Gchil6583.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6583.t1
Unique Name	Gchil6583.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	667

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:695073..697073 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36080.S2IVS3
Preferred name	NOG1
PFAMs	NOG1,NOGCT
Max annot lvl	4751\|Fungi
KEGG ko	ko:K06943
KEGG Pathway	ko03008,map03008
GOs	GO:0000054,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0017076,GO:0019001,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042273,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065003,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1902626,GO:1990904
Evalue	4.57e-214
EggNOG OGs	COG1084@1\|root,KOG1490@2759\|Eukaryota,39M2V@33154\|Opisthokonta,3NUDD@4751\|Fungi,1GS5Q@112252\|Fungi incertae sedis
Description	Involved in the biogenesis of the 60S ribosomal subunit
COG category	S
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6583	Gchil6583	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 695073..697073 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6583.t1.start1	Gchil6583.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 695073..695075 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6583.t1.CDS1	Gchil6583.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 695073..697073 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6583.t1.exon1	Gchil6583.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 695073..697073 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6583.t1.stop1	Gchil6583.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 697071..697073 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6583.t1	Gchil6583.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 695073..697073 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:695073..697073+
coding sequence from alignment at tig00004390_pilon:695073..697073+

mRNA sequence

>Gchil6583.t1 ID=Gchil6583.t1|Name=Gchil6583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=667bp
MVLVNFKTITVVSAADALVDNVLSKTQRKTPTVVHKGYSIGRIRDFYMRK
VKFSQQMFHDKLSQILDDFPKFDELHPFYADLLNVLYDRDHYKLALGQLA
TARSLIDGIARDYVRLLKYADSLYRCKCLKRAALGRMCTLISRHKKNLAY
LEQVRQHLARLPSIDPATRTLLISGFPNVGKSSFINKITRADVDVQPYAF
TTKSLFVGHCDFKYLRWQVIDTPGILDHELEARNTIEMQSITALAHLRAC
ILFFIDPSEQCGYSLEKQHSLFKSIMPLFANKPVIVVANKTDLGWESDLD
DSGRALLESFQSDSGGRAILMKMSTHEEVGVTEVKNTACERLLEARVESK
VRGKKIQKVLNRLHLATPKALSEERRPNIPASVLAKRAIKSQMAEDTEVD
DTDIDMGSEGGGPGGRKLERDLQEENGGAGVYSMDWRKLYQLRKREWAYD
VMPEIVDGKNIADFVDPDIGAKLHQLELEEEAREAVRDVTDDAEVGGFRF
VTDEEKQVVQQIKDRKSLIIQDSVREKNAHKHRSALQRNKVPARRSRLQE
HLEGLGLEKEEASDLVDRAASRRGVKRARSESAAISAAREGSRTRSVSKP
RSVSIVRNDGFSNPHQKAKAMELARKKQKNSIAKYARKGDADRSIPSKLP
KHLFSGKRGIGKTDRR*

