Gchil6639.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6639.t1
Unique NameGchil6639.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:1251202..1251756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264402.Cagra.15418s0002.1.p
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0019216,GO:0019222,GO:0019747,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031647,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045828,GO:0045834,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0065007,GO:0065008,GO:0080090,GO:1904143
Evalue3.85e-10
EggNOG OGs28NS1@1|root,2QVC3@2759|Eukaryota,37KMB@33090|Viridiplantae,3G77B@35493|Streptophyta,3HTE1@3699|Brassicales
DescriptionEncodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6639Gchil6639Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 1251202..1251756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6639.t1Gchil6639.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 1251202..1251756 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6639.t1.start1Gchil6639.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 1251202..1251204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6639.t1.CDS1Gchil6639.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1251202..1251519 +
Gchil6639.t1.CDS2Gchil6639.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1251637..1251756 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6639.t1.exon1Gchil6639.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1251202..1251519 +
Gchil6639.t1.exon2Gchil6639.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1251637..1251756 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6639.t1.intron1Gchil6639.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 1251520..1251636 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6639.t1.stop1Gchil6639.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 1251754..1251756 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6639.t1 ID=Gchil6639.t1|Name=Gchil6639.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=146bp
MTIDPSTVGTGYAFLDSLKGVVIGPTVNEITAAFAGGTVGVMGTIITLEV
RRHKVKERKQCPYCRGSGKLPCATCYTVGSLPSAAAVASQKSCSTCNEKG
FLLCNHCDGDGRLIPWAYERAIRAQYEDYVYTAIDDYFQDGPPYI*
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spliced messenger RNA

>Gchil6639.t1 ID=Gchil6639.t1|Name=Gchil6639.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=438bp|location=Sequence derived from alignment at tig00004390_pilon:1251202..1251756+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAATTGATCCCAGTACAGTTGGAACTGGTTACGCTTTCCTTGATAG
TCTCAAAGGTGTCGTTATAGGGCCCACAGTGAATGAGATTACTGCTGCTT
TTGCGGGAGGCACCGTCGGTGTAATGGGTACAATCATCACACTAGAAGTT
AGGCGACACAAGGTCAAGGAACGAAAACAGTGTCCGTACTGCAGAGGAAG
TGGAAAGCTTCCTTGTGCTACATGCTACACAGTCGGTTCTTTGCCATCCG
CAGCAGCGGTAGCGTCACAGAAAAGCTGTTCAACATGCAATGAAAAGGGG
TTTCTCCTTTGCAATCATTGCGACGGGGATGGTCGTCTAATTCCATGGGC
GTATGAGCGCGCTATCCGCGCTCAATATGAAGATTACGTCTACACAGCGA
TTGATGACTACTTTCAAGATGGTCCCCCATACATATGA
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protein sequence of Gchil6639.t1

>Gchil6639.t1 ID=Gchil6639.t1|Name=Gchil6639.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=146bp
MTIDPSTVGTGYAFLDSLKGVVIGPTVNEITAAFAGGTVGVMGTIITLEV
RRHKVKERKQCPYCRGSGKLPCATCYTVGSLPSAAAVASQKSCSTCNEKG
FLLCNHCDGDGRLIPWAYERAIRAQYEDYVYTAIDDYFQDGPPYI*
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mRNA from alignment at tig00004390_pilon:1251202..1251756+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6639.t1 ID=Gchil6639.t1|Name=Gchil6639.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=555bp|location=Sequence derived from alignment at tig00004390_pilon:1251202..1251756+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAATTGATCCCAGTACAGTTGGAACTGGTTACGCTTTCCTTGATAG
TCTCAAAGGTGTCGTTATAGGGCCCACAGTGAATGAGATTACTGCTGCTT
TTGCGGGAGGCACCGTCGGTGTAATGGGTACAATCATCACACTAGAAGTT
AGGCGACACAAGGTCAAGGAACGAAAACAGTGTCCGTACTGCAGAGGAAG
TGGAAAGCTTCCTTGTGCTACATGCTACACAGTCGGTTCTTTGCCATCCG
CAGCAGCGGTAGCGTCACAGAAAAGCTGTTCAACATGCAATGAAAAGGGG
TTTCTCCTTTGCAATCATGTACGTCTTTTTTTTTTCAACACGATTATGTT
CCTTACTTTTTCAACTATCCGTTTTGAAAGTTCGTGAGCCCTCCAGTTTG
ATGTTGTGAAAACTAACATTTCTTGTACTGGACAGTGCGACGGGGATGGT
CGTCTAATTCCATGGGCGTATGAGCGCGCTATCCGCGCTCAATATGAAGA
TTACGTCTACACAGCGATTGATGACTACTTTCAAGATGGTCCCCCATACA
TATGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:1251202..1251756+

>Gchil6639.t1 ID=Gchil6639.t1|Name=Gchil6639.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=438bp|location=Sequence derived from alignment at tig00004390_pilon:1251202..1251756+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAATTGATCCCAGTACAGTTGGAACTGGTTACGCTTTCCTTGATAG
TCTCAAAGGTGTCGTTATAGGGCCCACAGTGAATGAGATTACTGCTGCTT
TTGCGGGAGGCACCGTCGGTGTAATGGGTACAATCATCACACTAGAAGTT
AGGCGACACAAGGTCAAGGAACGAAAACAGTGTCCGTACTGCAGAGGAAG
TGGAAAGCTTCCTTGTGCTACATGCTACACAGTCGGTTCTTTGCCATCCG
CAGCAGCGGTAGCGTCACAGAAAAGCTGTTCAACATGCAATGAAAAGGGG
TTTCTCCTTTGCAATCATTGCGACGGGGATGGTCGTCTAATTCCATGGGC
GTATGAGCGCGCTATCCGCGCTCAATATGAAGATTACGTCTACACAGCGA
TTGATGACTACTTTCAAGATGGTCCCCCATACATATGA
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