Gchil6629.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6629.t1
Unique NameGchil6629.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length476
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:1018306..1019733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF058CT
PFAMsCation_efflux
Max annot lvl2759|Eukaryota
KEGG koko:K14689
KEGG TC2.A.4.3.1,2.A.4.3.4
Evalue1.59e-68
EggNOG OGsCOG1230@1|root,KOG1482@2759|Eukaryota
Descriptionregulation of sequestering of zinc ion
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6629Gchil6629Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 1018306..1019733 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6629.t1.stop1Gchil6629.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 1018306..1018308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6629.t1.CDS1Gchil6629.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 1018306..1019733 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6629.t1.exon1Gchil6629.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 1018306..1019733 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6629.t1.start1Gchil6629.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 1019731..1019733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6629.t1Gchil6629.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 1018306..1019733 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6629.t1 ID=Gchil6629.t1|Name=Gchil6629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=476bp
MPLHNHFFAYDDQINDELLAASPGPLPRSSLVMVPSPKETDALLATSNSM
HKLDAKGEIRTLTYACALTTFFFFVELVGGHLAGSLAIMSDAAHLLSDLA
GFMISLIAVSVSHLPPNARMSFGFARAEVLGAFVSILFIWALTIVLVVFA
IERLFNPTPVNASMMLMLGIIGLFVNITLGSVLGHGSHSHSYGHHSHDHG
NGHHTHVDSFVPNHDLPNGNLENSLRDKDLESGRLSKTLSDAPDTYHQDN
DHEHVHPGHYDNDHEHPHHHMKDHRHGDAQENGRNEQSSKSRALENHKSV
NMRAAYLHVLGDALQNVGVIVAAIAMIIKPSWTFFDPLCTLLFAGIVMMT
TRDLAKETMMVLMEGTPGSMELEDIHARLLDLNGVSNVGDLHVWSITPRR
PALSVHLYQENVAEGHDVVKDAQKMLARDFGILHATIQVNCETAECCDEV
LSFEVDSSNNDCVSYRPQNGTIASG*
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spliced messenger RNA

>Gchil6629.t1 ID=Gchil6629.t1|Name=Gchil6629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00004390_pilon:1018306..1019733- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCTGCATAACCATTTCTTCGCGTACGACGACCAAATTAATGACGA
GCTTCTCGCTGCCTCACCAGGACCTCTACCTCGCTCATCATTAGTTATGG
TTCCATCTCCGAAAGAAACAGACGCGCTGTTGGCCACATCCAACTCCATG
CACAAGTTAGATGCCAAAGGCGAAATTCGAACTCTAACATATGCCTGCGC
TCTCACAACGTTTTTCTTCTTTGTAGAGCTTGTAGGTGGCCATCTGGCCG
GTTCGCTCGCAATCATGTCTGATGCTGCCCACCTTCTTTCGGACCTTGCC
GGTTTCATGATTTCGTTGATCGCTGTTTCTGTTTCCCATCTACCGCCTAA
CGCACGTATGAGTTTTGGTTTTGCTCGCGCAGAAGTTCTCGGTGCTTTTG
TATCCATTCTGTTCATTTGGGCCTTAACAATCGTCTTAGTAGTATTTGCG