spliced messenger RNA

>Gchil6583.t1 ID=Gchil6583.t1|Name=Gchil6583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00004390_pilon:695073..697073+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTGGTAAACTTTAAGACCATAACAGTCGTATCAGCAGCGGATGC
TCTGGTCGACAATGTGTTATCAAAAACGCAGCGAAAGACGCCCACAGTGG
TGCACAAAGGGTACTCAATTGGTCGTATTCGCGACTTCTACATGCGAAAA
GTAAAATTCTCTCAACAGATGTTTCATGACAAACTTTCGCAGATTCTGGA
CGACTTTCCGAAGTTTGACGAACTGCATCCATTCTATGCAGATTTGCTCA
ACGTTTTGTACGACCGTGATCATTACAAGCTTGCTCTTGGACAACTTGCA
ACTGCTCGATCCTTAATTGATGGAATAGCGAGAGATTACGTGCGTTTGTT
GAAGTACGCAGATTCTCTGTATCGCTGCAAATGTCTCAAACGCGCTGCTT
TGGGACGGATGTGCACACTCATTTCGCGCCATAAGAAGAATCTTGCTTAC
CTGGAACAAGTGCGACAACATCTAGCTCGTTTGCCGTCTATAGATCCGGC
CACGAGAACTCTACTAATTTCTGGATTCCCAAACGTTGGAAAGAGCTCCT
TTATCAACAAGATCACCCGTGCCGACGTTGACGTGCAACCATATGCCTTC
ACAACCAAATCCCTTTTTGTCGGACATTGTGACTTCAAGTACCTCAGATG
GCAAGTGATTGATACACCCGGGATTTTGGACCATGAGCTGGAAGCTCGAA
ATACCATCGAGATGCAGAGCATTACTGCACTAGCTCACTTGCGAGCCTGT
ATTTTGTTTTTCATTGACCCCAGCGAGCAATGTGGATATTCCCTCGAAAA
ACAGCATTCCTTGTTTAAGAGCATAATGCCCTTATTCGCTAACAAGCCTG
TCATTGTAGTTGCAAACAAGACAGATCTTGGGTGGGAATCAGACCTCGAT
GATTCCGGTCGAGCATTGCTAGAATCCTTCCAATCTGATTCAGGGGGCAG
AGCTATACTAATGAAGATGTCCACCCACGAGGAGGTTGGCGTGACTGAAG
TGAAGAACACCGCATGTGAAAGGCTTTTAGAAGCCAGAGTTGAGTCTAAA
GTTCGAGGAAAGAAGATACAAAAAGTTCTTAATCGCTTACATCTTGCAAC
TCCGAAGGCCCTATCTGAAGAGAGGAGACCAAACATACCTGCTTCCGTGC
TCGCAAAAAGGGCCATCAAAAGCCAAATGGCAGAGGATACCGAGGTCGAC
GACACTGATATTGACATGGGGTCGGAAGGAGGTGGTCCTGGCGGACGGAA
ACTTGAAAGAGATTTACAAGAAGAAAATGGTGGGGCTGGTGTGTATTCTA
TGGATTGGCGCAAGCTCTACCAACTTCGGAAACGAGAATGGGCGTATGAT
GTCATGCCAGAAATTGTTGACGGAAAGAACATTGCAGACTTCGTTGATCC
AGATATAGGAGCCAAGCTTCATCAACTTGAACTTGAAGAAGAAGCTCGAG
AAGCTGTGCGAGATGTGACAGATGACGCCGAAGTTGGTGGCTTCCGCTTC
GTCACAGATGAAGAGAAGCAGGTTGTGCAACAAATTAAGGATCGTAAATC
TCTCATTATACAGGATTCTGTTCGTGAGAAAAATGCGCACAAACATCGCA
GTGCATTGCAAAGAAATAAGGTCCCGGCTCGCCGTTCTCGACTTCAGGAG
CATCTGGAGGGTCTTGGACTTGAAAAAGAAGAAGCTTCAGATTTAGTGGA
TCGTGCCGCCAGTCGCAGAGGGGTGAAACGAGCGAGGTCTGAAAGTGCGG
CAATTTCGGCAGCTCGCGAAGGAAGCCGAACTCGCTCGGTATCTAAACCA
CGATCCGTTAGTATTGTACGGAATGACGGTTTCTCCAACCCTCACCAGAA
GGCGAAGGCCATGGAATTGGCCAGAAAGAAACAGAAGAATAGTATAGCGA
AGTATGCTCGGAAGGGAGATGCAGACCGAAGCATTCCTTCGAAACTTCCG
AAGCACTTATTCAGTGGAAAACGTGGAATTGGTAAGACCGATCGAAGATA
G

protein sequence of Gchil6583.t1

>Gchil6583.t1 ID=Gchil6583.t1|Name=Gchil6583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=667bp
MVLVNFKTITVVSAADALVDNVLSKTQRKTPTVVHKGYSIGRIRDFYMRK
VKFSQQMFHDKLSQILDDFPKFDELHPFYADLLNVLYDRDHYKLALGQLA
TARSLIDGIARDYVRLLKYADSLYRCKCLKRAALGRMCTLISRHKKNLAY
LEQVRQHLARLPSIDPATRTLLISGFPNVGKSSFINKITRADVDVQPYAF
TTKSLFVGHCDFKYLRWQVIDTPGILDHELEARNTIEMQSITALAHLRAC
ILFFIDPSEQCGYSLEKQHSLFKSIMPLFANKPVIVVANKTDLGWESDLD
DSGRALLESFQSDSGGRAILMKMSTHEEVGVTEVKNTACERLLEARVESK
VRGKKIQKVLNRLHLATPKALSEERRPNIPASVLAKRAIKSQMAEDTEVD
DTDIDMGSEGGGPGGRKLERDLQEENGGAGVYSMDWRKLYQLRKREWAYD
VMPEIVDGKNIADFVDPDIGAKLHQLELEEEAREAVRDVTDDAEVGGFRF
VTDEEKQVVQQIKDRKSLIIQDSVREKNAHKHRSALQRNKVPARRSRLQE
HLEGLGLEKEEASDLVDRAASRRGVKRARSESAAISAAREGSRTRSVSKP
RSVSIVRNDGFSNPHQKAKAMELARKKQKNSIAKYARKGDADRSIPSKLP
KHLFSGKRGIGKTDRR*

