Gchil6589.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6589.t1
Unique NameGchil6589.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length422
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:709928..711193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703846.1
Max annot lvl2759|Eukaryota
Evalue7.05e-21
EggNOG OGs28PB3@1|root,2QVYF@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6589Gchil6589Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 709928..711193 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6589.t1.start1Gchil6589.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 709928..709930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6589.t1.CDS1Gchil6589.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 709928..711193 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6589.t1.exon1Gchil6589.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 709928..711193 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6589.t1.stop1Gchil6589.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 711191..711193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6589.t1Gchil6589.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 709928..711193 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6589.t1 ID=Gchil6589.t1|Name=Gchil6589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=422bp
MTSRFDAARRRHALFAADVQLLRGTVRTPRPIAPPSSSSLPSLPPLPPLP
PPTPVSGAGVQATRLAATRDGAFVCCSATAAFHLSVRGWRKRSRAAAAAT
AAAAPQHSSPSSLVTSAVADDYLVPQGECDVQATRDVLHSAHRAEIQSVA
CDARRVATVDAYGRCVLTRVDAATGVKHILRPPSTRDGESGWCGVALHAR
HASMCAITRQSHRDATLFDGELVTRRFHTVCAPRAAVFSGALLVVADGND
LTLFDARAAERGGCAARVRVARAPLLCVSADDGGHANDDADALGTGGEDR
ALAVVDVRVMRVRARWRACVRHALTAVVLRASHAVVSGADNELVGGVLDH
GDVDDDGLGRRESRAMLSGALPGARGRAFAVRADARVVGLAATPATTARG
ELRVGALSETGALYVLRACAS*
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spliced messenger RNA

>Gchil6589.t1 ID=Gchil6589.t1|Name=Gchil6589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00004390_pilon:709928..711193+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAGCCGCTTCGATGCGGCGCGCCGCCGCCACGCGCTCTTCGCCGC
CGACGTGCAGCTGCTGCGCGGCACCGTGCGCACTCCGCGCCCAATCGCGC
CGCCGTCGTCTTCGTcgttgccgtcgttgccgccgttgccgccgttgccg
ccgCCGACGCCCGTGTCGGGCGCCGGCGTGCAGGCCACGCGACTGGCGGC
CACGCGCGACGGTGCCTTTGTGTGTTGTAGCGCCACGGCCGCTTTCCATC
TCAGCGTGCgcggctggcgcaagcgctcgcgcgccgctgccgccgcaact
gcggccgccgcgccgcagcactcgtcgccgtcgtcgcTGGTGACGAGCGC
GGTGGCGGACGATTACCTGGTACCGCAGGGCGAGTGCGACGTGCAAGCCA
