Gchil6643.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6643.t1
Unique NameGchil6643.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:1308654..1310034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog27923.ML04528a-PA
Preferred nameICK
PFAMsPkinase
Max annot lvl33208|Metazoa
KEGG koko:K08828,ko:K08829
GOsGO:0000003,GO:0000165,GO:0000166,GO:0000287,GO:0001650,GO:0001750,GO:0001894,GO:0001895,GO:0001917,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0004707,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0005930,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007276,GO:0007283,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0010639,GO:0010970,GO:0015630,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022414,GO:0022607,GO:0023014,GO:0023052,GO:0030030,GO:0030031,GO:0030424,GO:0030425,GO:0030496,GO:0030554,GO:0030705,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031345,GO:0031346,GO:0031503,GO:0031514,GO:0031974,GO:0031981,GO:0032391,GO:0032501,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032838,GO:0033036,GO:0033043,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035869,GO:0036064,GO:0036094,GO:0036211,GO:0036477,GO:0042073,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044452,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045494,GO:0045724,GO:0045935,GO:0046777,GO:0046872,GO:0046907,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048871,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060249,GO:0060255,GO:0060271,GO:0060491,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0072686,GO:0080090,GO:0097014,GO:0097159,GO:0097367,GO:0097447,GO:0097458,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120033,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0140096,GO:0140110,GO:1901265,GO:1901363,GO:1901564,GO:1902017,GO:1902018,GO:1902115,GO:1902116,GO:1902117,GO:1902680,GO:1902855,GO:1902856,GO:1902857,GO:1903506,GO:1903508,GO:1905515,GO:2001141
Evalue1.68e-68
EggNOG OGsKOG0661@1|root,KOG0661@2759|Eukaryota,38F74@33154|Opisthokonta,3BBGX@33208|Metazoa
EC2.7.11.22
Descriptionnegative regulation of non-motile cilium assembly
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6643Gchil6643Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 1308654..1310034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6643.t1Gchil6643.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 1308654..1310034 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6643.t1.stop1Gchil6643.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 1308654..1308656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6643.t1.CDS1Gchil6643.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1308654..1309736 -
Gchil6643.t1.CDS2Gchil6643.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1309809..1309877 -
Gchil6643.t1.CDS3Gchil6643.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1309948..1310034 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6643.t1.exon1Gchil6643.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1308654..1309736 -
Gchil6643.t1.exon2Gchil6643.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1309809..1309877 -
Gchil6643.t1.exon3Gchil6643.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1309948..1310034 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6643.t1.intron1Gchil6643.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 1309737..1309808 -
Gchil6643.t1.intron2Gchil6643.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 1309878..1309947 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6643.t1.start1Gchil6643.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 1310032..1310034 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6643.t1 ID=Gchil6643.t1|Name=Gchil6643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=413bp
MHRYRIGTPIGEGAFGTVCQATHRESGEKVAIKTLKDKCKDINAMMELAE
IKALRSLSHPNIVGCKELLLDRKGHAHMVFELIPGGNLESLTRKREKRFT
ERQVRSVFFQLLRATSYMHAQRYLHRDIKPENILVQHFGSNGTIRIKLAD
LGLSKKLSPKNSRPHTTYVATRWYRSPEILLHMSNYGYPSDMWAIGTVMA
EMIRLGDPLFPGSNEDEQLARIIALRGHPSMVNWRAGEDVMKKRRIRLPK
VTTSSLKTVIRDASLPTLQLISDLLELDPNKRPTAAEALSYPLFVMDSHD
EEDVFRSRKRRKVISEDLDTARSREYPATAFTYRSEENPGVEEIDLLRAL
SCDEHHTLTPPENAVRPRQFYPSVSEPRVFHLSPLRRDHDDSEERFSGQR
KPAGLFSFHVVR*
back to top