mRNA from alignment at tig00004390_pilon:695073..697073+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6583.t1 ID=Gchil6583.t1|Name=Gchil6583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00004390_pilon:695073..697073+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTTGGTAAACTTTAAGACCATAACAGTCGTATCAGCAGCGGATGC
TCTGGTCGACAATGTGTTATCAAAAACGCAGCGAAAGACGCCCACAGTGG
TGCACAAAGGGTACTCAATTGGTCGTATTCGCGACTTCTACATGCGAAAA
GTAAAATTCTCTCAACAGATGTTTCATGACAAACTTTCGCAGATTCTGGA
CGACTTTCCGAAGTTTGACGAACTGCATCCATTCTATGCAGATTTGCTCA
ACGTTTTGTACGACCGTGATCATTACAAGCTTGCTCTTGGACAACTTGCA
ACTGCTCGATCCTTAATTGATGGAATAGCGAGAGATTACGTGCGTTTGTT
GAAGTACGCAGATTCTCTGTATCGCTGCAAATGTCTCAAACGCGCTGCTT
TGGGACGGATGTGCACACTCATTTCGCGCCATAAGAAGAATCTTGCTTAC
CTGGAACAAGTGCGACAACATCTAGCTCGTTTGCCGTCTATAGATCCGGC
CACGAGAACTCTACTAATTTCTGGATTCCCAAACGTTGGAAAGAGCTCCT
TTATCAACAAGATCACCCGTGCCGACGTTGACGTGCAACCATATGCCTTC
ACAACCAAATCCCTTTTTGTCGGACATTGTGACTTCAAGTACCTCAGATG
GCAAGTGATTGATACACCCGGGATTTTGGACCATGAGCTGGAAGCTCGAA
ATACCATCGAGATGCAGAGCATTACTGCACTAGCTCACTTGCGAGCCTGT
ATTTTGTTTTTCATTGACCCCAGCGAGCAATGTGGATATTCCCTCGAAAA
ACAGCATTCCTTGTTTAAGAGCATAATGCCCTTATTCGCTAACAAGCCTG
TCATTGTAGTTGCAAACAAGACAGATCTTGGGTGGGAATCAGACCTCGAT
GATTCCGGTCGAGCATTGCTAGAATCCTTCCAATCTGATTCAGGGGGCAG
AGCTATACTAATGAAGATGTCCACCCACGAGGAGGTTGGCGTGACTGAAG
TGAAGAACACCGCATGTGAAAGGCTTTTAGAAGCCAGAGTTGAGTCTAAA
GTTCGAGGAAAGAAGATACAAAAAGTTCTTAATCGCTTACATCTTGCAAC
TCCGAAGGCCCTATCTGAAGAGAGGAGACCAAACATACCTGCTTCCGTGC
TCGCAAAAAGGGCCATCAAAAGCCAAATGGCAGAGGATACCGAGGTCGAC
GACACTGATATTGACATGGGGTCGGAAGGAGGTGGTCCTGGCGGACGGAA
ACTTGAAAGAGATTTACAAGAAGAAAATGGTGGGGCTGGTGTGTATTCTA
TGGATTGGCGCAAGCTCTACCAACTTCGGAAACGAGAATGGGCGTATGAT
GTCATGCCAGAAATTGTTGACGGAAAGAACATTGCAGACTTCGTTGATCC
AGATATAGGAGCCAAGCTTCATCAACTTGAACTTGAAGAAGAAGCTCGAG
AAGCTGTGCGAGATGTGACAGATGACGCCGAAGTTGGTGGCTTCCGCTTC
GTCACAGATGAAGAGAAGCAGGTTGTGCAACAAATTAAGGATCGTAAATC
TCTCATTATACAGGATTCTGTTCGTGAGAAAAATGCGCACAAACATCGCA
GTGCATTGCAAAGAAATAAGGTCCCGGCTCGCCGTTCTCGACTTCAGGAG
CATCTGGAGGGTCTTGGACTTGAAAAAGAAGAAGCTTCAGATTTAGTGGA
TCGTGCCGCCAGTCGCAGAGGGGTGAAACGAGCGAGGTCTGAAAGTGCGG
CAATTTCGGCAGCTCGCGAAGGAAGCCGAACTCGCTCGGTATCTAAACCA
CGATCCGTTAGTATTGTACGGAATGACGGTTTCTCCAACCCTCACCAGAA
GGCGAAGGCCATGGAATTGGCCAGAAAGAAACAGAAGAATAGTATAGCGA
AGTATGCTCGGAAGGGAGATGCAGACCGAAGCATTCCTTCGAAACTTCCG
AAGCACTTATTCAGTGGAAAACGTGGAATTGGTAAGACCGATCGAAGATA
G

