Gchil660.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil660.t1
Unique NameGchil660.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004380_piloncontigtig00004380_pilon:775433..776410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMP091CT
Preferred nameRNMT
PFAMsPox_MCEL
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00336
KEGG koko:K00565,ko:K14815
KEGG ReactionR03805
KEGG Pathwayko03015,map03015
GOsGO:0000428,GO:0001510,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004482,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005845,GO:0006139,GO:0006351,GO:0006366,GO:0006370,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008174,GO:0008757,GO:0009058,GO:0009059,GO:0009451,GO:0009452,GO:0009987,GO:0010033,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016591,GO:0016740,GO:0016741,GO:0018130,GO:0019438,GO:0030880,GO:0031533,GO:0031974,GO:0031981,GO:0032259,GO:0032774,GO:0032991,GO:0034097,GO:0034518,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035690,GO:0036260,GO:0036265,GO:0042221,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043235,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0070693,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0080009,GO:0090304,GO:0097159,GO:0097659,GO:0106005,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990823,GO:1990830
Evalue1.87e-98
EggNOG OGsKOG1975@1|root,KOG1975@2759|Eukaryota
EC2.1.1.56
DescriptionmRNA (guanine-N7-)-methyltransferase activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03009,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil660Gchil660Gracilaria chilensis NLEC103_M9 malegenetig00004380_pilon 775433..776410 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil660.t1.start1Gchil660.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004380_pilon 775433..775435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil660.t1.CDS1Gchil660.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004380_pilon 775433..776410 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil660.t1.exon1Gchil660.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004380_pilon 775433..776410 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil660.t1.stop1Gchil660.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004380_pilon 776408..776410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil660.t1Gchil660.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004380_pilon 775433..776410 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil660.t1 ID=Gchil660.t1|Name=Gchil660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=326bp
MDNPQVTDHYNARPLETRHSRKQSPIFQMRKFNNWLKSVLIYLHTRPGYS
VLDLCCGKGGDLHKWSQAGAATYVACDTAQVSVQECANRYNGMGRAPFRP
SLLVGDCFQVNVDDYIPRDIMFDVVSCQFAIHYAFESESRVRNLVKNVTD
RLKPGGFFIGTTVDANVLVRKLRAVDDMAVSNSVYEVRLDPAFKEKRFPK
NNPYGVRYNFSLDQSVEDCPEYLVHFPSFERLAAEYGLELVLLSNFHDFF
VEFTKDEYPEYLNLLFSMNVLDETGSIEPNQWDAIYLYTAFAFKRKGEAN
PGLQKNQVRPTNIEPIGAHEIIMMR*
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spliced messenger RNA

>Gchil660.t1 ID=Gchil660.t1|Name=Gchil660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00004380_pilon:775433..776410+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAACCCGCAGGTCACCGATCATTACAATGCACGCCCGCTGGAGAC
GCGTCATTCGCGCAAACAGTCGCCAATCTTTCAGATGCGAAAGTTCAACA
ACTGGCTCAAATCCGTACTCATTTACTTGCATACGCGCCCGGGCTACTCT
GTACTGGATCTCTGTTGCGGCAAAGGCGGAGACCTTCATAAATGGTCTCA
GGCAGGCGCTGCTACCTATGTCGCCTGCGATACAGCTCAGGTTTCGGTTC
AGGAGTGTGCCAATAGATACAACGGCATGGGTCGCGCTCCATTTAGACCT
TCTCTGCTCGTCGGCGATTGCTTTCAGGTAAACGTAGACGATTACATTCC
CCGAGACATAATGTTTGACGTTGTGAGCTGCCAGTTTGCAATTCACTACG
CGTTCGAGAGCGAATCGCGTGTGCGAAACTTGGTGAAGAATGTCACGGAT
CGCCTTAAACCTGGCGGTTTCTTTATCGGTACTACCGTTGATGCTAATGT
GTTAGTGCGGAAATTGCGCGCAGTGGATGATATGGCCGTGTCGAACAGTG
TGTATGAGGTACGACTTGATCCTGCTTTCAAAGAAAAGCGCTTTCCGAAA
AACAACCCGTACGGAGTTCGCTATAATTTCAGTCTTGATCAAAGCGTCGA
AGACTGCCCTGAGTATCTTGTTCATTTTCCAAGTTTTGAGCGACTAGCTG
CAGAATATGGTCTTGAACTAGTTCTCTTGTCAAATTTCCACGACTTTTTC
GTTGAGTTTACCAAAGACGAGTACCCGGAATACCTCAACCTGCTCTTCTC
TATGAATGTTCTCGATGAAACCGGTTCTATTGAACCGAATCAGTGGGATG
CGATCTATCTATACACCGCGTTTGCATTCAAGAGAAAAGGTGAGGCCAAC
CCTGGACTTCAAAAAAACCAAGTCAGGCCCACAAACATTGAGCCCATTGG
GGCCCACGAGATAATTATGATGAGATGA
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protein sequence of Gchil660.t1

