Gchil6622.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6622.t1
Unique NameGchil6622.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length239
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:898574..899290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702813.1
PFAMsAmidohydro_1,PNP_UDP_1,RabGAP-TBC
Max annot lvl2759|Eukaryota
KEGG rclassRC00477
KEGG koko:K12960
KEGG ReactionR09660
KEGG Pathwayko00270,ko01100,map00270,map01100
Evalue5.9e-53
EggNOG OGsCOG0005@1|root,COG0402@1|root,KOG3968@2759|Eukaryota,KOG3985@2759|Eukaryota
EC3.5.4.28,3.5.4.31
DescriptionS-methyl-5-thioadenosine phosphorylase activity
COG categoryF
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6622Gchil6622Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 898574..899290 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6622.t1.stop1Gchil6622.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 898574..898576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6622.t1.CDS1Gchil6622.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 898574..899290 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6622.t1.exon1Gchil6622.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 898574..899290 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6622.t1.start1Gchil6622.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 899288..899290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6622.t1Gchil6622.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 898574..899290 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6622.t1 ID=Gchil6622.t1|Name=Gchil6622.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=239bp
MFSLLQSKTIATPHGDVIVFCDLERPDSIVFVQRHHADGAAGKDVYRPPH
LINFRANMAAMAAEGVDRIVSVCCVGSLSKEIEIGTVVIPDDYFYLFGPS
VSYYDDARAHIVPGIDTDLRAKLVEVLHEDEVLTLRKAGAVYVQTVGPRF
ETKAEVRFLSSLGDIIGMTGATEATLAKELGISYVILAMVDNMANGLTET
ELSKEQFNANVTKNLSVVEQCVASVLKRFQPESGGFVS*
back to top

spliced messenger RNA

>Gchil6622.t1 ID=Gchil6622.t1|Name=Gchil6622.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00004390_pilon:898574..899290- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTCGTTGCTGCAGTCAAAAACAATTGCCACACCACATGGAGATGT
CATTGTTTTCTGTGATCTTGAACGTCCTGACTCAATTGTTTTCGTTCAAC
GTCACCACGCAGATGGAGCCGCTGGAAAAGATGTCTACCGACCGCCGCAC
CTTATCAATTTTCGAGCAAATATGGCGGCTATGGCCGCAGAAGGAGTTGA
TAGGATCGTTTCCGTCTGCTGCGTTGGTTCTCTTTCGAAAGAAATTGAAA
TTGGCACTGTAGTGATTCCTGATGATTATTTTTACTTGTTCGGTCCGTCC
GTCTCGTATTACGATGATGCAAGAGCACATATTGTCCCAGGCATTGATAC
GGACCTTAGGGCGAAACTGGTAGAAGTACTACATGAGGACGAGGTTTTGA
CGTTGCGAAAAGCCGGCGCTGTTTACGTTCAAACCGTCGGTCCCCGATTT
GAAACTAAAGCAGAAGTTCGGTTTCTTTCATCTTTAGGGGATATAATCGG
CATGACTGGTGCAACAGAAGCAACTCTTGCGAAGGAGTTGGGAATTTCGT
ATGTTATTCTGGCAATGGTTGACAATATGGCGAACGGATTAACGGAGACC
GAGTTATCCAAGGAGCAGTTCAATGCCAATGTTACGAAGAATTTGAGCGT
CGTTGAGCAATGCGTGGCCTCTGTGCTTAAACGCTTCCAGCCAGAAAGTG
GTGGTTTTGTTTCTTAA
back to top

protein sequence of Gchil6622.t1

>Gchil6622.t1 ID=Gchil6622.t1|Name=Gchil6622.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=239bp
MFSLLQSKTIATPHGDVIVFCDLERPDSIVFVQRHHADGAAGKDVYRPPH
LINFRANMAAMAAEGVDRIVSVCCVGSLSKEIEIGTVVIPDDYFYLFGPS
VSYYDDARAHIVPGIDTDLRAKLVEVLHEDEVLTLRKAGAVYVQTVGPRF
ETKAEVRFLSSLGDIIGMTGATEATLAKELGISYVILAMVDNMANGLTET
ELSKEQFNANVTKNLSVVEQCVASVLKRFQPESGGFVS*
back to top