ATCGAGAGACTGTTCAATCCTACGCCAGTGAACGCCTCGATGATGCTCAT
GTTGGGAATCATAGGTCTTTTCGTTAACATCACGCTGGGCTCTGTTCTCG
GTCATGGTAGCCACTCACACAGTTACGGTCACCATAGTCATGATCACGGC
AATGGCCATCATACTCATGTGGATAGTTTTGTGCCAAATCATGACTTGCC
GAACGGGAACTTGGAAAATTCACTGCGTGACAAAGACTTGGAAAGTGGCC
GTTTATCGAAGACCTTGAGCGACGCCCCAGACACTTACCACCAGGATAAC
GACCATGAACATGTGCATCCTGGACACTACGATAATGACCATGAACATCC
GCACCACCACATGAAAGATCACAGGCACGGAGATGCGCAAGAGAATGGAA
GGAATGAGCAATCATCCAAATCGCGCGCATTGGAAAATCATAAAAGTGTC
AATATGAGAGCCGCCTACCTGCATGTTCTTGGAGATGCTCTGCAGAACGT
CGGTGTCATAGTGGCTGCGATCGCCATGATTATCAAACCTTCATGGACTT
TTTTTGACCCGTTGTGCACGCTTCTTTTCGCAGGAATTGTTATGATGACC
ACCAGAGATCTTGCTAAAGAAACAATGATGGTGTTAATGGAAGGAACACC
AGGATCAATGGAGCTAGAGGACATCCATGCCAGGCTTCTTGACCTGAATG
GAGTTAGCAACGTTGGAGACTTGCATGTTTGGTCCATAACACCCAGACGT
CCGGCTTTGAGTGTTCACTTGTACCAGGAGAATGTCGCCGAAGGTCATGA
CGTCGTAAAAGACGCGCAGAAAATGCTCGCAAGGGATTTTGGAATTCTTC
ACGCAACTATTCAAGTTAATTGCGAGACTGCTGAGTGCTGTGACGAAGTA
TTATCTTTCGAGGTTGACTCTTCAAATAATGATTGTGTATCCTATCGCCC
GCAAAACGGCACCATCGCGTCGGGGTGA
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protein sequence of Gchil6629.t1

>Gchil6629.t1 ID=Gchil6629.t1|Name=Gchil6629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=476bp
MPLHNHFFAYDDQINDELLAASPGPLPRSSLVMVPSPKETDALLATSNSM
HKLDAKGEIRTLTYACALTTFFFFVELVGGHLAGSLAIMSDAAHLLSDLA
GFMISLIAVSVSHLPPNARMSFGFARAEVLGAFVSILFIWALTIVLVVFA
IERLFNPTPVNASMMLMLGIIGLFVNITLGSVLGHGSHSHSYGHHSHDHG
NGHHTHVDSFVPNHDLPNGNLENSLRDKDLESGRLSKTLSDAPDTYHQDN
DHEHVHPGHYDNDHEHPHHHMKDHRHGDAQENGRNEQSSKSRALENHKSV
NMRAAYLHVLGDALQNVGVIVAAIAMIIKPSWTFFDPLCTLLFAGIVMMT
TRDLAKETMMVLMEGTPGSMELEDIHARLLDLNGVSNVGDLHVWSITPRR
PALSVHLYQENVAEGHDVVKDAQKMLARDFGILHATIQVNCETAECCDEV
LSFEVDSSNNDCVSYRPQNGTIASG*
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mRNA from alignment at tig00004390_pilon:1018306..1019733-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6629.t1 ID=Gchil6629.t1|Name=Gchil6629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1428bp|location=Sequence derived from alignment at tig00004390_pilon:1018306..1019733- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCTGCATAACCATTTCTTCGCGTACGACGACCAAATTAATGACGA
GCTTCTCGCTGCCTCACCAGGACCTCTACCTCGCTCATCATTAGTTATGG
TTCCATCTCCGAAAGAAACAGACGCGCTGTTGGCCACATCCAACTCCATG
CACAAGTTAGATGCCAAAGGCGAAATTCGAACTCTAACATATGCCTGCGC
TCTCACAACGTTTTTCTTCTTTGTAGAGCTTGTAGGTGGCCATCTGGCCG
GTTCGCTCGCAATCATGTCTGATGCTGCCCACCTTCTTTCGGACCTTGCC
GGTTTCATGATTTCGTTGATCGCTGTTTCTGTTTCCCATCTACCGCCTAA
CGCACGTATGAGTTTTGGTTTTGCTCGCGCAGAAGTTCTCGGTGCTTTTG
TATCCATTCTGTTCATTTGGGCCTTAACAATCGTCTTAGTAGTATTTGCG
ATCGAGAGACTGTTCAATCCTACGCCAGTGAACGCCTCGATGATGCTCAT
GTTGGGAATCATAGGTCTTTTCGTTAACATCACGCTGGGCTCTGTTCTCG
GTCATGGTAGCCACTCACACAGTTACGGTCACCATAGTCATGATCACGGC