Coding sequence (CDS) from alignment at tig00004390_pilon:695073..697073+

>Gchil6583.t1 ID=Gchil6583.t1|Name=Gchil6583.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2001bp|location=Sequence derived from alignment at tig00004390_pilon:695073..697073+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTCTTGGTAAACTTTAAGACCATAACAGTCGTATCAGCAGCGGATGC
TCTGGTCGACAATGTGTTATCAAAAACGCAGCGAAAGACGCCCACAGTGG
TGCACAAAGGGTACTCAATTGGTCGTATTCGCGACTTCTACATGCGAAAA
GTAAAATTCTCTCAACAGATGTTTCATGACAAACTTTCGCAGATTCTGGA
CGACTTTCCGAAGTTTGACGAACTGCATCCATTCTATGCAGATTTGCTCA
ACGTTTTGTACGACCGTGATCATTACAAGCTTGCTCTTGGACAACTTGCA
ACTGCTCGATCCTTAATTGATGGAATAGCGAGAGATTACGTGCGTTTGTT
GAAGTACGCAGATTCTCTGTATCGCTGCAAATGTCTCAAACGCGCTGCTT
TGGGACGGATGTGCACACTCATTTCGCGCCATAAGAAGAATCTTGCTTAC
CTGGAACAAGTGCGACAACATCTAGCTCGTTTGCCGTCTATAGATCCGGC
CACGAGAACTCTACTAATTTCTGGATTCCCAAACGTTGGAAAGAGCTCCT
TTATCAACAAGATCACCCGTGCCGACGTTGACGTGCAACCATATGCCTTC
ACAACCAAATCCCTTTTTGTCGGACATTGTGACTTCAAGTACCTCAGATG
GCAAGTGATTGATACACCCGGGATTTTGGACCATGAGCTGGAAGCTCGAA
ATACCATCGAGATGCAGAGCATTACTGCACTAGCTCACTTGCGAGCCTGT
ATTTTGTTTTTCATTGACCCCAGCGAGCAATGTGGATATTCCCTCGAAAA
ACAGCATTCCTTGTTTAAGAGCATAATGCCCTTATTCGCTAACAAGCCTG
TCATTGTAGTTGCAAACAAGACAGATCTTGGGTGGGAATCAGACCTCGAT
GATTCCGGTCGAGCATTGCTAGAATCCTTCCAATCTGATTCAGGGGGCAG
AGCTATACTAATGAAGATGTCCACCCACGAGGAGGTTGGCGTGACTGAAG
TGAAGAACACCGCATGTGAAAGGCTTTTAGAAGCCAGAGTTGAGTCTAAA
GTTCGAGGAAAGAAGATACAAAAAGTTCTTAATCGCTTACATCTTGCAAC
TCCGAAGGCCCTATCTGAAGAGAGGAGACCAAACATACCTGCTTCCGTGC
TCGCAAAAAGGGCCATCAAAAGCCAAATGGCAGAGGATACCGAGGTCGAC
GACACTGATATTGACATGGGGTCGGAAGGAGGTGGTCCTGGCGGACGGAA
ACTTGAAAGAGATTTACAAGAAGAAAATGGTGGGGCTGGTGTGTATTCTA
TGGATTGGCGCAAGCTCTACCAACTTCGGAAACGAGAATGGGCGTATGAT
GTCATGCCAGAAATTGTTGACGGAAAGAACATTGCAGACTTCGTTGATCC
AGATATAGGAGCCAAGCTTCATCAACTTGAACTTGAAGAAGAAGCTCGAG
AAGCTGTGCGAGATGTGACAGATGACGCCGAAGTTGGTGGCTTCCGCTTC
GTCACAGATGAAGAGAAGCAGGTTGTGCAACAAATTAAGGATCGTAAATC
TCTCATTATACAGGATTCTGTTCGTGAGAAAAATGCGCACAAACATCGCA
GTGCATTGCAAAGAAATAAGGTCCCGGCTCGCCGTTCTCGACTTCAGGAG
CATCTGGAGGGTCTTGGACTTGAAAAAGAAGAAGCTTCAGATTTAGTGGA
TCGTGCCGCCAGTCGCAGAGGGGTGAAACGAGCGAGGTCTGAAAGTGCGG
CAATTTCGGCAGCTCGCGAAGGAAGCCGAACTCGCTCGGTATCTAAACCA
CGATCCGTTAGTATTGTACGGAATGACGGTTTCTCCAACCCTCACCAGAA
GGCGAAGGCCATGGAATTGGCCAGAAAGAAACAGAAGAATAGTATAGCGA
AGTATGCTCGGAAGGGAGATGCAGACCGAAGCATTCCTTCGAAACTTCCG
AAGCACTTATTCAGTGGAAAACGTGGAATTGGTAAGACCGATCGAAGATA
G