Gchil6669.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6669.t1
Unique Name	Gchil6669.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	464

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004416_pilon	contig	tig00004416_pilon:26162..27553 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36331.EPrPI00000017619
PFAMs	WD40
Max annot lvl	121069\|Pythiales
Evalue	3.72e-51
EggNOG OGs	KOG0299@1\|root,KOG0299@2759\|Eukaryota,1ME0T@121069\|Pythiales
Description	U3 small nucleolar RNA-interacting protein. Source PGD
COG category	A

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6669	Gchil6669	Gracilaria chilensis NLEC103_M9 male	gene	tig00004416_pilon 26162..27553 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6669.t1.start1	Gchil6669.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004416_pilon 26162..26164 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6669.t1.CDS1	Gchil6669.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004416_pilon 26162..27553 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6669.t1.exon1	Gchil6669.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004416_pilon 26162..27553 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6669.t1.stop1	Gchil6669.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004416_pilon 27551..27553 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6669.t1	Gchil6669.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004416_pilon 26162..27553 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004416_pilon:26162..27553+
coding sequence from alignment at tig00004416_pilon:26162..27553+

mRNA sequence

>Gchil6669.t1 ID=Gchil6669.t1|Name=Gchil6669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=464bp
MVGKLTTRKRTRSSTDRTTQAPAFKRKQPEKDEEILSDEIDSDQEVDESS
VESSDESMHENETVEQKRLRLARDYLRHVGVSEDAAASGDEDSENGEIGA
SNKLLREQALRDQTMSFTHIADRFSSSISGLKVNKCKGHVLTPTCVALCS
QDDAIAVSGGKDARLILWDVETGKRRHVFKAIVGEANKKNPAAAKGHIGD
ILAVAITDDGNVAVSGGKDGLIRVWDIRARNLVKTLRGHRGPVSGLTFRS
GSRQLFSASADRTVKIWDINDMAYVETLFGHGGDVNAISSMAMERALSCG
RDGTLRLYKVVEGSQLVFRNANTISLDTVTMISEHRFISGGDDGKVCLWQ
LNKKRPLSSIEHAHGIGLGCDAWISAVSSFRNTDLAVSGAGDGMLRFWKC
EDVPRLQAVGSLHIGPGFVNGIAIGHQNRVLATAVGIEHRLGRWTAIKKA
KNTIQFISLPNFS*

spliced messenger RNA

>Gchil6669.t1 ID=Gchil6669.t1|Name=Gchil6669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00004416_pilon:26162..27553+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGGCAAGCTTACTACACGAAAACGAACACGGTCAAGCACGGATCG
AACGACCCAGGCACCCGCTTTCAAGCGAAAACAACCTGAGAAAGATGAAG
AAATATTGTCTGATGAGATCGATAGCGACCAAGAAGTCGATGAAAGCTCA
GTTGAGTCATCTGATGAATCAATGCATGAGAACGAGACTGTGGAACAAAA
AAGACTTCGCTTAGCTCGTGATTATCTTCGACACGTCGGAGTTTCTGAAG
ATGCTGCAGCTTCCGGTGATGAAGATTCTGAAAATGGCGAAATTGGGGCT
AGTAACAAGTTATTGCGAGAACAGGCGTTGCGAGACCAGACCATGTCTTT
CACACATATTGCTGACAGATTCTCCTCTTCCATCAGCGGTCTTAAGGTTA
ACAAGTGCAAGGGGCATGTTTTAACACCAACGTGCGTTGCGCTATGCTCG
CAGGACGATGCTATAGCCGTGTCCGGCGGAAAAGATGCTAGACTAATTCT
ATGGGATGTTGAGACAGGCAAGCGTCGACATGTTTTCAAGGCAATCGTTG
GCGAAGCGAACAAGAAGAACCCGGCTGCCGCGAAAGGCCACATAGGGGAT
ATCCTGGCTGTGGCAATCACTGATGATGGAAACGTGGCCGTTTCTGGTGG
TAAAGATGGACTGATTCGTGTCTGGGATATTCGTGCTAGGAATTTAGTAA
AGACATTGCGGGGTCATAGAGGACCAGTGTCTGGACTCACCTTTCGGTCA
GGCTCACGGCAACTGTTTTCAGCATCGGCCGATCGCACTGTAAAGATATG
GGATATCAATGATATGGCTTATGTTGAGACTTTATTCGGACATGGAGGTG
ACGTCAACGCCATAAGCTCTATGGCTATGGAGCGTGCATTGTCTTGTGGG
AGGGACGGTACGCTCCGTTTATATAAAGTCGTTGAAGGATCTCAACTTGT
ATTTCGAAACGCAAATACTATTTCGCTGGATACGGTTACCATGATTAGCG
AGCATCGATTCATATCGGGAGGTGACGACGGGAAAGTTTGTCTGTGGCAA
TTGAACAAGAAGAGGCCTTTGTCAAGTATTGAGCATGCTCATGGTATTGG
TCTTGGTTGCGATGCATGGATTTCGGCTGTATCTTCTTTCCGAAATACAG
ACCTCGCTGTCTCCGGGGCCGGCGATGGCATGCTTCGATTCTGGAAGTGC
GAAGATGTTCCACGGTTACAAGCAGTTGGTAGCCTGCACATCGGCCCAGG
GTTTGTTAATGGAATTGCAATTGGTCATCAAAATCGAGTTTTGGCCACTG
CAGTTGGCATAGAGCACAGACTAGGAAGGTGGACAGCGATTAAGAAGGCA
AAGAACACAATCCAGTTCATTTCTTTACCAAACTTTAGTTGA

