Gchil6592.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6592.t1
Unique NameGchil6592.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length305
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:717894..718911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708853.1
Preferred namePSMD7
PFAMsJAB,MitMem_reg
Max annot lvl2759|Eukaryota
KEGG koko:K03038,ko:K08825,ko:K20306
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005838,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009896,GO:0009965,GO:0009987,GO:0010016,GO:0010154,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022414,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0030425,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0036477,GO:0042119,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0046983,GO:0048316,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051233,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061458,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072686,GO:0090068,GO:0097447,GO:0097458,GO:0097708,GO:0099402,GO:0099503,GO:0101002,GO:0120025,GO:0120038,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905392,GO:1905818,GO:1905820,GO:1990023,GO:2001252
Evalue5.23e-126
EggNOG OGsCOG1310@1|root,KOG1556@2759|Eukaryota
EC2.7.12.1
Descriptionproteasome-mediated ubiquitin-dependent protein catabolic process
COG categoryZ
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03051,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6592Gchil6592Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 717894..718911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6592.t1Gchil6592.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 717894..718911 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6592.t1.stop1Gchil6592.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 717894..717896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6592.t1.CDS1Gchil6592.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 717894..718713 -
Gchil6592.t1.CDS2Gchil6592.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 718817..718911 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6592.t1.exon1Gchil6592.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 717894..718713 -
Gchil6592.t1.exon2Gchil6592.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 718817..718911 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6592.t1.intron1Gchil6592.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 718714..718816 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6592.t1.start1Gchil6592.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 718909..718911 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6592.t1 ID=Gchil6592.t1|Name=Gchil6592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=305bp
MAPVIPTSVAVHPLVLLGVIDHYNRVCEDTKKRAVGVLLGHVAKGKVSCT
NCFAVPFEEDEKDPSVWFLDHNFLENMMGMFRKVNARERLVGWYSTGPKI
HTGDLDINELIRSYCPNPVLVIVDVKPKDLGLPTEAYLSVEEAQKDGAIT
KTFEHLPSEIDATDAEEVGVGHLLRDIKDSSISNLTSDISAKSAALMSLG
DRLAELKTYLEDVAATKLPVNNEIMYRMQDVFSLLPSLDVPKLLRGFHVK
NNDMMLVLYVSALIRSIIALHDLIDNKIMLKATEKKAAEAAVITSTANGT
MAAK*
back to top

spliced messenger RNA

>Gchil6592.t1 ID=Gchil6592.t1|Name=Gchil6592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00004390_pilon:717894..718911- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCGTAATTCCAACGTCTGTGGCCGTCCATCCTCTGGTTCTACT
GGGAGTGATTGACCATTACAACAGAGTATGCGAGGACACTAAAAAACGAG
CAGTTGGCGTGCTACTAGGGCATGTCGCCAAGGGAAAAGTGAGTTGTACA
AACTGTTTTGCAGTTCCTTTTGAGGAAGACGAAAAGGATCCATCTGTATG
GTTTCTGGATCACAATTTCCTTGAGAACATGATGGGCATGTTTCGAAAAG
TGAACGCGCGTGAACGATTAGTCGGATGGTACTCAACTGGGCCAAAGATC
CATACCGGCGATCTTGACATCAATGAGCTCATCCGATCGTATTGCCCAAA
TCCCGTACTCGTTATTGTGGACGTGAAACCCAAAGATCTTGGATTGCCGA
CTGAAGCGTATCTCTCCGTAGAAGAAGCTCAAAAAGACGGCGCGATTACT
AAGACTTTTGAACATCTTCCCAGTGAAATTGACGCAACTGATGCGGAGGA
AGTGGGCGTCGGACATTTGCTGCGCGATATCAAGGACTCGTCGATTTCAA
ATCTCACGAGCGACATCTCCGCAAAGTCTGCGGCGCTTATGTCTCTCGGT
GATCGTCTTGCTGAGTTGAAGACATACCTCGAGGACGTGGCAGCGACGAA
ACTCCCGGTGAATAACGAGATCATGTACAGAATGCAGGATGTGTTCAGCT
TACTGCCGAGCCTCGATGTTCCGAAATTATTGAGAGGTTTCCATGTCAAG
AACAATGATATGATGCTGGTGCTTTATGTTTCTGCCCTAATACGATCTAT
CATCGCACTGCACGACTTGATTGACAACAAAATTATGCTCAAGGCGACCG
AAAAGAAAGCTGCCGAGGCGGCTGTCATCACATCAACAGCGAATGGTACA
ATGGCAGCTAAATAA
back to top

protein sequence of Gchil6592.t1

>Gchil6592.t1 ID=Gchil6592.t1|Name=Gchil6592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=305bp
MAPVIPTSVAVHPLVLLGVIDHYNRVCEDTKKRAVGVLLGHVAKGKVSCT
NCFAVPFEEDEKDPSVWFLDHNFLENMMGMFRKVNARERLVGWYSTGPKI
HTGDLDINELIRSYCPNPVLVIVDVKPKDLGLPTEAYLSVEEAQKDGAIT
KTFEHLPSEIDATDAEEVGVGHLLRDIKDSSISNLTSDISAKSAALMSLG
DRLAELKTYLEDVAATKLPVNNEIMYRMQDVFSLLPSLDVPKLLRGFHVK
NNDMMLVLYVSALIRSIIALHDLIDNKIMLKATEKKAAEAAVITSTANGT
MAAK*
back to top