CTCGCGACGTACTTCACAGCGCGCATCGCGCCGAGATTCAGTCCGTGGCG
TGCGACGCGCGTCGCGTGGCAACCGTTGATGCGTACGGTCGCTGCGTACT
TACGCGCGTAGACGCGGCGACTGGCGTCAAGCACATTCTTCGCCCGCCGT
CCACGCGCGACGGCGAGTCGGGTTGGTGTGGAGTTGCGCTACACGCACGC
CACGCCTCCATGTGCGCCATCACACGCCAGTCGCACCGCGACGCCACCCT
CTTCGACGGCGAACTGGTCACACGTCGCTTCCACACGGTGTGTGCGCCGC
GCGCCGCCGTGTTCAGCGGCGCCCTTCTTGTCGTCGCCGACGGCAACGAC
CTCACTCTATTCGACGCGCGCGCGGCCGAGCGCGGCGGATGCGCGGCGCG
CGTGCGCGTGGCGCGCGCGCCGCTGCTGTGCGTGAGCGCGGACGACGGCG
GCCACGCCAATGACGACGCGGACGCGCTGGGCACAGGCGGTGAGGATCGC
GCACTGGCGGTGGTGGACGTGCGCGTCATGCGCGTGCGCGCGCGGTGGCG
CGCGTGTGTGAGACATGCGTTGACGGCTGTGGTGTTACGCGCGTCGCATG
CCGTGGTGAGCGGCGCGGATAACGAGCTGGTGGGCGGTGTGCTTGACCAC
GGCGACGTGGACGATGACGGCTTGGGACGACGCGAGTCGCGCGCTATGCT
GTCGGGCGCGCTGCCCGGCGCGCGCGGGAGAGCGTTTGCTGTGCGCGCTG
ACGCGCGCGTGGTGGggctggcggccacgccggcgacgacggcgcgcggc
gagctgcgcgtgggcgCGCTGTCCGAGACGGGCGCGCTGTACGTGCTGCG
CGCGTGCGCTTCGTGA
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protein sequence of Gchil6589.t1

>Gchil6589.t1 ID=Gchil6589.t1|Name=Gchil6589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=422bp
MTSRFDAARRRHALFAADVQLLRGTVRTPRPIAPPSSSSLPSLPPLPPLP
PPTPVSGAGVQATRLAATRDGAFVCCSATAAFHLSVRGWRKRSRAAAAAT
AAAAPQHSSPSSLVTSAVADDYLVPQGECDVQATRDVLHSAHRAEIQSVA
CDARRVATVDAYGRCVLTRVDAATGVKHILRPPSTRDGESGWCGVALHAR
HASMCAITRQSHRDATLFDGELVTRRFHTVCAPRAAVFSGALLVVADGND
LTLFDARAAERGGCAARVRVARAPLLCVSADDGGHANDDADALGTGGEDR
ALAVVDVRVMRVRARWRACVRHALTAVVLRASHAVVSGADNELVGGVLDH
GDVDDDGLGRRESRAMLSGALPGARGRAFAVRADARVVGLAATPATTARG
ELRVGALSETGALYVLRACAS*
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mRNA from alignment at tig00004390_pilon:709928..711193+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6589.t1 ID=Gchil6589.t1|Name=Gchil6589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1266bp|location=Sequence derived from alignment at tig00004390_pilon:709928..711193+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAGCCGCTTCGATGCGGCGCGCCGCCGCCACGCGCTCTTCGCCGC
CGACGTGCAGCTGCTGCGCGGCACCGTGCGCACTCCGCGCCCAATCGCGC
CGCCGTCGTCTTCGTcgttgccgtcgttgccgccgttgccgccgttgccg
ccgCCGACGCCCGTGTCGGGCGCCGGCGTGCAGGCCACGCGACTGGCGGC
CACGCGCGACGGTGCCTTTGTGTGTTGTAGCGCCACGGCCGCTTTCCATC
TCAGCGTGCgcggctggcgcaagcgctcgcgcgccgctgccgccgcaact
gcggccgccgcgccgcagcactcgtcgccgtcgtcgcTGGTGACGAGCGC
GGTGGCGGACGATTACCTGGTACCGCAGGGCGAGTGCGACGTGCAAGCCA
CTCGCGACGTACTTCACAGCGCGCATCGCGCCGAGATTCAGTCCGTGGCG
TGCGACGCGCGTCGCGTGGCAACCGTTGATGCGTACGGTCGCTGCGTACT
