Gchil6579.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6579.t1
Unique Name	Gchil6579.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:686834..687955 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	313612.L8106_21077
PFAMs	EAL,GAF,GAF_2,GGDEF,PAS,PAS_3,PAS_4,PAS_9
Max annot lvl	1117\|Cyanobacteria
Evalue	6.11e-11
EggNOG OGs	COG2203@1\|root,COG5001@1\|root,COG2203@2\|Bacteria,COG5001@2\|Bacteria,1G0SY@1117\|Cyanobacteria,1H7V4@1150\|Oscillatoriales
Description	signal transduction protein containing a membrane domain an EAL and a GGDEF domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6579	Gchil6579	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 686834..687955 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6579.t1.start1	Gchil6579.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 686834..686836 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6579.t1.CDS1	Gchil6579.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 686834..687955 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6579.t1.exon1	Gchil6579.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 686834..687955 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6579.t1.stop1	Gchil6579.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 687953..687955 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6579.t1	Gchil6579.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 686834..687955 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:686834..687955+
coding sequence from alignment at tig00004390_pilon:686834..687955+

mRNA sequence

>Gchil6579.t1 ID=Gchil6579.t1|Name=Gchil6579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=374bp
MESNTALVSPLPPDFALLDDALLLAHQNSLPPSDTRASDFDLSLPLHDGS
ALFVIPQKFNPHSFFVPSLSATDGIHSDFSPERLFSLTSADGDSQSADDS
STLHLHATRGDVTRLAPPEPPALRPNVSHTRRCRAKVNTNFERLLQVLPD
PSSGIEVKHKAQVLQYAIDYYKHVSCKNRMLEMKLALRSPSEMYRWVQSV
VSASPNLKETLKSFIAMICLTKNWKYAELWAPQTRAGSSSVSLRYVAGAL
PPTVGGEALHRLRKYRARSRKYKFPPRCGVPGRVFLTMRPEWLPLLNDPV
AFPRAPHAVRNQVQVTFAVPVIVNGAVEMVVEFFDTERRDYDPATLNMAN
DIAAMFGKAFTEKDTSRCASQFW*

spliced messenger RNA

>Gchil6579.t1 ID=Gchil6579.t1|Name=Gchil6579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004390_pilon:686834..687955+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCCAACACCGCGCTTGTGAGCCCCCTTCCGCCAGACTTCGCCTT
GCTAGACGACGCTCTCCTGCTCGCTCATCAGAATTCGCTGCCGCCATCCG
ACACGCGTGCGTCTGACTTCGACCTCTCTCTTCCGCTTCACGATGGCTCC
GCCCTGTTTGTCATTCCGCAAAAGTTCAACCCGCACTCCTTTTTCGTTCC
TTCTCTCTCGGCAACCGATGGCATACATTCAGACTTCTCACCAGAGCGTC
TTTTTAGCTTGACATCGGCCGATGGTGATAGTCAGTCGGCAGATGATTCA
TCAACTCTGCACCTGCATGCTACCCGAGGGGACGTTACACGTCTCGCGCC
TCCTGAGCCACCCGCCCTTCGTCCAAACGTCTCCCACACACGCCGCTGTC
GCGCAAAGGTGAACACCAATTTCGAACGCCTTCTGCAAGTGCTACCCGAC
CCGTCATCCGGAATCGAAGTCAAGCATAAGGCGCAAGTATTACAATATGC
TATCGACTACTACAAACACGTCAGTTGCAAAAACCGTATGCTTGAGATGA
AGCTCGCGCTCAGGTCACCATCCGAGATGTACCGTTGGGTTCAGTCTGTG
GTGTCAGCATCCCCCAATCTAAAAGAGACACTCAAATCTTTCATAGCCAT
GATCTGCCTGACAAAGAACTGGAAGTACGCCGAGCTATGGGCCCCGCAAA
CGCGTGCCGGCAGCTCATCCGTATCGCTCAGGTACGTAGCCGGTGCTCTT
CCGCCCACTGTCGGCGGAGAAGCGCTGCACAGGCTGAGAAAATATCGCGC
ACGTTCGCGAAAGTACAAGTTTCCGCCGCGATGTGGTGTGCCAGGACGGG
TGTTTCTCACCATGAGGCCGGAGTGGCTGCCGCTTCTCAACGACCCCGTC
GCGTTTCCCCGCGCACCTCATGCCGTGCGGAATCAAGTGCAGGTCACCTT
TGCCGTCCCCGTCATCGTCAATGGCGCAGTGGAAATGGTTGTAGAGTTTT
TTGACACAGAAAGAAGGGATTACGATCCGGCCACCCTCAACATGGCGAAC
GACATAGCCGCAATGTTTGGCAAGGCTTTCACTGAAAAGGACACCTCTCG
ATGCGCTTCGCAATTCTGGTAG

protein sequence of Gchil6579.t1

>Gchil6579.t1 ID=Gchil6579.t1|Name=Gchil6579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=374bp
MESNTALVSPLPPDFALLDDALLLAHQNSLPPSDTRASDFDLSLPLHDGS
ALFVIPQKFNPHSFFVPSLSATDGIHSDFSPERLFSLTSADGDSQSADDS
STLHLHATRGDVTRLAPPEPPALRPNVSHTRRCRAKVNTNFERLLQVLPD
PSSGIEVKHKAQVLQYAIDYYKHVSCKNRMLEMKLALRSPSEMYRWVQSV
VSASPNLKETLKSFIAMICLTKNWKYAELWAPQTRAGSSSVSLRYVAGAL
PPTVGGEALHRLRKYRARSRKYKFPPRCGVPGRVFLTMRPEWLPLLNDPV
AFPRAPHAVRNQVQVTFAVPVIVNGAVEMVVEFFDTERRDYDPATLNMAN
DIAAMFGKAFTEKDTSRCASQFW*