spliced messenger RNA

>Gchil6643.t1 ID=Gchil6643.t1|Name=Gchil6643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00004390_pilon:1308654..1310034- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATAGATATCGCATCGGCACCCCCATAGGTGAAGGAGCCTTCGGCAC
GGTGTGTCAAGCAACTCATCGTGAATCAGGTGAAAAGGTTGCAATCAAGA
CTCTCAAAGATAAATGCAAAGACATCAATGCCATGATGGAACTGGCAGAG
ATCAAAGCCCTTCGTTCCCTGTCCCATCCGAATATTGTCGGCTGCAAAGA
GCTTCTTTTGGATCGAAAAGGCCATGCTCACATGGTTTTCGAGTTAATCC
CAGGCGGGAACCTCGAAAGCCTTACCAGAAAACGTGAAAAGCGGTTCACC
GAAAGGCAAGTAAGATCCGTTTTCTTTCAACTTTTGCGTGCCACGAGCTA
TATGCATGCTCAGAGATACCTGCATCGAGATATTAAGCCAGAGAACATTC
TAGTACAACATTTTGGATCTAACGGTACAATTAGGATAAAACTTGCGGAC
CTTGGACTTTCAAAGAAACTAAGCCCCAAGAATAGTCGTCCGCACACAAC
CTATGTTGCAACGAGATGGTATCGAAGCCCGGAAATTCTATTGCACATGT
CAAACTACGGATATCCCAGCGATATGTGGGCAATTGGTACCGTAATGGCT
GAAATGATTCGACTCGGGGACCCACTGTTCCCCGGAAGTAACGAAGATGA
ACAATTAGCTCGAATCATAGCTCTTAGAGGCCACCCATCTATGGTCAACT
GGAGAGCTGGAGAGGATGTCATGAAGAAGCGCAGGATACGCCTTCCCAAG
GTTACAACCTCATCTCTCAAAACAGTAATCCGAGACGCTAGTCTTCCGAC
GCTGCAACTTATCTCCGACTTGCTTGAGCTTGATCCGAACAAGCGCCCTA
CAGCAGCTGAAGCGCTCTCATACCCCTTGTTTGTCATGGACAGTCATGAT
GAAGAAGATGTGTTCCGATCCCGAAAACGCAGGAAGGTTATTTCTGAAGA
CCTTGATACGGCTAGATCAAGAGAGTACCCAGCGACAGCGTTCACGTATC
GAAGTGAAGAAAATCCTGGCGTTGAAGAGATTGACCTGTTGCGGGCACTG
TCATGTGATGAGCATCACACACTCACACCTCCAGAAAACGCAGTTCGCCC
CCGACAATTCTACCCATCGGTGTCTGAACCGCGTGTGTTTCATTTGTCAC
CTTTACGACGAGACCATGATGATTCAGAGGAACGTTTTTCAGGTCAGCGA
AAGCCAGCAGGGCTCTTTAGCTTTCACGTCGTGCGCTAG
back to top

protein sequence of Gchil6643.t1

>Gchil6643.t1 ID=Gchil6643.t1|Name=Gchil6643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=413bp
MHRYRIGTPIGEGAFGTVCQATHRESGEKVAIKTLKDKCKDINAMMELAE
IKALRSLSHPNIVGCKELLLDRKGHAHMVFELIPGGNLESLTRKREKRFT
ERQVRSVFFQLLRATSYMHAQRYLHRDIKPENILVQHFGSNGTIRIKLAD
LGLSKKLSPKNSRPHTTYVATRWYRSPEILLHMSNYGYPSDMWAIGTVMA
EMIRLGDPLFPGSNEDEQLARIIALRGHPSMVNWRAGEDVMKKRRIRLPK
VTTSSLKTVIRDASLPTLQLISDLLELDPNKRPTAAEALSYPLFVMDSHD
EEDVFRSRKRRKVISEDLDTARSREYPATAFTYRSEENPGVEEIDLLRAL
SCDEHHTLTPPENAVRPRQFYPSVSEPRVFHLSPLRRDHDDSEERFSGQR
KPAGLFSFHVVR*
back to top

mRNA from alignment at tig00004390_pilon:1308654..1310034-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6643.t1 ID=Gchil6643.t1|Name=Gchil6643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1381bp|location=Sequence derived from alignment at tig00004390_pilon:1308654..1310034- (Gracilaria chilensis NLEC103_M9 male)
ATGCATAGATATCGCATCGGCACCCCCATAGGTGAAGGAGCCTTCGGCAC
GGTGTGTCAAGCAACTCATCGTGAATCAGGTGAAAAGGTGAGTGTCAAAC
TTTACGTGTTCTCGTTGAACAGCTTGTGTGCTAATTCTACTATCTTTGTC
GATTCAGGTTGCAATCAAGACTCTCAAAGATAAATGCAAAGACATCAATG
CCATGATGGAACTGGCAGAGATCAAAGTGAGTTCCTCATTCCCATTTGAT
TTGCGAAGGACTATTCGAGTCTTCAATGGTCAAGCTGACCTTCAACAGGC
CCTTCGTTCCCTGTCCCATCCGAATATTGTCGGCTGCAAAGAGCTTCTTT
TGGATCGAAAAGGCCATGCTCACATGGTTTTCGAGTTAATCCCAGGCGGG
AACCTCGAAAGCCTTACCAGAAAACGTGAAAAGCGGTTCACCGAAAGGCA
AGTAAGATCCGTTTTCTTTCAACTTTTGCGTGCCACGAGCTATATGCATG
CTCAGAGATACCTGCATCGAGATATTAAGCCAGAGAACATTCTAGTACAA
CATTTTGGATCTAACGGTACAATTAGGATAAAACTTGCGGACCTTGGACT
TTCAAAGAAACTAAGCCCCAAGAATAGTCGTCCGCACACAACCTATGTTG
CAACGAGATGGTATCGAAGCCCGGAAATTCTATTGCACATGTCAAACTAC
GGATATCCCAGCGATATGTGGGCAATTGGTACCGTAATGGCTGAAATGAT
TCGACTCGGGGACCCACTGTTCCCCGGAAGTAACGAAGATGAACAATTAG
CTCGAATCATAGCTCTTAGAGGCCACCCATCTATGGTCAACTGGAGAGCT
GGAGAGGATGTCATGAAGAAGCGCAGGATACGCCTTCCCAAGGTTACAAC
CTCATCTCTCAAAACAGTAATCCGAGACGCTAGTCTTCCGACGCTGCAAC
TTATCTCCGACTTGCTTGAGCTTGATCCGAACAAGCGCCCTACAGCAGCT
GAAGCGCTCTCATACCCCTTGTTTGTCATGGACAGTCATGATGAAGAAGA
TGTGTTCCGATCCCGAAAACGCAGGAAGGTTATTTCTGAAGACCTTGATA
CGGCTAGATCAAGAGAGTACCCAGCGACAGCGTTCACGTATCGAAGTGAA
GAAAATCCTGGCGTTGAAGAGATTGACCTGTTGCGGGCACTGTCATGTGA
TGAGCATCACACACTCACACCTCCAGAAAACGCAGTTCGCCCCCGACAAT
TCTACCCATCGGTGTCTGAACCGCGTGTGTTTCATTTGTCACCTTTACGA
CGAGACCATGATGATTCAGAGGAACGTTTTTCAGGTCAGCGAAAGCCAGC
AGGGCTCTTTAGCTTTCACGTCGTGCGCTAG
back to top

