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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005709109.1 |
| Preferred name | SPATA20 |
| PFAMs | GlcNAc_2-epim,Thioredox_DsbH |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00002 |
| KEGG ko | ko:K00943 |
| KEGG Reaction | R02094,R02098 |
| KEGG Pathway | ko00240,ko01100,map00240,map01100 |
| KEGG Module | M00053 |
| GOs | GO:0000003,GO:0007276,GO:0007283,GO:0008150,GO:0019953,GO:0022414,GO:0032501,GO:0032504,GO:0044703,GO:0048232,GO:0048609,GO:0051704 |
| Evalue | 6.07e-162 |
| EggNOG OGs | COG1331@1|root,KOG2244@2759|Eukaryota |
| EC | 2.7.4.9 |
| Description | spermatogenesis |
| COG category | O |
| BRITE | ko00000,ko00001,ko00002,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil6628.t1 ID=Gchil6628.t1|Name=Gchil6628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=839bp MVRVPISSEKNKGLIVSEAYMHFGHFGRSNYSRVHPPSILHISFAYTSIS RLQALSGTGLGNQLKSSAFSPIFLRKDCLKCTRHRITKPLPSCNSTANGS DLSSESVQSGLVARVAPFTSQKPNFLISETSRYLADSAYDLVHWYPWGHQ AFVAARNEQKPILLSSGFLSCHMCDVMSDHFCDPEIACILNERFICVKVD REERPDVDSVYNSFVQAVTGRTGWPLTCFLTPGLIPFVGTTYLPKERLLN AVKSIADRWETNREKVEADGTKVVDALRDLFARREITSQPTVNVETLQQA FDATVASFDVENGGFGSAPKFLRPSVFEFLLSVHQSAQFDEGIRCEALEM VFYSLRLIAGGGIHDHVGGGFFRYSLDASWEVPHFEKILPDQAQLAMTFL HAYLLSGDQKFSGVVCKTLDFVMREMWDEDTGAIYSAIHADSKPLYDITK TSAEGAFYTFSSFELMLILGEPASTIFQKRFGVTAAGNVSESAVAKAEYG GLEGLNVLRITTPVSQIADEVGLSEAEINSILKTSLETIFKERERRPRPR TDDLSIASWMALAISAFMRAGRSLNRPDYIAVAEKAASLIRRSMVIQIDE VSDAIYLARAYRGKRGTVQALADDYTCSIQAFLDCYEVTGDLEHLHFARQ LQNALDTRFWVEGGYCNAVRGDKDILLRRVEDYDGAEPAASSVAVLNLIR MASLFGDDTLWSRAKSIINSFKKTFENSPLAMPFLLSSAHPLVQDISQRV VVVGNNEEASNLLDVYWSQGLARHIGMLRLPLKKCSKQLLQYFSPDRQAL GQDLRNSTAFVCIGGDCFEPTSDLDRFVCELRRLRISE* back to topspliced messenger RNA >Gchil6628.t1 ID=Gchil6628.t1|Name=Gchil6628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2517bp|location=Sequence derived from alignment at tig00004390_pilon:1015531..1018047+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCCGGGTTCCGATCTCTTCCGAGAAGAATAAAGGTCTGATTGTTTC GGAAGCGTACATGCATTTCGGCCATTTCGGCCGTTCCAATTACTCAAGGG TCCATCCACCCTCTATACTACACATAAGTTTCGCCTATACCTCAATTTCG CGTTTACAGGCTCTCAGCGGCACAGGCCTTGGGAACCAGCTGAAGTCATC TGCCTTCTCTCCAATTTTCCTACGAAAGGATTGTCTGAAATGCACCCGCC ATAGGATCACGAAACCACTGCCAAGCTGTAACAGCACCGCGAATGGCTCA