AATGGCCATCATACTCATGTGGATAGTTTTGTGCCAAATCATGACTTGCC
GAACGGGAACTTGGAAAATTCACTGCGTGACAAAGACTTGGAAAGTGGCC
GTTTATCGAAGACCTTGAGCGACGCCCCAGACACTTACCACCAGGATAAC
GACCATGAACATGTGCATCCTGGACACTACGATAATGACCATGAACATCC
GCACCACCACATGAAAGATCACAGGCACGGAGATGCGCAAGAGAATGGAA
GGAATGAGCAATCATCCAAATCGCGCGCATTGGAAAATCATAAAAGTGTC
AATATGAGAGCCGCCTACCTGCATGTTCTTGGAGATGCTCTGCAGAACGT
CGGTGTCATAGTGGCTGCGATCGCCATGATTATCAAACCTTCATGGACTT
TTTTTGACCCGTTGTGCACGCTTCTTTTCGCAGGAATTGTTATGATGACC
ACCAGAGATCTTGCTAAAGAAACAATGATGGTGTTAATGGAAGGAACACC
AGGATCAATGGAGCTAGAGGACATCCATGCCAGGCTTCTTGACCTGAATG
GAGTTAGCAACGTTGGAGACTTGCATGTTTGGTCCATAACACCCAGACGT
CCGGCTTTGAGTGTTCACTTGTACCAGGAGAATGTCGCCGAAGGTCATGA
CGTCGTAAAAGACGCGCAGAAAATGCTCGCAAGGGATTTTGGAATTCTTC
ACGCAACTATTCAAGTTAATTGCGAGACTGCTGAGTGCTGTGACGAAGTA
TTATCTTTCGAGGTTGACTCTTCAAATAATGATTGTGTATCCTATCGCCC
GCAAAACGGCACCATCGCGTCGGGGTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:1018306..1019733-

>Gchil6629.t1 ID=Gchil6629.t1|Name=Gchil6629.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1428bp|location=Sequence derived from alignment at tig00004390_pilon:1018306..1019733- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTCTGCATAACCATTTCTTCGCGTACGACGACCAAATTAATGACGA
GCTTCTCGCTGCCTCACCAGGACCTCTACCTCGCTCATCATTAGTTATGG
TTCCATCTCCGAAAGAAACAGACGCGCTGTTGGCCACATCCAACTCCATG
CACAAGTTAGATGCCAAAGGCGAAATTCGAACTCTAACATATGCCTGCGC
TCTCACAACGTTTTTCTTCTTTGTAGAGCTTGTAGGTGGCCATCTGGCCG
GTTCGCTCGCAATCATGTCTGATGCTGCCCACCTTCTTTCGGACCTTGCC
GGTTTCATGATTTCGTTGATCGCTGTTTCTGTTTCCCATCTACCGCCTAA
CGCACGTATGAGTTTTGGTTTTGCTCGCGCAGAAGTTCTCGGTGCTTTTG
TATCCATTCTGTTCATTTGGGCCTTAACAATCGTCTTAGTAGTATTTGCG
ATCGAGAGACTGTTCAATCCTACGCCAGTGAACGCCTCGATGATGCTCAT
GTTGGGAATCATAGGTCTTTTCGTTAACATCACGCTGGGCTCTGTTCTCG
GTCATGGTAGCCACTCACACAGTTACGGTCACCATAGTCATGATCACGGC
AATGGCCATCATACTCATGTGGATAGTTTTGTGCCAAATCATGACTTGCC
GAACGGGAACTTGGAAAATTCACTGCGTGACAAAGACTTGGAAAGTGGCC
GTTTATCGAAGACCTTGAGCGACGCCCCAGACACTTACCACCAGGATAAC
GACCATGAACATGTGCATCCTGGACACTACGATAATGACCATGAACATCC
GCACCACCACATGAAAGATCACAGGCACGGAGATGCGCAAGAGAATGGAA
GGAATGAGCAATCATCCAAATCGCGCGCATTGGAAAATCATAAAAGTGTC
AATATGAGAGCCGCCTACCTGCATGTTCTTGGAGATGCTCTGCAGAACGT
CGGTGTCATAGTGGCTGCGATCGCCATGATTATCAAACCTTCATGGACTT
TTTTTGACCCGTTGTGCACGCTTCTTTTCGCAGGAATTGTTATGATGACC
ACCAGAGATCTTGCTAAAGAAACAATGATGGTGTTAATGGAAGGAACACC
AGGATCAATGGAGCTAGAGGACATCCATGCCAGGCTTCTTGACCTGAATG
GAGTTAGCAACGTTGGAGACTTGCATGTTTGGTCCATAACACCCAGACGT
CCGGCTTTGAGTGTTCACTTGTACCAGGAGAATGTCGCCGAAGGTCATGA
CGTCGTAAAAGACGCGCAGAAAATGCTCGCAAGGGATTTTGGAATTCTTC
ACGCAACTATTCAAGTTAATTGCGAGACTGCTGAGTGCTGTGACGAAGTA
TTATCTTTCGAGGTTGACTCTTCAAATAATGATTGTGTATCCTATCGCCC
GCAAAACGGCACCATCGCGTCGGGGTGA
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