protein sequence of Gchil6669.t1

>Gchil6669.t1 ID=Gchil6669.t1|Name=Gchil6669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=464bp
MVGKLTTRKRTRSSTDRTTQAPAFKRKQPEKDEEILSDEIDSDQEVDESS
VESSDESMHENETVEQKRLRLARDYLRHVGVSEDAAASGDEDSENGEIGA
SNKLLREQALRDQTMSFTHIADRFSSSISGLKVNKCKGHVLTPTCVALCS
QDDAIAVSGGKDARLILWDVETGKRRHVFKAIVGEANKKNPAAAKGHIGD
ILAVAITDDGNVAVSGGKDGLIRVWDIRARNLVKTLRGHRGPVSGLTFRS
GSRQLFSASADRTVKIWDINDMAYVETLFGHGGDVNAISSMAMERALSCG
RDGTLRLYKVVEGSQLVFRNANTISLDTVTMISEHRFISGGDDGKVCLWQ
LNKKRPLSSIEHAHGIGLGCDAWISAVSSFRNTDLAVSGAGDGMLRFWKC
EDVPRLQAVGSLHIGPGFVNGIAIGHQNRVLATAVGIEHRLGRWTAIKKA
KNTIQFISLPNFS*

mRNA from alignment at tig00004416_pilon:26162..27553+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6669.t1 ID=Gchil6669.t1|Name=Gchil6669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00004416_pilon:26162..27553+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGGCAAGCTTACTACACGAAAACGAACACGGTCAAGCACGGATCG
AACGACCCAGGCACCCGCTTTCAAGCGAAAACAACCTGAGAAAGATGAAG
AAATATTGTCTGATGAGATCGATAGCGACCAAGAAGTCGATGAAAGCTCA
GTTGAGTCATCTGATGAATCAATGCATGAGAACGAGACTGTGGAACAAAA
AAGACTTCGCTTAGCTCGTGATTATCTTCGACACGTCGGAGTTTCTGAAG
ATGCTGCAGCTTCCGGTGATGAAGATTCTGAAAATGGCGAAATTGGGGCT
AGTAACAAGTTATTGCGAGAACAGGCGTTGCGAGACCAGACCATGTCTTT
CACACATATTGCTGACAGATTCTCCTCTTCCATCAGCGGTCTTAAGGTTA
ACAAGTGCAAGGGGCATGTTTTAACACCAACGTGCGTTGCGCTATGCTCG
CAGGACGATGCTATAGCCGTGTCCGGCGGAAAAGATGCTAGACTAATTCT
ATGGGATGTTGAGACAGGCAAGCGTCGACATGTTTTCAAGGCAATCGTTG
GCGAAGCGAACAAGAAGAACCCGGCTGCCGCGAAAGGCCACATAGGGGAT
ATCCTGGCTGTGGCAATCACTGATGATGGAAACGTGGCCGTTTCTGGTGG
TAAAGATGGACTGATTCGTGTCTGGGATATTCGTGCTAGGAATTTAGTAA
AGACATTGCGGGGTCATAGAGGACCAGTGTCTGGACTCACCTTTCGGTCA
GGCTCACGGCAACTGTTTTCAGCATCGGCCGATCGCACTGTAAAGATATG
GGATATCAATGATATGGCTTATGTTGAGACTTTATTCGGACATGGAGGTG
ACGTCAACGCCATAAGCTCTATGGCTATGGAGCGTGCATTGTCTTGTGGG
AGGGACGGTACGCTCCGTTTATATAAAGTCGTTGAAGGATCTCAACTTGT
ATTTCGAAACGCAAATACTATTTCGCTGGATACGGTTACCATGATTAGCG
AGCATCGATTCATATCGGGAGGTGACGACGGGAAAGTTTGTCTGTGGCAA
TTGAACAAGAAGAGGCCTTTGTCAAGTATTGAGCATGCTCATGGTATTGG
TCTTGGTTGCGATGCATGGATTTCGGCTGTATCTTCTTTCCGAAATACAG
ACCTCGCTGTCTCCGGGGCCGGCGATGGCATGCTTCGATTCTGGAAGTGC
GAAGATGTTCCACGGTTACAAGCAGTTGGTAGCCTGCACATCGGCCCAGG
GTTTGTTAATGGAATTGCAATTGGTCATCAAAATCGAGTTTTGGCCACTG
CAGTTGGCATAGAGCACAGACTAGGAAGGTGGACAGCGATTAAGAAGGCA
AAGAACACAATCCAGTTCATTTCTTTACCAAACTTTAGTTGA