Coding sequence (CDS) from alignment at tig00004390_pilon:1308654..1310034-

>Gchil6643.t1 ID=Gchil6643.t1|Name=Gchil6643.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1239bp|location=Sequence derived from alignment at tig00004390_pilon:1308654..1310034- (Gracilaria chilensis NLEC103_M9 male)
ATGCATAGATATCGCATCGGCACCCCCATAGGTGAAGGAGCCTTCGGCAC
GGTGTGTCAAGCAACTCATCGTGAATCAGGTGAAAAGGTTGCAATCAAGA
CTCTCAAAGATAAATGCAAAGACATCAATGCCATGATGGAACTGGCAGAG
ATCAAAGCCCTTCGTTCCCTGTCCCATCCGAATATTGTCGGCTGCAAAGA
GCTTCTTTTGGATCGAAAAGGCCATGCTCACATGGTTTTCGAGTTAATCC
CAGGCGGGAACCTCGAAAGCCTTACCAGAAAACGTGAAAAGCGGTTCACC
GAAAGGCAAGTAAGATCCGTTTTCTTTCAACTTTTGCGTGCCACGAGCTA
TATGCATGCTCAGAGATACCTGCATCGAGATATTAAGCCAGAGAACATTC
TAGTACAACATTTTGGATCTAACGGTACAATTAGGATAAAACTTGCGGAC
CTTGGACTTTCAAAGAAACTAAGCCCCAAGAATAGTCGTCCGCACACAAC
CTATGTTGCAACGAGATGGTATCGAAGCCCGGAAATTCTATTGCACATGT
CAAACTACGGATATCCCAGCGATATGTGGGCAATTGGTACCGTAATGGCT
GAAATGATTCGACTCGGGGACCCACTGTTCCCCGGAAGTAACGAAGATGA
ACAATTAGCTCGAATCATAGCTCTTAGAGGCCACCCATCTATGGTCAACT
GGAGAGCTGGAGAGGATGTCATGAAGAAGCGCAGGATACGCCTTCCCAAG
GTTACAACCTCATCTCTCAAAACAGTAATCCGAGACGCTAGTCTTCCGAC
GCTGCAACTTATCTCCGACTTGCTTGAGCTTGATCCGAACAAGCGCCCTA
CAGCAGCTGAAGCGCTCTCATACCCCTTGTTTGTCATGGACAGTCATGAT
GAAGAAGATGTGTTCCGATCCCGAAAACGCAGGAAGGTTATTTCTGAAGA
CCTTGATACGGCTAGATCAAGAGAGTACCCAGCGACAGCGTTCACGTATC
GAAGTGAAGAAAATCCTGGCGTTGAAGAGATTGACCTGTTGCGGGCACTG
TCATGTGATGAGCATCACACACTCACACCTCCAGAAAACGCAGTTCGCCC
CCGACAATTCTACCCATCGGTGTCTGAACCGCGTGTGTTTCATTTGTCAC
CTTTACGACGAGACCATGATGATTCAGAGGAACGTTTTTCAGGTCAGCGA
AAGCCAGCAGGGCTCTTTAGCTTTCACGTCGTGCGCTAG
back to top