GATTTGTCAAGTGAATCCGTGCAATCTGGTCTTGTGGCCCGAGTTGCGCC GTTCACTTCACAAAAACCGAATTTCCTCATCTCCGAGACTAGTCGCTATC TTGCTGATTCCGCCTATGATCTGGTGCATTGGTATCCATGGGGTCACCAA GCGTTTGTGGCGGCTCGAAACGAGCAGAAGCCAATACTCTTGTCTTCTGG ATTTTTGAGTTGTCATATGTGCGATGTGATGTCTGACCATTTCTGCGATC CGGAAATTGCTTGTATTCTGAATGAGAGGTTCATATGTGTTAAAGTTGAT CGCGAAGAGCGCCCCGATGTCGACTCAGTGTACAACTCTTTTGTACAGGC CGTTACGGGAAGAACAGGGTGGCCTTTAACATGCTTTTTGACTCCTGGTC TCATTCCTTTCGTTGGCACTACATATCTTCCCAAAGAAAGGCTTTTGAAT GCCGTAAAGTCTATCGCCGACCGGTGGGAGACGAACCGTGAAAAGGTAGA GGCGGATGGAACAAAAGTTGTTGACGCCCTGCGCGACTTATTTGCGCGCA GAGAGATTACCTCCCAACCAACTGTCAACGTTGAAACCTTACAACAAGCC TTTGATGCTACAGTTGCGAGTTTTGACGTCGAAAACGGCGGCTTCGGATC TGCGCCCAAATTTCTACGTCCTTCCGTATTCGAATTTCTATTATCCGTTC ATCAGTCAGCCCAGTTTGATGAAGGTATTCGATGTGAAGCACTAGAAATG GTGTTTTACAGTTTGCGACTTATAGCTGGAGGAGGTATACACGACCATGT TGGGGGAGGGTTCTTCAGGTATTCACTAGATGCTTCATGGGAAGTACCAC ACTTCGAAAAGATTCTTCCGGACCAGGCCCAGCTTGCGATGACTTTTTTA CATGCATATCTGTTGTCAGGAGATCAAAAGTTTAGCGGTGTGGTATGCAA GACGTTGGATTTTGTCATGCGAGAAATGTGGGACGAAGATACTGGTGCCA TATACAGTGCCATTCACGCTGATTCAAAGCCCTTATACGACATTACCAAA ACATCTGCGGAAGGTGCGTTTTACACCTTTAGTTCCTTTGAGCTAATGCT GATCCTTGGCGAACCAGCAAGCACAATATTCCAAAAACGTTTCGGAGTCA CAGCAGCGGGTAATGTTTCAGAGTCAGCTGTTGCGAAGGCGGAGTACGGT GGCCTTGAAGGACTTAACGTATTGCGAATTACAACACCTGTATCCCAAAT TGCGGACGAAGTTGGCCTCTCAGAAGCAGAGATCAACAGCATATTGAAGA CCTCGCTTGAAACGATTTTCAAGGAACGAGAAAGGAGGCCAAGACCGCGT ACAGACGACCTTTCTATAGCTTCTTGGATGGCTCTGGCAATCTCAGCATT CATGAGAGCAGGGCGATCCCTGAATAGACCAGATTACATTGCCGTTGCTG AGAAAGCAGCTAGTTTAATAAGACGATCGATGGTAATTCAAATTGATGAA GTGTCAGACGCCATTTATCTGGCTCGTGCTTATCGTGGAAAGAGAGGAAC AGTACAGGCACTTGCAGACGATTATACTTGCAGTATACAGGCCTTCCTCG ACTGCTATGAGGTCACTGGAGATTTGGAACATCTACATTTTGCGCGACAG CTACAAAACGCACTAGATACTCGCTTTTGGGTAGAAGGTGGATATTGTAA TGCGGTGAGAGGCGACAAAGACATTCTGCTGAGAAGAGTTGAGGACTATG ATGGTGCCGAGCCCGCAGCATCCAGTGTTGCTGTCCTTAACCTTATTCGG ATGGCTTCTTTGTTTGGAGATGACACACTCTGGAGTCGGGCCAAATCTAT CATAAATTCATTCAAGAAAACGTTTGAAAATAGCCCCCTCGCCATGCCAT TTCTACTCTCATCTGCTCATCCTCTTGTCCAAGATATATCTCAGAGAGTT GTGGTCGTCGGGAATAACGAAGAAGCTTCGAATTTACTGGACGTGTACTG GTCGCAGGGTCTCGCCCGCCACATCGGCATGCTGCGGCTTCCATTGAAGA AATGCTCAAAGCAACTTTTGCAGTACTTCTCCCCCGATCGGCAAGCTTTG GGGCAGGATCTAAGGAACAGTACAGCGTTTGTTTGCATAGGTGGGGATTG CTTCGAACCGACGAGTGACCTCGATCGATTTGTATGTGAGCTTCGACGAC TAAGAATCAGCGAGTAG back to topprotein sequence of Gchil6628.t1 >Gchil6628.t1 ID=Gchil6628.t1|Name=Gchil6628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=839bp