mRNA from alignment at tig00004390_pilon:898574..899290-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6622.t1 ID=Gchil6622.t1|Name=Gchil6622.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp|location=Sequence derived from alignment at tig00004390_pilon:898574..899290- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTCGTTGCTGCAGTCAAAAACAATTGCCACACCACATGGAGATGT
CATTGTTTTCTGTGATCTTGAACGTCCTGACTCAATTGTTTTCGTTCAAC
GTCACCACGCAGATGGAGCCGCTGGAAAAGATGTCTACCGACCGCCGCAC
CTTATCAATTTTCGAGCAAATATGGCGGCTATGGCCGCAGAAGGAGTTGA
TAGGATCGTTTCCGTCTGCTGCGTTGGTTCTCTTTCGAAAGAAATTGAAA
TTGGCACTGTAGTGATTCCTGATGATTATTTTTACTTGTTCGGTCCGTCC
GTCTCGTATTACGATGATGCAAGAGCACATATTGTCCCAGGCATTGATAC
GGACCTTAGGGCGAAACTGGTAGAAGTACTACATGAGGACGAGGTTTTGA
CGTTGCGAAAAGCCGGCGCTGTTTACGTTCAAACCGTCGGTCCCCGATTT
GAAACTAAAGCAGAAGTTCGGTTTCTTTCATCTTTAGGGGATATAATCGG
CATGACTGGTGCAACAGAAGCAACTCTTGCGAAGGAGTTGGGAATTTCGT
ATGTTATTCTGGCAATGGTTGACAATATGGCGAACGGATTAACGGAGACC
GAGTTATCCAAGGAGCAGTTCAATGCCAATGTTACGAAGAATTTGAGCGT
CGTTGAGCAATGCGTGGCCTCTGTGCTTAAACGCTTCCAGCCAGAAAGTG
GTGGTTTTGTTTCTTAA
back to top

Coding sequence (CDS) from alignment at tig00004390_pilon:898574..899290-

>Gchil6622.t1 ID=Gchil6622.t1|Name=Gchil6622.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=717bp|location=Sequence derived from alignment at tig00004390_pilon:898574..899290- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCTCGTTGCTGCAGTCAAAAACAATTGCCACACCACATGGAGATGT
CATTGTTTTCTGTGATCTTGAACGTCCTGACTCAATTGTTTTCGTTCAAC
GTCACCACGCAGATGGAGCCGCTGGAAAAGATGTCTACCGACCGCCGCAC
CTTATCAATTTTCGAGCAAATATGGCGGCTATGGCCGCAGAAGGAGTTGA
TAGGATCGTTTCCGTCTGCTGCGTTGGTTCTCTTTCGAAAGAAATTGAAA
TTGGCACTGTAGTGATTCCTGATGATTATTTTTACTTGTTCGGTCCGTCC
GTCTCGTATTACGATGATGCAAGAGCACATATTGTCCCAGGCATTGATAC
GGACCTTAGGGCGAAACTGGTAGAAGTACTACATGAGGACGAGGTTTTGA
CGTTGCGAAAAGCCGGCGCTGTTTACGTTCAAACCGTCGGTCCCCGATTT
GAAACTAAAGCAGAAGTTCGGTTTCTTTCATCTTTAGGGGATATAATCGG
CATGACTGGTGCAACAGAAGCAACTCTTGCGAAGGAGTTGGGAATTTCGT
ATGTTATTCTGGCAATGGTTGACAATATGGCGAACGGATTAACGGAGACC
GAGTTATCCAAGGAGCAGTTCAATGCCAATGTTACGAAGAATTTGAGCGT
CGTTGAGCAATGCGTGGCCTCTGTGCTTAAACGCTTCCAGCCAGAAAGTG
GTGGTTTTGTTTCTTAA
back to top