Gchil6637.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6637.t1
Unique NameGchil6637.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:1170880..1171562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706532.1
PFAMsIGPS
Max annot lvl2759|Eukaryota
Evalue2.83e-17
EggNOG OGsCOG0134@1|root,KOG4201@2759|Eukaryota
Descriptionindole-3-glycerol-phosphate synthase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6637Gchil6637Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 1170657..1171562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6637.t1Gchil6637.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 1170880..1171562 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6637.t1.stop1Gchil6637.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 1170880..1170882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6637.t1.CDS1Gchil6637.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1170880..1170898 -
Gchil6637.t1.CDS2Gchil6637.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1171012..1171562 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6637.t1.exon1Gchil6637.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1170880..1170898 -
Gchil6637.t1.exon2Gchil6637.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1171012..1171562 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6637.t1.intron1Gchil6637.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 1170899..1171011 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6637.t1.start1Gchil6637.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 1171560..1171562 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6637.t1 ID=Gchil6637.t1|Name=Gchil6637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=190bp
MGWKPSGLLREAVELKKLEVELMEATLQERPDHPINMCRSFYAHESSHRF
SKALRRRDRTLSIVAAIKRFRPPPLGKTATKIADLEDIGREARALSVNGV
DAAFVFTDMLQYGVETRELSKIAGLLRISNVDPGMPVARQDLVIDAVQIA
EAVVAGAAAVNIVAAAALPDIMDLMNAATAMGIDRGKVD*
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spliced messenger RNA

>Gchil6637.t1 ID=Gchil6637.t1|Name=Gchil6637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00004390_pilon:1170880..1171562- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGGAAACCCAGCGGGTTGCTTCGCGAAGCAGTGGAACTTAAGAA
ACTTGAAGTTGAGTTAATGGAAGCGACTCTACAAGAACGCCCCGACCACC
CAATCAACATGTGTCGTTCTTTCTATGCCCATGAAAGTTCACATCGGTTT
TCGAAAGCCCTCAGAAGACGAGACAGAACCCTCTCGATTGTTGCTGCGAT
TAAAAGGTTTCGTCCTCCACCTCTGGGCAAAACAGCTACAAAAATCGCTG
ACTTGGAAGATATTGGGCGTGAAGCAAGAGCTCTCAGCGTAAATGGAGTC
GATGCAGCTTTCGTATTCACTGATATGCTGCAATACGGAGTTGAAACTAG
GGAGTTATCGAAGATCGCAGGGCTGTTAAGGATTTCTAATGTTGATCCTG
GAATGCCGGTCGCAAGGCAAGATCTTGTAATCGACGCGGTACAAATCGCG
GAGGCTGTAGTCGCTGGTGCAGCGGCTGTAAACATAGTTGCCGCAGCGGC
CCTACCTGACATTATGGATCTCATGAATGCCGCGACCGCCATGGGTATTG
ATCGCGGAAAGGTTGATTGA
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protein sequence of Gchil6637.t1

>Gchil6637.t1 ID=Gchil6637.t1|Name=Gchil6637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=190bp
MGWKPSGLLREAVELKKLEVELMEATLQERPDHPINMCRSFYAHESSHRF
SKALRRRDRTLSIVAAIKRFRPPPLGKTATKIADLEDIGREARALSVNGV
DAAFVFTDMLQYGVETRELSKIAGLLRISNVDPGMPVARQDLVIDAVQIA
EAVVAGAAAVNIVAAAALPDIMDLMNAATAMGIDRGKVD*
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mRNA from alignment at tig00004390_pilon:1170880..1171562-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6637.t1 ID=Gchil6637.t1|Name=Gchil6637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=683bp|location=Sequence derived from alignment at tig00004390_pilon:1170880..1171562- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTGGAAACCCAGCGGGTTGCTTCGCGAAGCAGTGGAACTTAAGAA
ACTTGAAGTTGAGTTAATGGAAGCGACTCTACAAGAACGCCCCGACCACC
CAATCAACATGTGTCGTTCTTTCTATGCCCATGAAAGTTCACATCGGTTT
TCGAAAGCCCTCAGAAGACGAGACAGAACCCTCTCGATTGTTGCTGCGAT
TAAAAGGTTTCGTCCTCCACCTCTGGGCAAAACAGCTACAAAAATCGCTG
ACTTGGAAGATATTGGGCGTGAAGCAAGAGCTCTCAGCGTAAATGGAGTC
GATGCAGCTTTCGTATTCACTGATATGCTGCAATACGGAGTTGAAACTAG
GGAGTTATCGAAGATCGCAGGGCTGTTAAGGATTTCTAATGTTGATCCTG
GAATGCCGGTCGCAAGGCAAGATCTTGTAATCGACGCGGTACAAATCGCG
GAGGCTGTAGTCGCTGGTGCAGCGGCTGTAAACATAGTTGCCGCAGCGGC
CCTACCTGACATTATGGATCTCATGAATGCCGCGACCGCCATGGGTATTG
AGTCAGTTGTCGAATGTCACACAGAACTAGAAAGAGATTTTGCCATGGAC
TGCGGGGCAACTATACTGTACCTGACGAACTGGGATCGTTCCAGAAATGT
ATTGGTACCTGGAGTCGCGGAAAGGTTGATTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:1170880..1171562-

>Gchil6637.t1 ID=Gchil6637.t1|Name=Gchil6637.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00004390_pilon:1170880..1171562- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTGGAAACCCAGCGGGTTGCTTCGCGAAGCAGTGGAACTTAAGAA
ACTTGAAGTTGAGTTAATGGAAGCGACTCTACAAGAACGCCCCGACCACC
CAATCAACATGTGTCGTTCTTTCTATGCCCATGAAAGTTCACATCGGTTT
TCGAAAGCCCTCAGAAGACGAGACAGAACCCTCTCGATTGTTGCTGCGAT
TAAAAGGTTTCGTCCTCCACCTCTGGGCAAAACAGCTACAAAAATCGCTG
ACTTGGAAGATATTGGGCGTGAAGCAAGAGCTCTCAGCGTAAATGGAGTC
GATGCAGCTTTCGTATTCACTGATATGCTGCAATACGGAGTTGAAACTAG
GGAGTTATCGAAGATCGCAGGGCTGTTAAGGATTTCTAATGTTGATCCTG
GAATGCCGGTCGCAAGGCAAGATCTTGTAATCGACGCGGTACAAATCGCG
GAGGCTGTAGTCGCTGGTGCAGCGGCTGTAAACATAGTTGCCGCAGCGGC
CCTACCTGACATTATGGATCTCATGAATGCCGCGACCGCCATGGGTATTG
ATCGCGGAAAGGTTGATTGA
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