTCATCTTCTAGCG
AAGGCTCTAGTGACCCAACTTCAAAGGTCAATTCTAAGGGGGCAGAAAGC
TCCGGTGAAGATGAAAATGAATCTGACACCAGCAGCTCCTCCAGTATATC
CAGTGATGAACTGAGTGCCGATGCGCAAAAACCCGAGTCTCTGGAGACAA
AACAGAAGAATTCAATAGATTCTTCATCTCCGTTGGCGACTTCCGGTGAC
GACAGCAGCAGCGTGGGCAGCAGCAGCGAAAATAATGACAGTAGCGAAAG
CAATAGTAGTGAAAGCTATGAGAAACGTGCATCGAGACGCCAATCAGGTG
TGATTCAAGACCTTTCCCGAAAGCTGGAGAATGTCAGCCCGGCAGCACCT
GCTAATTCCAAACAAAAAATCGGGGATAGCCTCAAATCGAGCAAGCGAGA
AAGTACGGCTGTTGTTGAAAAGAAACACAAAACCTCAGACGAAGAAACGA
AAGCTTCTTTGCTTGCATCAAGTGGGATGAAAGAGAAGAAATGCGAAGTG
AAGCTGGGCATTTCGAAAGTTGATACTCCTATGAACAGTGTAAATGGTGC
TGAAAATAATTGGGGGTCAAACTCGGGGTCTCAACAACGGAAAAGGCGAA
GGAGCGGTGGTGACGGAAATGGGGAACGAGAGAATCGTGCACCTTTCAAG
CGAGTCAGAGTTGAGGAAGTCAACTTTAAAGATGACAGACTGCGAGACAA
TTCATTTTATTCGAAGAGAGACACTTATGGGTCAATGGCACACCGTGATT
TGGCTGTTACGAAGGGAAAAGGCTTCCGCAAAGAGAAAACGAAAAAGAAG
CGCCTCAATCATCACGGAGGAAAGCTAAGTTTTGAAGTTAATTCGTATAA
GTTCTCGGACGACTCCGACTAA
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protein sequence of Gchil6677.t1

>Gchil6677.t1 ID=Gchil6677.t1|Name=Gchil6677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=474bp
MVGQAAKRDRTSPEWDSSSLCSLIHNGFRKAGFIHSAAAFADDCKNDWRK
GEKILQEAYKAFRSSSDSLPKPLDITQLKGESEKKLIDEEIPKLNNNVSE
SSSSDSESSSQGQETKASNQASSSSSEAEKPAERVPKKIKEANSSRPGRT
AVHNGKVGELNSSKDTKSSSSSSSSSSYSSSSSEGSSDPTSKVNSKGAES
SGEDENESDTSSSSSISSDELSADAQKPESLETKQKNSIDSSSPLATSGD
DSSSVGSSSENNDSSESNSSESYEKRASRRQSGVIQDLSRKLENVSPAAP
ANSKQKIGDSLKSSKRESTAVVEKKHKTSDEETKASLLASSGMKEKKCEV
KLGISKVDTPMNSVNGAENNWGSNSGSQQRKRRRSGGDGNGERENRAPFK
RVRVEEVNFKDDRLRDNSFYSKRDTYGSMAHRDLAVTKGKGFRKEKTKKK
RLNHHGGKLSFEVNSYKFSDDSD*
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mRNA from alignment at tig00004416_pilon:155355..157591-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6677.t1 ID=Gchil6677.t1|Name=Gchil6677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2237bp|location=Sequence derived from alignment at tig00004416_pilon:155355..157591- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGGCCAGGCTGCGAAGAGGGACAGGACATCCCCTGAGTGGGACTC
