Gchil6598.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6598.t1
Unique NameGchil6598.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:746874..747902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2JU05
Preferred nameTAD3
PFAMsSET,dCMP_cyt_deam_1
Max annot lvl4751|Fungi
KEGG koko:K07117,ko:K15442
GOsGO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0071704,GO:0090304,GO:1901360,GO:1902494
Evalue5.63e-31
EggNOG OGsCOG0590@1|root,KOG2771@2759|Eukaryota,38EK3@33154|Opisthokonta,3NW8T@4751|Fungi,1GX06@112252|Fungi incertae sedis
DescriptionCytidine and deoxycytidylate deaminase zinc-binding region
COG categoryA
BRITEko00000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6598Gchil6598Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 746874..747902 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6598.t1.start1Gchil6598.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 746874..746876 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6598.t1.CDS1Gchil6598.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 746874..747902 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6598.t1.exon1Gchil6598.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 746874..747902 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6598.t1.stop1Gchil6598.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 747900..747902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6598.t1Gchil6598.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 746874..747902 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6598.t1 ID=Gchil6598.t1|Name=Gchil6598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=343bp
MPKFRSNENSGADQEDKLSKILRRHVRQVGTRGAENGPRQPQTCAVLTSP
IDPKQACKLIPLLSEHFPLNDGLSHLKRVRRSNSGKIQRGFQLEVVLCRE
EVWEYRTKDTRHVLQSFNLQPEKCMVPATAPLSRDELQQWSELWPLTYRA
GKHSFKPPSSNDLKDMYARIRSTVKRSQEIQQSHCAVMAELIYPVTGKVV
AFAQDQSYRKANISHDSTTSNKRLAHAVMNCLASFASAHTPVTNVKSTVD
AVHIEERKLPQAGCLPSDQYLCTGLDCYVTREPCVMCAMALVHSRVRRVV
FTAFNDENVGGFSQVKIHNEPALNHRLEAFIVPLKQIDSCLK*
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spliced messenger RNA

>Gchil6598.t1 ID=Gchil6598.t1|Name=Gchil6598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00004390_pilon:746874..747902+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAAGTTCAGGTCTAACGAGAACTCTGGAGCAGATCAGGAAGATAA
ACTCTCAAAGATCCTCCGAAGGCATGTTAGACAGGTGGGCACAAGAGGCG
CCGAAAACGGTCCAAGGCAACCACAGACATGTGCAGTACTCACTTCTCCG
ATTGATCCAAAACAGGCATGCAAGCTAATACCGTTGTTGTCTGAGCATTT
TCCGCTCAATGACGGACTTTCCCATCTAAAACGAGTAAGAAGATCCAATT
CTGGAAAGATCCAAAGAGGATTCCAATTGGAAGTGGTGCTTTGTCGCGAA
GAAGTATGGGAATACAGAACTAAAGACACAAGACACGTGCTTCAATCTTT
TAATCTGCAACCAGAAAAGTGCATGGTTCCGGCAACAGCTCCTCTCTCGC
GTGATGAACTCCAGCAATGGAGCGAGCTTTGGCCACTAACGTATAGAGCA
GGAAAGCACTCCTTCAAACCACCGTCGTCTAATGACCTTAAGGACATGTA
CGCTCGAATTCGCAGTACTGTCAAACGAAGTCAAGAAATTCAGCAATCTC
ACTGCGCAGTGATGGCTGAATTGATTTATCCGGTAACAGGAAAAGTTGTA
GCTTTCGCCCAGGATCAGTCTTATCGGAAAGCAAACATTTCGCACGATTC
CACCACGTCTAATAAGCGTTTGGCACATGCTGTTATGAATTGCCTTGCGT
CTTTTGCTTCGGCACACACCCCCGTTACCAACGTGAAAAGTACAGTCGAT
GCAGTTCATATAGAGGAAAGGAAATTACCACAGGCTGGCTGCCTCCCATC
AGACCAATATCTATGTACTGGATTGGACTGCTACGTAACTAGGGAACCTT
GCGTCATGTGTGCAATGGCACTAGTACATTCAAGAGTTCGGCGGGTGGTT
TTCACAGCTTTCAATGACGAAAATGTCGGCGGGTTCTCACAGGTAAAGAT
TCACAACGAACCTGCTTTAAACCATCGCTTGGAAGCCTTCATAGTTCCAT
TGAAACAGATAGACTCTTGTCTGAAATGA
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protein sequence of Gchil6598.t1