Coding sequence (CDS) from alignment at tig00004416_pilon:26162..27553+

>Gchil6669.t1 ID=Gchil6669.t1|Name=Gchil6669.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00004416_pilon:26162..27553+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCGGCAAGCTTACTACACGAAAACGAACACGGTCAAGCACGGATCG
AACGACCCAGGCACCCGCTTTCAAGCGAAAACAACCTGAGAAAGATGAAG
AAATATTGTCTGATGAGATCGATAGCGACCAAGAAGTCGATGAAAGCTCA
GTTGAGTCATCTGATGAATCAATGCATGAGAACGAGACTGTGGAACAAAA
AAGACTTCGCTTAGCTCGTGATTATCTTCGACACGTCGGAGTTTCTGAAG
ATGCTGCAGCTTCCGGTGATGAAGATTCTGAAAATGGCGAAATTGGGGCT
AGTAACAAGTTATTGCGAGAACAGGCGTTGCGAGACCAGACCATGTCTTT
CACACATATTGCTGACAGATTCTCCTCTTCCATCAGCGGTCTTAAGGTTA
ACAAGTGCAAGGGGCATGTTTTAACACCAACGTGCGTTGCGCTATGCTCG
CAGGACGATGCTATAGCCGTGTCCGGCGGAAAAGATGCTAGACTAATTCT
ATGGGATGTTGAGACAGGCAAGCGTCGACATGTTTTCAAGGCAATCGTTG
GCGAAGCGAACAAGAAGAACCCGGCTGCCGCGAAAGGCCACATAGGGGAT
ATCCTGGCTGTGGCAATCACTGATGATGGAAACGTGGCCGTTTCTGGTGG
TAAAGATGGACTGATTCGTGTCTGGGATATTCGTGCTAGGAATTTAGTAA
AGACATTGCGGGGTCATAGAGGACCAGTGTCTGGACTCACCTTTCGGTCA
GGCTCACGGCAACTGTTTTCAGCATCGGCCGATCGCACTGTAAAGATATG
GGATATCAATGATATGGCTTATGTTGAGACTTTATTCGGACATGGAGGTG
ACGTCAACGCCATAAGCTCTATGGCTATGGAGCGTGCATTGTCTTGTGGG
AGGGACGGTACGCTCCGTTTATATAAAGTCGTTGAAGGATCTCAACTTGT
ATTTCGAAACGCAAATACTATTTCGCTGGATACGGTTACCATGATTAGCG
AGCATCGATTCATATCGGGAGGTGACGACGGGAAAGTTTGTCTGTGGCAA
TTGAACAAGAAGAGGCCTTTGTCAAGTATTGAGCATGCTCATGGTATTGG
TCTTGGTTGCGATGCATGGATTTCGGCTGTATCTTCTTTCCGAAATACAG
ACCTCGCTGTCTCCGGGGCCGGCGATGGCATGCTTCGATTCTGGAAGTGC
GAAGATGTTCCACGGTTACAAGCAGTTGGTAGCCTGCACATCGGCCCAGG
GTTTGTTAATGGAATTGCAATTGGTCATCAAAATCGAGTTTTGGCCACTG
CAGTTGGCATAGAGCACAGACTAGGAAGGTGGACAGCGATTAAGAAGGCA
AAGAACACAATCCAGTTCATTTCTTTACCAAACTTTAGTTGA