mRNA from alignment at tig00004390_pilon:686834..687955+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6579.t1 ID=Gchil6579.t1|Name=Gchil6579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00004390_pilon:686834..687955+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCCAACACCGCGCTTGTGAGCCCCCTTCCGCCAGACTTCGCCTT
GCTAGACGACGCTCTCCTGCTCGCTCATCAGAATTCGCTGCCGCCATCCG
ACACGCGTGCGTCTGACTTCGACCTCTCTCTTCCGCTTCACGATGGCTCC
GCCCTGTTTGTCATTCCGCAAAAGTTCAACCCGCACTCCTTTTTCGTTCC
TTCTCTCTCGGCAACCGATGGCATACATTCAGACTTCTCACCAGAGCGTC
TTTTTAGCTTGACATCGGCCGATGGTGATAGTCAGTCGGCAGATGATTCA
TCAACTCTGCACCTGCATGCTACCCGAGGGGACGTTACACGTCTCGCGCC
TCCTGAGCCACCCGCCCTTCGTCCAAACGTCTCCCACACACGCCGCTGTC
GCGCAAAGGTGAACACCAATTTCGAACGCCTTCTGCAAGTGCTACCCGAC
CCGTCATCCGGAATCGAAGTCAAGCATAAGGCGCAAGTATTACAATATGC
TATCGACTACTACAAACACGTCAGTTGCAAAAACCGTATGCTTGAGATGA
AGCTCGCGCTCAGGTCACCATCCGAGATGTACCGTTGGGTTCAGTCTGTG
GTGTCAGCATCCCCCAATCTAAAAGAGACACTCAAATCTTTCATAGCCAT
GATCTGCCTGACAAAGAACTGGAAGTACGCCGAGCTATGGGCCCCGCAAA
CGCGTGCCGGCAGCTCATCCGTATCGCTCAGGTACGTAGCCGGTGCTCTT
CCGCCCACTGTCGGCGGAGAAGCGCTGCACAGGCTGAGAAAATATCGCGC
ACGTTCGCGAAAGTACAAGTTTCCGCCGCGATGTGGTGTGCCAGGACGGG
TGTTTCTCACCATGAGGCCGGAGTGGCTGCCGCTTCTCAACGACCCCGTC
GCGTTTCCCCGCGCACCTCATGCCGTGCGGAATCAAGTGCAGGTCACCTT
TGCCGTCCCCGTCATCGTCAATGGCGCAGTGGAAATGGTTGTAGAGTTTT
TTGACACAGAAAGAAGGGATTACGATCCGGCCACCCTCAACATGGCGAAC
GACATAGCCGCAATGTTTGGCAAGGCTTTCACTGAAAAGGACACCTCTCG
ATGCGCTTCGCAATTCTGGTAG

Coding sequence (CDS) from alignment at tig00004390_pilon:686834..687955+

>Gchil6579.t1 ID=Gchil6579.t1|Name=Gchil6579.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00004390_pilon:686834..687955+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGTCCAACACCGCGCTTGTGAGCCCCCTTCCGCCAGACTTCGCCTT
GCTAGACGACGCTCTCCTGCTCGCTCATCAGAATTCGCTGCCGCCATCCG
ACACGCGTGCGTCTGACTTCGACCTCTCTCTTCCGCTTCACGATGGCTCC
GCCCTGTTTGTCATTCCGCAAAAGTTCAACCCGCACTCCTTTTTCGTTCC
TTCTCTCTCGGCAACCGATGGCATACATTCAGACTTCTCACCAGAGCGTC
TTTTTAGCTTGACATCGGCCGATGGTGATAGTCAGTCGGCAGATGATTCA
TCAACTCTGCACCTGCATGCTACCCGAGGGGACGTTACACGTCTCGCGCC
TCCTGAGCCACCCGCCCTTCGTCCAAACGTCTCCCACACACGCCGCTGTC
GCGCAAAGGTGAACACCAATTTCGAACGCCTTCTGCAAGTGCTACCCGAC
CCGTCATCCGGAATCGAAGTCAAGCATAAGGCGCAAGTATTACAATATGC
TATCGACTACTACAAACACGTCAGTTGCAAAAACCGTATGCTTGAGATGA
AGCTCGCGCTCAGGTCACCATCCGAGATGTACCGTTGGGTTCAGTCTGTG
GTGTCAGCATCCCCCAATCTAAAAGAGACACTCAAATCTTTCATAGCCAT
GATCTGCCTGACAAAGAACTGGAAGTACGCCGAGCTATGGGCCCCGCAAA
CGCGTGCCGGCAGCTCATCCGTATCGCTCAGGTACGTAGCCGGTGCTCTT
CCGCCCACTGTCGGCGGAGAAGCGCTGCACAGGCTGAGAAAATATCGCGC
ACGTTCGCGAAAGTACAAGTTTCCGCCGCGATGTGGTGTGCCAGGACGGG
TGTTTCTCACCATGAGGCCGGAGTGGCTGCCGCTTCTCAACGACCCCGTC
GCGTTTCCCCGCGCACCTCATGCCGTGCGGAATCAAGTGCAGGTCACCTT
TGCCGTCCCCGTCATCGTCAATGGCGCAGTGGAAATGGTTGTAGAGTTTT
TTGACACAGAAAGAAGGGATTACGATCCGGCCACCCTCAACATGGCGAAC
GACATAGCCGCAATGTTTGGCAAGGCTTTCACTGAAAAGGACACCTCTCG
ATGCGCTTCGCAATTCTGGTAG