>Gchil660.t1 ID=Gchil660.t1|Name=Gchil660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=326bp
MDNPQVTDHYNARPLETRHSRKQSPIFQMRKFNNWLKSVLIYLHTRPGYS
VLDLCCGKGGDLHKWSQAGAATYVACDTAQVSVQECANRYNGMGRAPFRP
SLLVGDCFQVNVDDYIPRDIMFDVVSCQFAIHYAFESESRVRNLVKNVTD
RLKPGGFFIGTTVDANVLVRKLRAVDDMAVSNSVYEVRLDPAFKEKRFPK
NNPYGVRYNFSLDQSVEDCPEYLVHFPSFERLAAEYGLELVLLSNFHDFF
VEFTKDEYPEYLNLLFSMNVLDETGSIEPNQWDAIYLYTAFAFKRKGEAN
PGLQKNQVRPTNIEPIGAHEIIMMR*
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mRNA from alignment at tig00004380_pilon:775433..776410+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil660.t1 ID=Gchil660.t1|Name=Gchil660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00004380_pilon:775433..776410+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATAACCCGCAGGTCACCGATCATTACAATGCACGCCCGCTGGAGAC
GCGTCATTCGCGCAAACAGTCGCCAATCTTTCAGATGCGAAAGTTCAACA
ACTGGCTCAAATCCGTACTCATTTACTTGCATACGCGCCCGGGCTACTCT
GTACTGGATCTCTGTTGCGGCAAAGGCGGAGACCTTCATAAATGGTCTCA
GGCAGGCGCTGCTACCTATGTCGCCTGCGATACAGCTCAGGTTTCGGTTC
AGGAGTGTGCCAATAGATACAACGGCATGGGTCGCGCTCCATTTAGACCT
TCTCTGCTCGTCGGCGATTGCTTTCAGGTAAACGTAGACGATTACATTCC
CCGAGACATAATGTTTGACGTTGTGAGCTGCCAGTTTGCAATTCACTACG
CGTTCGAGAGCGAATCGCGTGTGCGAAACTTGGTGAAGAATGTCACGGAT
CGCCTTAAACCTGGCGGTTTCTTTATCGGTACTACCGTTGATGCTAATGT
GTTAGTGCGGAAATTGCGCGCAGTGGATGATATGGCCGTGTCGAACAGTG
TGTATGAGGTACGACTTGATCCTGCTTTCAAAGAAAAGCGCTTTCCGAAA
AACAACCCGTACGGAGTTCGCTATAATTTCAGTCTTGATCAAAGCGTCGA
AGACTGCCCTGAGTATCTTGTTCATTTTCCAAGTTTTGAGCGACTAGCTG
CAGAATATGGTCTTGAACTAGTTCTCTTGTCAAATTTCCACGACTTTTTC
GTTGAGTTTACCAAAGACGAGTACCCGGAATACCTCAACCTGCTCTTCTC
TATGAATGTTCTCGATGAAACCGGTTCTATTGAACCGAATCAGTGGGATG
CGATCTATCTATACACCGCGTTTGCATTCAAGAGAAAAGGTGAGGCCAAC
CCTGGACTTCAAAAAAACCAAGTCAGGCCCACAAACATTGAGCCCATTGG
GGCCCACGAGATAATTATGATGAGATGA
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Coding sequence (CDS) from alignment at tig00004380_pilon:775433..776410+

>Gchil660.t1 ID=Gchil660.t1|Name=Gchil660.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00004380_pilon:775433..776410+ (Gracilaria chilensis NLEC103_M9 male)
ATGGATAACCCGCAGGTCACCGATCATTACAATGCACGCCCGCTGGAGAC
GCGTCATTCGCGCAAACAGTCGCCAATCTTTCAGATGCGAAAGTTCAACA
ACTGGCTCAAATCCGTACTCATTTACTTGCATACGCGCCCGGGCTACTCT
GTACTGGATCTCTGTTGCGGCAAAGGCGGAGACCTTCATAAATGGTCTCA
GGCAGGCGCTGCTACCTATGTCGCCTGCGATACAGCTCAGGTTTCGGTTC
AGGAGTGTGCCAATAGATACAACGGCATGGGTCGCGCTCCATTTAGACCT
TCTCTGCTCGTCGGCGATTGCTTTCAGGTAAACGTAGACGATTACATTCC
CCGAGACATAATGTTTGACGTTGTGAGCTGCCAGTTTGCAATTCACTACG
CGTTCGAGAGCGAATCGCGTGTGCGAAACTTGGTGAAGAATGTCACGGAT
CGCCTTAAACCTGGCGGTTTCTTTATCGGTACTACCGTTGATGCTAATGT
GTTAGTGCGGAAATTGCGCGCAGTGGATGATATGGCCGTGTCGAACAGTG
TGTATGAGGTACGACTTGATCCTGCTTTCAAAGAAAAGCGCTTTCCGAAA
AACAACCCGTACGGAGTTCGCTATAATTTCAGTCTTGATCAAAGCGTCGA
AGACTGCCCTGAGTATCTTGTTCATTTTCCAAGTTTTGAGCGACTAGCTG
CAGAATATGGTCTTGAACTAGTTCTCTTGTCAAATTTCCACGACTTTTTC
GTTGAGTTTACCAAAGACGAGTACCCGGAATACCTCAACCTGCTCTTCTC
TATGAATGTTCTCGATGAAACCGGTTCTATTGAACCGAATCAGTGGGATG
CGATCTATCTATACACCGCGTTTGCATTCAAGAGAAAAGGTGAGGCCAAC
CCTGGACTTCAAAAAAACCAAGTCAGGCCCACAAACATTGAGCCCATTGG
GGCCCACGAGATAATTATGATGAGATGA
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