AAGCTCCTTATGTTCCCTAATACATAATGGCTTCCGAAAGGCAGGTTTTA
TTCACTCGGCTGCCGCCTTTGCCGATGATTGCAAAAATGTACGTTCCAAT
GTTCTCCTCGCATTGCATTAAACTCCCTTGACTAACCCGGGATCTTCAAA
TGCATTCAGGATTGGAGAAAAGGAGAAAAGATCCTTCAAGAGGCCTACAA
GGCGTTTCGGTCCAGCTCGGACTCACTCCCGAAGCCACTCGATATAACAC
AGCTGAAAGGAGAGTCTGAGAAAAAGCTCATCGATGAAGAAATTCCCAAA
CTGAACAACAACGTATCGGAATCAAGCTCATCTGATTCGGAAAGCAGTTC
TCAAGGCCAAGAAACTAAAGCATCAAACCAAGCCTCCTCGTCCTCCTCGT
CCTCCTCCGCAACCGCCTCCGAAGAAAATTCGACGTCATCGTCATCAAGC
GATCAACAAATTAGTCCTAAGAAAAAGCCAAATGCAAACTCATTAAGCCC
CGGCTCTCAGTCTGATTCCGGATCATCATCACCCGAAAGCTTCAGTTCTT
CCGAATCACTCAAAAAACCCAAGAAAACGAAGGCTGAGCATACGGATAAA
AGAGTTTCCAAAAAACACCGAAACGCGAAAGAATCCAGCTCGGAACCTGA
GTCTTCATCGGACTCAAGTGGCTCATCATCATCATCATCCAGAGGCAGAT
CATCTGGGAAGGAATCCAACGATGTGCCTAAACATTATGAGGCATCTTCG
TCTTCGTCTTCAAGTTCTGCAGCTGATGAATCGGATCAAATGCCGATTGT
TCGTCCTGGCCTGGGATCGCAAACAGCAGCGGTTCGCAACCTAGCGTCGT
CAGATTCCGAATCCTCTTCGGACAGTGAGCTGTCACCCAAACGCAATTCC
CGAACGAAAACAGATCTGAAACCAGGAAGTGGCAAGTCCGAATCCTCTTC
GGACAGTGAGCTGTCACCCAAACGCAATTCCCGAACGAAAACAGATCTGA
AACCAGGAAGTGGCAAGTCCGAATCAACAAGTGATTCCGATTCAGACACC
GAATCCAGCTCAGACTCTGAGTCAGAGTCTGTCGCTGACTCTGATTCCGA
CTCCGACTCCGACTCCGACTCCGACTCCGACTCTTCCTCTAGTGAAGCAG
AAAAGCCAGCTGAAAGAGTTCCAAAGAAGATTAAAGAGGCGAATTCCTCC
CGCCCCGGGAGAACCGCAGTGCATAACGGAAAAGTAGGAGAGCTAAATTC
CTCGAAGGATACGAAGTCGTCAAGCTCATCATCATCTTCTTCTTCTTATT
CGTCATCTTCTAGCGAAGGCTCTAGTGACCCAACTTCAAAGGTCAATTCT
AAGGGGGCAGAAAGCTCCGGTGAAGATGAAAATGAATCTGACACCAGCAG
CTCCTCCAGTATATCCAGTGATGAACTGAGTGCCGATGCGCAAAAACCCG
AGTCTCTGGAGACAAAACAGAAGAATTCAATAGATTCTTCATCTCCGTTG
GCGACTTCCGGTGACGACAGCAGCAGCGTGGGCAGCAGCAGCGAAAATAA
TGACAGTAGCGAAAGCAATAGTAGTGAAAGCTATGAGAAACGTGCATCGA
GACGCCAATCAGGTGTGATTCAAGACCTTTCCCGAAAGCTGGAGAATGTC
AGCCCGGCAGCACCTGCTAATTCCAAACAAAAAATCGGGGATAGCCTCAA
ATCGAGCAAGCGAGAAAGTACGGCTGTTGTTGAAAAGAAACACAAAACCT
CAGACGAAGAAACGAAAGCTTCTTTGCTTGCATCAAGTGGGATGAAAGAG
AAGAAATGCGAAGTGAAGCTGGGCATTTCGAAAGTTGATACTCCTATGAA
CAGTGTAAATGGTGCTGAAAATAATTGGGGGTCAAACTCGGGGTCTCAAC
AACGGAAAAGGCGAAGGAGCGGTGGTGACGGAAATGGGGAACGAGAGAAT
CGTGCACCTTTCAAGCGAGTCAGAGTTGAGGAAGTCAACTTTAAAGATGA