>Gchil6598.t1 ID=Gchil6598.t1|Name=Gchil6598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=343bp
MPKFRSNENSGADQEDKLSKILRRHVRQVGTRGAENGPRQPQTCAVLTSP
IDPKQACKLIPLLSEHFPLNDGLSHLKRVRRSNSGKIQRGFQLEVVLCRE
EVWEYRTKDTRHVLQSFNLQPEKCMVPATAPLSRDELQQWSELWPLTYRA
GKHSFKPPSSNDLKDMYARIRSTVKRSQEIQQSHCAVMAELIYPVTGKVV
AFAQDQSYRKANISHDSTTSNKRLAHAVMNCLASFASAHTPVTNVKSTVD
AVHIEERKLPQAGCLPSDQYLCTGLDCYVTREPCVMCAMALVHSRVRRVV
FTAFNDENVGGFSQVKIHNEPALNHRLEAFIVPLKQIDSCLK*
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mRNA from alignment at tig00004390_pilon:746874..747902+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6598.t1 ID=Gchil6598.t1|Name=Gchil6598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00004390_pilon:746874..747902+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTAAGTTCAGGTCTAACGAGAACTCTGGAGCAGATCAGGAAGATAA
ACTCTCAAAGATCCTCCGAAGGCATGTTAGACAGGTGGGCACAAGAGGCG
CCGAAAACGGTCCAAGGCAACCACAGACATGTGCAGTACTCACTTCTCCG
ATTGATCCAAAACAGGCATGCAAGCTAATACCGTTGTTGTCTGAGCATTT
TCCGCTCAATGACGGACTTTCCCATCTAAAACGAGTAAGAAGATCCAATT
CTGGAAAGATCCAAAGAGGATTCCAATTGGAAGTGGTGCTTTGTCGCGAA
GAAGTATGGGAATACAGAACTAAAGACACAAGACACGTGCTTCAATCTTT
TAATCTGCAACCAGAAAAGTGCATGGTTCCGGCAACAGCTCCTCTCTCGC
GTGATGAACTCCAGCAATGGAGCGAGCTTTGGCCACTAACGTATAGAGCA
GGAAAGCACTCCTTCAAACCACCGTCGTCTAATGACCTTAAGGACATGTA
CGCTCGAATTCGCAGTACTGTCAAACGAAGTCAAGAAATTCAGCAATCTC
ACTGCGCAGTGATGGCTGAATTGATTTATCCGGTAACAGGAAAAGTTGTA
GCTTTCGCCCAGGATCAGTCTTATCGGAAAGCAAACATTTCGCACGATTC
CACCACGTCTAATAAGCGTTTGGCACATGCTGTTATGAATTGCCTTGCGT
CTTTTGCTTCGGCACACACCCCCGTTACCAACGTGAAAAGTACAGTCGAT
GCAGTTCATATAGAGGAAAGGAAATTACCACAGGCTGGCTGCCTCCCATC
AGACCAATATCTATGTACTGGATTGGACTGCTACGTAACTAGGGAACCTT
GCGTCATGTGTGCAATGGCACTAGTACATTCAAGAGTTCGGCGGGTGGTT
TTCACAGCTTTCAATGACGAAAATGTCGGCGGGTTCTCACAGGTAAAGAT
TCACAACGAACCTGCTTTAAACCATCGCTTGGAAGCCTTCATAGTTCCAT
TGAAACAGATAGACTCTTGTCTGAAATGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:746874..747902+

>Gchil6598.t1 ID=Gchil6598.t1|Name=Gchil6598.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00004390_pilon:746874..747902+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCTAAGTTCAGGTCTAACGAGAACTCTGGAGCAGATCAGGAAGATAA
ACTCTCAAAGATCCTCCGAAGGCATGTTAGACAGGTGGGCACAAGAGGCG
CCGAAAACGGTCCAAGGCAACCACAGACATGTGCAGTACTCACTTCTCCG
ATTGATCCAAAACAGGCATGCAAGCTAATACCGTTGTTGTCTGAGCATTT
TCCGCTCAATGACGGACTTTCCCATCTAAAACGAGTAAGAAGATCCAATT
CTGGAAAGATCCAAAGAGGATTCCAATTGGAAGTGGTGCTTTGTCGCGAA
GAAGTATGGGAATACAGAACTAAAGACACAAGACACGTGCTTCAATCTTT
TAATCTGCAACCAGAAAAGTGCATGGTTCCGGCAACAGCTCCTCTCTCGC
GTGATGAACTCCAGCAATGGAGCGAGCTTTGGCCACTAACGTATAGAGCA
GGAAAGCACTCCTTCAAACCACCGTCGTCTAATGACCTTAAGGACATGTA
CGCTCGAATTCGCAGTACTGTCAAACGAAGTCAAGAAATTCAGCAATCTC
ACTGCGCAGTGATGGCTGAATTGATTTATCCGGTAACAGGAAAAGTTGTA
GCTTTCGCCCAGGATCAGTCTTATCGGAAAGCAAACATTTCGCACGATTC
CACCACGTCTAATAAGCGTTTGGCACATGCTGTTATGAATTGCCTTGCGT
CTTTTGCTTCGGCACACACCCCCGTTACCAACGTGAAAAGTACAGTCGAT
GCAGTTCATATAGAGGAAAGGAAATTACCACAGGCTGGCTGCCTCCCATC
AGACCAATATCTATGTACTGGATTGGACTGCTACGTAACTAGGGAACCTT
GCGTCATGTGTGCAATGGCACTAGTACATTCAAGAGTTCGGCGGGTGGTT
TTCACAGCTTTCAATGACGAAAATGTCGGCGGGTTCTCACAGGTAAAGAT
TCACAACGAACCTGCTTTAAACCATCGCTTGGAAGCCTTCATAGTTCCAT
TGAAACAGATAGACTCTTGTCTGAAATGA
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