MVRVPISSEKNKGLIVSEAYMHFGHFGRSNYSRVHPPSILHISFAYTSIS RLQALSGTGLGNQLKSSAFSPIFLRKDCLKCTRHRITKPLPSCNSTANGS DLSSESVQSGLVARVAPFTSQKPNFLISETSRYLADSAYDLVHWYPWGHQ AFVAARNEQKPILLSSGFLSCHMCDVMSDHFCDPEIACILNERFICVKVD REERPDVDSVYNSFVQAVTGRTGWPLTCFLTPGLIPFVGTTYLPKERLLN AVKSIADRWETNREKVEADGTKVVDALRDLFARREITSQPTVNVETLQQA FDATVASFDVENGGFGSAPKFLRPSVFEFLLSVHQSAQFDEGIRCEALEM VFYSLRLIAGGGIHDHVGGGFFRYSLDASWEVPHFEKILPDQAQLAMTFL HAYLLSGDQKFSGVVCKTLDFVMREMWDEDTGAIYSAIHADSKPLYDITK TSAEGAFYTFSSFELMLILGEPASTIFQKRFGVTAAGNVSESAVAKAEYG GLEGLNVLRITTPVSQIADEVGLSEAEINSILKTSLETIFKERERRPRPR TDDLSIASWMALAISAFMRAGRSLNRPDYIAVAEKAASLIRRSMVIQIDE VSDAIYLARAYRGKRGTVQALADDYTCSIQAFLDCYEVTGDLEHLHFARQ LQNALDTRFWVEGGYCNAVRGDKDILLRRVEDYDGAEPAASSVAVLNLIR MASLFGDDTLWSRAKSIINSFKKTFENSPLAMPFLLSSAHPLVQDISQRV VVVGNNEEASNLLDVYWSQGLARHIGMLRLPLKKCSKQLLQYFSPDRQAL GQDLRNSTAFVCIGGDCFEPTSDLDRFVCELRRLRISE* back to topmRNA from alignment at tig00004390_pilon:1015531..1018047+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil6628.t1 ID=Gchil6628.t1|Name=Gchil6628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2517bp|location=Sequence derived from alignment at tig00004390_pilon:1015531..1018047+ (Gracilaria chilensis NLEC103_M9 male) ATGGTCCGGGTTCCGATCTCTTCCGAGAAGAATAAAGGTCTGATTGTTTC
GGAAGCGTACATGCATTTCGGCCATTTCGGCCGTTCCAATTACTCAAGGG
TCCATCCACCCTCTATACTACACATAAGTTTCGCCTATACCTCAATTTCG
CGTTTACAGGCTCTCAGCGGCACAGGCCTTGGGAACCAGCTGAAGTCATC
TGCCTTCTCTCCAATTTTCCTACGAAAGGATTGTCTGAAATGCACCCGCC
ATAGGATCACGAAACCACTGCCAAGCTGTAACAGCACCGCGAATGGCTCA
GATTTGTCAAGTGAATCCGTGCAATCTGGTCTTGTGGCCCGAGTTGCGCC
GTTCACTTCACAAAAACCGAATTTCCTCATCTCCGAGACTAGTCGCTATC
TTGCTGATTCCGCCTATGATCTGGTGCATTGGTATCCATGGGGTCACCAA
GCGTTTGTGGCGGCTCGAAACGAGCAGAAGCCAATACTCTTGTCTTCTGG
ATTTTTGAGTTGTCATATGTGCGATGTGATGTCTGACCATTTCTGCGATC
CGGAAATTGCTTGTATTCTGAATGAGAGGTTCATATGTGTTAAAGTTGAT
CGCGAAGAGCGCCCCGATGTCGACTCAGTGTACAACTCTTTTGTACAGGC
CGTTACGGGAAGAACAGGGTGGCCTTTAACATGCTTTTTGACTCCTGGTC
TCATTCCTTTCGTTGGCACTACATATCTTCCCAAAGAAAGGCTTTTGAAT
GCCGTAAAGTCTATCGCCGACCGGTGGGAGACGAACCGTGAAAAGGTAGA
GGCGGATGGAACAAAAGTTGTTGACGCCCTGCGCGACTTATTTGCGCGCA
GAGAGATTACCTCCCAACCAACTGTCAACGTTGAAACCTTACAACAAGCC
TTTGATGCTACAGTTGCGAGTTTTGACGTCGAAAACGGCGGCTTCGGATC