CAGACTGCGAGACAATTCATTTTATTCGAAGAGAGACACTTATGGGTCAA
TGGCACACCGTGATTTGGCTGTTACGAAGGGAAAAGGCTTCCGCAAAGAG
AAAACGAAAAAGAAGCGCCTCAATCATCACGGAGGAAAGCTAAGTTTTGA
AGTTAATTCGTATAAGTTCTCGGACGACTCCGACTAA
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Coding sequence (CDS) from alignment at tig00004416_pilon:155355..157591-

>Gchil6677.t1 ID=Gchil6677.t1|Name=Gchil6677.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1422bp|location=Sequence derived from alignment at tig00004416_pilon:155355..157591- (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGGCCAGGCTGCGAAGAGGGACAGGACATCCCCTGAGTGGGACTC
AAGCTCCTTATGTTCCCTAATACATAATGGCTTCCGAAAGGCAGGTTTTA
TTCACTCGGCTGCCGCCTTTGCCGATGATTGCAAAAATGATTGGAGAAAA
GGAGAAAAGATCCTTCAAGAGGCCTACAAGGCGTTTCGGTCCAGCTCGGA
CTCACTCCCGAAGCCACTCGATATAACACAGCTGAAAGGAGAGTCTGAGA
AAAAGCTCATCGATGAAGAAATTCCCAAACTGAACAACAACGTATCGGAA
TCAAGCTCATCTGATTCGGAAAGCAGTTCTCAAGGCCAAGAAACTAAAGC
ATCAAACCAAGCCTCCTCGTCCTCCTCTGAAGCAGAAAAGCCAGCTGAAA
GAGTTCCAAAGAAGATTAAAGAGGCGAATTCCTCCCGCCCCGGGAGAACC
GCAGTGCATAACGGAAAAGTAGGAGAGCTAAATTCCTCGAAGGATACGAA
GTCGTCAAGCTCATCATCATCTTCTTCTTCTTATTCGTCATCTTCTAGCG
AAGGCTCTAGTGACCCAACTTCAAAGGTCAATTCTAAGGGGGCAGAAAGC
TCCGGTGAAGATGAAAATGAATCTGACACCAGCAGCTCCTCCAGTATATC
CAGTGATGAACTGAGTGCCGATGCGCAAAAACCCGAGTCTCTGGAGACAA
AACAGAAGAATTCAATAGATTCTTCATCTCCGTTGGCGACTTCCGGTGAC
GACAGCAGCAGCGTGGGCAGCAGCAGCGAAAATAATGACAGTAGCGAAAG
CAATAGTAGTGAAAGCTATGAGAAACGTGCATCGAGACGCCAATCAGGTG
TGATTCAAGACCTTTCCCGAAAGCTGGAGAATGTCAGCCCGGCAGCACCT
GCTAATTCCAAACAAAAAATCGGGGATAGCCTCAAATCGAGCAAGCGAGA
AAGTACGGCTGTTGTTGAAAAGAAACACAAAACCTCAGACGAAGAAACGA
AAGCTTCTTTGCTTGCATCAAGTGGGATGAAAGAGAAGAAATGCGAAGTG
AAGCTGGGCATTTCGAAAGTTGATACTCCTATGAACAGTGTAAATGGTGC
TGAAAATAATTGGGGGTCAAACTCGGGGTCTCAACAACGGAAAAGGCGAA
GGAGCGGTGGTGACGGAAATGGGGAACGAGAGAATCGTGCACCTTTCAAG
CGAGTCAGAGTTGAGGAAGTCAACTTTAAAGATGACAGACTGCGAGACAA
TTCATTTTATTCGAAGAGAGACACTTATGGGTCAATGGCACACCGTGATT
TGGCTGTTACGAAGGGAAAAGGCTTCCGCAAAGAGAAAACGAAAAAGAAG
CGCCTCAATCATCACGGAGGAAAGCTAAGTTTTGAAGTTAATTCGTATAA
GTTCTCGGACGACTCCGACTAA
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