mRNA from alignment at tig00004390_pilon:717894..718911-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6592.t1 ID=Gchil6592.t1|Name=Gchil6592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1018bp|location=Sequence derived from alignment at tig00004390_pilon:717894..718911- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCCGTAATTCCAACGTCTGTGGCCGTCCATCCTCTGGTTCTACT
GGGAGTGATTGACCATTACAACAGAGTATGCGAGGACACTAAAAAGTAAG
TATCCCGAATGAAGCATCTCTTCTGCGCGCACGTCCATCTGCACGTAATC
TAACGCGCACGACTCATTATCCGCATCTCTGCGATATTTCAATGTCAGAC
GAGCAGTTGGCGTGCTACTAGGGCATGTCGCCAAGGGAAAAGTGAGTTGT
ACAAACTGTTTTGCAGTTCCTTTTGAGGAAGACGAAAAGGATCCATCTGT
ATGGTTTCTGGATCACAATTTCCTTGAGAACATGATGGGCATGTTTCGAA
AAGTGAACGCGCGTGAACGATTAGTCGGATGGTACTCAACTGGGCCAAAG
ATCCATACCGGCGATCTTGACATCAATGAGCTCATCCGATCGTATTGCCC
AAATCCCGTACTCGTTATTGTGGACGTGAAACCCAAAGATCTTGGATTGC
CGACTGAAGCGTATCTCTCCGTAGAAGAAGCTCAAAAAGACGGCGCGATT
ACTAAGACTTTTGAACATCTTCCCAGTGAAATTGACGCAACTGATGCGGA
GGAAGTGGGCGTCGGACATTTGCTGCGCGATATCAAGGACTCGTCGATTT
CAAATCTCACGAGCGACATCTCCGCAAAGTCTGCGGCGCTTATGTCTCTC
GGTGATCGTCTTGCTGAGTTGAAGACATACCTCGAGGACGTGGCAGCGAC
GAAACTCCCGGTGAATAACGAGATCATGTACAGAATGCAGGATGTGTTCA
GCTTACTGCCGAGCCTCGATGTTCCGAAATTATTGAGAGGTTTCCATGTC
AAGAACAATGATATGATGCTGGTGCTTTATGTTTCTGCCCTAATACGATC
TATCATCGCACTGCACGACTTGATTGACAACAAAATTATGCTCAAGGCGA
CCGAAAAGAAAGCTGCCGAGGCGGCTGTCATCACATCAACAGCGAATGGT
ACAATGGCAGCTAAATAA
back to top

Coding sequence (CDS) from alignment at tig00004390_pilon:717894..718911-

>Gchil6592.t1 ID=Gchil6592.t1|Name=Gchil6592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00004390_pilon:717894..718911- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCCGTAATTCCAACGTCTGTGGCCGTCCATCCTCTGGTTCTACT
GGGAGTGATTGACCATTACAACAGAGTATGCGAGGACACTAAAAAACGAG
CAGTTGGCGTGCTACTAGGGCATGTCGCCAAGGGAAAAGTGAGTTGTACA
AACTGTTTTGCAGTTCCTTTTGAGGAAGACGAAAAGGATCCATCTGTATG
GTTTCTGGATCACAATTTCCTTGAGAACATGATGGGCATGTTTCGAAAAG
TGAACGCGCGTGAACGATTAGTCGGATGGTACTCAACTGGGCCAAAGATC
CATACCGGCGATCTTGACATCAATGAGCTCATCCGATCGTATTGCCCAAA
TCCCGTACTCGTTATTGTGGACGTGAAACCCAAAGATCTTGGATTGCCGA
CTGAAGCGTATCTCTCCGTAGAAGAAGCTCAAAAAGACGGCGCGATTACT
AAGACTTTTGAACATCTTCCCAGTGAAATTGACGCAACTGATGCGGAGGA
AGTGGGCGTCGGACATTTGCTGCGCGATATCAAGGACTCGTCGATTTCAA
ATCTCACGAGCGACATCTCCGCAAAGTCTGCGGCGCTTATGTCTCTCGGT
GATCGTCTTGCTGAGTTGAAGACATACCTCGAGGACGTGGCAGCGACGAA
ACTCCCGGTGAATAACGAGATCATGTACAGAATGCAGGATGTGTTCAGCT
TACTGCCGAGCCTCGATGTTCCGAAATTATTGAGAGGTTTCCATGTCAAG
AACAATGATATGATGCTGGTGCTTTATGTTTCTGCCCTAATACGATCTAT
CATCGCACTGCACGACTTGATTGACAACAAAATTATGCTCAAGGCGACCG
AAAAGAAAGCTGCCGAGGCGGCTGTCATCACATCAACAGCGAATGGTACA
ATGGCAGCTAAATAA
back to top