TGCGCCCAAATTTCTACGTCCTTCCGTATTCGAATTTCTATTATCCGTTC
ATCAGTCAGCCCAGTTTGATGAAGGTATTCGATGTGAAGCACTAGAAATG
GTGTTTTACAGTTTGCGACTTATAGCTGGAGGAGGTATACACGACCATGT
TGGGGGAGGGTTCTTCAGGTATTCACTAGATGCTTCATGGGAAGTACCAC
ACTTCGAAAAGATTCTTCCGGACCAGGCCCAGCTTGCGATGACTTTTTTA
CATGCATATCTGTTGTCAGGAGATCAAAAGTTTAGCGGTGTGGTATGCAA
GACGTTGGATTTTGTCATGCGAGAAATGTGGGACGAAGATACTGGTGCCA
TATACAGTGCCATTCACGCTGATTCAAAGCCCTTATACGACATTACCAAA
ACATCTGCGGAAGGTGCGTTTTACACCTTTAGTTCCTTTGAGCTAATGCT
GATCCTTGGCGAACCAGCAAGCACAATATTCCAAAAACGTTTCGGAGTCA
CAGCAGCGGGTAATGTTTCAGAGTCAGCTGTTGCGAAGGCGGAGTACGGT
GGCCTTGAAGGACTTAACGTATTGCGAATTACAACACCTGTATCCCAAAT
TGCGGACGAAGTTGGCCTCTCAGAAGCAGAGATCAACAGCATATTGAAGA
CCTCGCTTGAAACGATTTTCAAGGAACGAGAAAGGAGGCCAAGACCGCGT
ACAGACGACCTTTCTATAGCTTCTTGGATGGCTCTGGCAATCTCAGCATT
CATGAGAGCAGGGCGATCCCTGAATAGACCAGATTACATTGCCGTTGCTG
AGAAAGCAGCTAGTTTAATAAGACGATCGATGGTAATTCAAATTGATGAA
GTGTCAGACGCCATTTATCTGGCTCGTGCTTATCGTGGAAAGAGAGGAAC
AGTACAGGCACTTGCAGACGATTATACTTGCAGTATACAGGCCTTCCTCG
ACTGCTATGAGGTCACTGGAGATTTGGAACATCTACATTTTGCGCGACAG
CTACAAAACGCACTAGATACTCGCTTTTGGGTAGAAGGTGGATATTGTAA
TGCGGTGAGAGGCGACAAAGACATTCTGCTGAGAAGAGTTGAGGACTATG
ATGGTGCCGAGCCCGCAGCATCCAGTGTTGCTGTCCTTAACCTTATTCGG
ATGGCTTCTTTGTTTGGAGATGACACACTCTGGAGTCGGGCCAAATCTAT
CATAAATTCATTCAAGAAAACGTTTGAAAATAGCCCCCTCGCCATGCCAT
TTCTACTCTCATCTGCTCATCCTCTTGTCCAAGATATATCTCAGAGAGTT
GTGGTCGTCGGGAATAACGAAGAAGCTTCGAATTTACTGGACGTGTACTG
GTCGCAGGGTCTCGCCCGCCACATCGGCATGCTGCGGCTTCCATTGAAGA
AATGCTCAAAGCAACTTTTGCAGTACTTCTCCCCCGATCGGCAAGCTTTG
GGGCAGGATCTAAGGAACAGTACAGCGTTTGTTTGCATAGGTGGGGATTG
CTTCGAACCGACGAGTGACCTCGATCGATTTGTATGTGAGCTTCGACGAC
TAAGAATCAGCGAGTAG back to topCoding sequence (CDS) from alignment at tig00004390_pilon:1015531..1018047+ >Gchil6628.t1 ID=Gchil6628.t1|Name=Gchil6628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2517bp|location=Sequence derived from alignment at tig00004390_pilon:1015531..1018047+ (Gracilaria chilensis NLEC103_M9 male) ATGGTCCGGGTTCCGATCTCTTCCGAGAAGAATAAAGGTCTGATTGTTTC GGAAGCGTACATGCATTTCGGCCATTTCGGCCGTTCCAATTACTCAAGGG TCCATCCACCCTCTATACTACACATAAGTTTCGCCTATACCTCAATTTCG CGTTTACAGGCTCTCAGCGGCACAGGCCTTGGGAACCAGCTGAAGTCATC TGCCTTCTCTCCAATTTTCCTACGAAAGGATTGTCTGAAATGCACCCGCC ATAGGATCACGAAACCACTGCCAAGCTGTAACAGCACCGCGAATGGCTCA GATTTGTCAAGTGAATCCGTGCAATCTGGTCTTGTGGCCCGAGTTGCGCC