TACGCGCGTAGACGCGGCGACTGGCGTCAAGCACATTCTTCGCCCGCCGT
CCACGCGCGACGGCGAGTCGGGTTGGTGTGGAGTTGCGCTACACGCACGC
CACGCCTCCATGTGCGCCATCACACGCCAGTCGCACCGCGACGCCACCCT
CTTCGACGGCGAACTGGTCACACGTCGCTTCCACACGGTGTGTGCGCCGC
GCGCCGCCGTGTTCAGCGGCGCCCTTCTTGTCGTCGCCGACGGCAACGAC
CTCACTCTATTCGACGCGCGCGCGGCCGAGCGCGGCGGATGCGCGGCGCG
CGTGCGCGTGGCGCGCGCGCCGCTGCTGTGCGTGAGCGCGGACGACGGCG
GCCACGCCAATGACGACGCGGACGCGCTGGGCACAGGCGGTGAGGATCGC
GCACTGGCGGTGGTGGACGTGCGCGTCATGCGCGTGCGCGCGCGGTGGCG
CGCGTGTGTGAGACATGCGTTGACGGCTGTGGTGTTACGCGCGTCGCATG
CCGTGGTGAGCGGCGCGGATAACGAGCTGGTGGGCGGTGTGCTTGACCAC
GGCGACGTGGACGATGACGGCTTGGGACGACGCGAGTCGCGCGCTATGCT
GTCGGGCGCGCTGCCCGGCGCGCGCGGGAGAGCGTTTGCTGTGCGCGCTG
ACGCGCGCGTGGTGGggctggcggccacgccggcgacgacggcgcgcggc
gagctgcgcgtgggcgCGCTGTCCGAGACGGGCGCGCTGTACGTGCTGCG
CGCGTGCGCTTCGTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:709928..711193+

>Gchil6589.t1 ID=Gchil6589.t1|Name=Gchil6589.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1266bp|location=Sequence derived from alignment at tig00004390_pilon:709928..711193+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAGCCGCTTCGATGCGGCGCGCCGCCGCCACGCGCTCTTCGCCGC
CGACGTGCAGCTGCTGCGCGGCACCGTGCGCACTCCGCGCCCAATCGCGC
CGCCGTCGTCTTCGTcgttgccgtcgttgccgccgttgccgccgttgccg
ccgCCGACGCCCGTGTCGGGCGCCGGCGTGCAGGCCACGCGACTGGCGGC
CACGCGCGACGGTGCCTTTGTGTGTTGTAGCGCCACGGCCGCTTTCCATC
TCAGCGTGCgcggctggcgcaagcgctcgcgcgccgctgccgccgcaact
gcggccgccgcgccgcagcactcgtcgccgtcgtcgcTGGTGACGAGCGC
GGTGGCGGACGATTACCTGGTACCGCAGGGCGAGTGCGACGTGCAAGCCA
CTCGCGACGTACTTCACAGCGCGCATCGCGCCGAGATTCAGTCCGTGGCG
TGCGACGCGCGTCGCGTGGCAACCGTTGATGCGTACGGTCGCTGCGTACT
TACGCGCGTAGACGCGGCGACTGGCGTCAAGCACATTCTTCGCCCGCCGT
CCACGCGCGACGGCGAGTCGGGTTGGTGTGGAGTTGCGCTACACGCACGC
CACGCCTCCATGTGCGCCATCACACGCCAGTCGCACCGCGACGCCACCCT
CTTCGACGGCGAACTGGTCACACGTCGCTTCCACACGGTGTGTGCGCCGC
GCGCCGCCGTGTTCAGCGGCGCCCTTCTTGTCGTCGCCGACGGCAACGAC
CTCACTCTATTCGACGCGCGCGCGGCCGAGCGCGGCGGATGCGCGGCGCG
CGTGCGCGTGGCGCGCGCGCCGCTGCTGTGCGTGAGCGCGGACGACGGCG
GCCACGCCAATGACGACGCGGACGCGCTGGGCACAGGCGGTGAGGATCGC
GCACTGGCGGTGGTGGACGTGCGCGTCATGCGCGTGCGCGCGCGGTGGCG
CGCGTGTGTGAGACATGCGTTGACGGCTGTGGTGTTACGCGCGTCGCATG
CCGTGGTGAGCGGCGCGGATAACGAGCTGGTGGGCGGTGTGCTTGACCAC
GGCGACGTGGACGATGACGGCTTGGGACGACGCGAGTCGCGCGCTATGCT
GTCGGGCGCGCTGCCCGGCGCGCGCGGGAGAGCGTTTGCTGTGCGCGCTG
ACGCGCGCGTGGTGGggctggcggccacgccggcgacgacggcgcgcggc
gagctgcgcgtgggcgCGCTGTCCGAGACGGGCGCGCTGTACGTGCTGCG
CGCGTGCGCTTCGTGA
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