GTTCACTTCACAAAAACCGAATTTCCTCATCTCCGAGACTAGTCGCTATC TTGCTGATTCCGCCTATGATCTGGTGCATTGGTATCCATGGGGTCACCAA GCGTTTGTGGCGGCTCGAAACGAGCAGAAGCCAATACTCTTGTCTTCTGG ATTTTTGAGTTGTCATATGTGCGATGTGATGTCTGACCATTTCTGCGATC CGGAAATTGCTTGTATTCTGAATGAGAGGTTCATATGTGTTAAAGTTGAT CGCGAAGAGCGCCCCGATGTCGACTCAGTGTACAACTCTTTTGTACAGGC CGTTACGGGAAGAACAGGGTGGCCTTTAACATGCTTTTTGACTCCTGGTC TCATTCCTTTCGTTGGCACTACATATCTTCCCAAAGAAAGGCTTTTGAAT GCCGTAAAGTCTATCGCCGACCGGTGGGAGACGAACCGTGAAAAGGTAGA GGCGGATGGAACAAAAGTTGTTGACGCCCTGCGCGACTTATTTGCGCGCA GAGAGATTACCTCCCAACCAACTGTCAACGTTGAAACCTTACAACAAGCC TTTGATGCTACAGTTGCGAGTTTTGACGTCGAAAACGGCGGCTTCGGATC TGCGCCCAAATTTCTACGTCCTTCCGTATTCGAATTTCTATTATCCGTTC ATCAGTCAGCCCAGTTTGATGAAGGTATTCGATGTGAAGCACTAGAAATG GTGTTTTACAGTTTGCGACTTATAGCTGGAGGAGGTATACACGACCATGT TGGGGGAGGGTTCTTCAGGTATTCACTAGATGCTTCATGGGAAGTACCAC ACTTCGAAAAGATTCTTCCGGACCAGGCCCAGCTTGCGATGACTTTTTTA CATGCATATCTGTTGTCAGGAGATCAAAAGTTTAGCGGTGTGGTATGCAA GACGTTGGATTTTGTCATGCGAGAAATGTGGGACGAAGATACTGGTGCCA TATACAGTGCCATTCACGCTGATTCAAAGCCCTTATACGACATTACCAAA ACATCTGCGGAAGGTGCGTTTTACACCTTTAGTTCCTTTGAGCTAATGCT GATCCTTGGCGAACCAGCAAGCACAATATTCCAAAAACGTTTCGGAGTCA CAGCAGCGGGTAATGTTTCAGAGTCAGCTGTTGCGAAGGCGGAGTACGGT GGCCTTGAAGGACTTAACGTATTGCGAATTACAACACCTGTATCCCAAAT TGCGGACGAAGTTGGCCTCTCAGAAGCAGAGATCAACAGCATATTGAAGA CCTCGCTTGAAACGATTTTCAAGGAACGAGAAAGGAGGCCAAGACCGCGT ACAGACGACCTTTCTATAGCTTCTTGGATGGCTCTGGCAATCTCAGCATT CATGAGAGCAGGGCGATCCCTGAATAGACCAGATTACATTGCCGTTGCTG AGAAAGCAGCTAGTTTAATAAGACGATCGATGGTAATTCAAATTGATGAA GTGTCAGACGCCATTTATCTGGCTCGTGCTTATCGTGGAAAGAGAGGAAC AGTACAGGCACTTGCAGACGATTATACTTGCAGTATACAGGCCTTCCTCG ACTGCTATGAGGTCACTGGAGATTTGGAACATCTACATTTTGCGCGACAG CTACAAAACGCACTAGATACTCGCTTTTGGGTAGAAGGTGGATATTGTAA TGCGGTGAGAGGCGACAAAGACATTCTGCTGAGAAGAGTTGAGGACTATG ATGGTGCCGAGCCCGCAGCATCCAGTGTTGCTGTCCTTAACCTTATTCGG ATGGCTTCTTTGTTTGGAGATGACACACTCTGGAGTCGGGCCAAATCTAT CATAAATTCATTCAAGAAAACGTTTGAAAATAGCCCCCTCGCCATGCCAT TTCTACTCTCATCTGCTCATCCTCTTGTCCAAGATATATCTCAGAGAGTT GTGGTCGTCGGGAATAACGAAGAAGCTTCGAATTTACTGGACGTGTACTG GTCGCAGGGTCTCGCCCGCCACATCGGCATGCTGCGGCTTCCATTGAAGA AATGCTCAAAGCAACTTTTGCAGTACTTCTCCCCCGATCGGCAAGCTTTG GGGCAGGATCTAAGGAACAGTACAGCGTTTGTTTGCATAGGTGGGGATTG CTTCGAACCGACGAGTGACCTCGATCGATTTGTATGTGAGCTTCGACGAC TAAGAATCAGCGAGTAG back to top
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