Gchil6572.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6572.t1
Unique Name	Gchil6572.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	518

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:663652..665205 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMO059CT
Preferred name	DNAJC21
PFAMs	DnaJ,zf-C2H2_2,zf-C2H2_jaz,zf-met
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00005,RC00059,RC00397
KEGG ko	ko:K00728,ko:K09506
KEGG Reaction	R04072,R07620,R11399
KEGG Pathway	ko00514,ko00515,ko01100,map00514,map00515,map01100
GOs	GO:0000054,GO:0000055,GO:0001671,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006457,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006897,GO:0006913,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016192,GO:0022613,GO:0030234,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032535,GO:0032781,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0050790,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060589,GO:0060590,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090066,GO:0090304,GO:0098657,GO:0098772,GO:1901360,GO:1990904
Evalue	2.3e-63
EggNOG OGs	KOG0717@1\|root,KOG0717@2759\|Eukaryota
EC	2.4.1.109
Description	zinc ion binding
COG category	A
CAZy	GT39
BRITE	ko00000,ko00001,ko01000,ko01003,ko03009,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6572	Gchil6572	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 663652..665205 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6572.t1.start1	Gchil6572.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 663652..663654 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6572.t1.CDS1	Gchil6572.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 663652..665205 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6572.t1.exon1	Gchil6572.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 663652..665205 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6572.t1.stop1	Gchil6572.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 665203..665205 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6572.t1	Gchil6572.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 663652..665205 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:663652..665205+
coding sequence from alignment at tig00004390_pilon:663652..665205+

mRNA sequence

>Gchil6572.t1 ID=Gchil6572.t1|Name=Gchil6572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=518bp
MAPPSKCLYETLKIALTATESEIKKAYRLQALTHHPDKNPERQEQAEEVF
KQIQNAYDVLSDPHERAWYDAHRDQILRGKDPNSEEVQASSATEVNLFAY
FSSSAWKGYDGEGGFYDVFQTLFDQLWKEETATSEKQRAKPTHKFGNGDT
PWEEVREFYQEWEPFSSSKSFGFADKWNLADAPNREYRRAMEKENKRQRA
KLKKEFNNDVRELVKFVKKRDHRVIRRRAEEEKERKERERVRKHKETIEK
EERRGEAQRVREAREAVLEEDADALDEILAGIALDEKIERRQQRKRAKGA
SDEETDSDTEEEEDIDDASVGDDDQFSSEEEELIEDLYCVACKKSFRTSA
QKADHERSKKHKAAMTKMKRQVLREEKDYLAMEDPRDSVDQRVSEPSEDF
SAAAFAQMPESKKKRKRKVRMQQATKFEEEAVGDEPESESEQTGLNEEEE
KEVDEGKRKHEERVLSKKEKRKLREEKKKAAGAVHKCNVCAEEFPSRTKL
MKHVNAKGHALHTERRR*

spliced messenger RNA

>Gchil6572.t1 ID=Gchil6572.t1|Name=Gchil6572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00004390_pilon:663652..665205+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCACCCTCGAAATGTCTCTACGAGACTTTAAAAATCGCTCTCAC
CGCAACAGAAAGTGAAATCAAGAAAGCCTACAGGCTTCAGGCTTTGACTC
ATCACCCAGACAAGAACCCCGAACGTCAAGAGCAAGCTGAAGAAGTATTC
AAACAAATCCAAAATGCATATGACGTCCTATCTGATCCCCACGAGCGCGC
CTGGTACGATGCTCATCGCGACCAAATTTTGCGCGGCAAGGACCCCAACT
CGGAGGAGGTCCAGGCTTCGAGTGCCACAGAAGTTAATCTTTTTGCGTAT
TTCAGCAGCTCAGCATGGAAGGGGTATGATGGCGAGGGTGGTTTTTACGA
TGTCTTTCAAACTCTTTTTGATCAATTATGGAAGGAGGAAACTGCTACGT
CTGAGAAACAAAGAGCGAAACCTACGCACAAGTTTGGAAACGGGGATACC
CCATGGGAGGAGGTGCGTGAGTTTTATCAAGAATGGGAACCCTTCTCCTC
GTCAAAGTCGTTCGGATTTGCAGATAAATGGAATCTGGCCGACGCTCCAA
ACAGAGAGTATCGCAGAGCTATGGAAAAAGAAAACAAACGTCAAAGAGCA
AAGTTGAAGAAAGAGTTCAACAATGACGTTCGCGAGCTTGTGAAGTTCGT
GAAAAAAAGAGATCACAGAGTCATCAGACGGCGAGCAGAGGAAGAGAAAG
AACGCAAGGAGAGAGAAAGGGTTAGAAAACACAAAGAAACTATCGAGAAG
GAAGAGAGAAGAGGTGAGGCACAGCGCGTACGAGAGGCCAGAGAGGCTGT
TCTTGAAGAAGACGCTGACGCACTTGATGAAATATTAGCGGGAATTGCTT
TGGATGAGAAAATCGAAAGAAGGCAGCAAAGAAAAAGAGCAAAAGGCGCG
AGTGACGAAGAAACTGATAGCGATACAGAAGAAGAGGAAGACATTGATGA
TGCTTCCGTAGGAGACGATGACCAGTTCTCAAGTGAGGAAGAAGAACTTA
TAGAAGACCTGTACTGCGTAGCGTGTAAAAAGTCATTCCGTACATCCGCG
CAAAAGGCAGATCATGAACGTTCGAAGAAACATAAAGCCGCCATGACCAA
AATGAAACGCCAAGTTCTAAGAGAGGAGAAAGATTATTTAGCGATGGAGG
ACCCACGGGATTCTGTCGATCAGCGTGTTTCCGAACCTAGCGAAGACTTT
TCTGCAGCTGCGTTTGCTCAAATGCCAGAGTCGAAGAAGAAGCGGAAACG
AAAGGTACGAATGCAGCAGGCCACTAAATTCGAGGAAGAAGCCGTAGGTG
ACGAGCCAGAAAGCGAAAGTGAACAAACTGGTTTGAATGAAGAGGAAGAA
AAAGAAGTGGATGAGGGGAAAAGAAAACACGAGGAACGTGTTTTGTCAAA
GAAGGAGAAACGGAAGCTAAGAGAAGAAAAGAAGAAGGCTGCTGGAGCTG
TGCACAAGTGCAATGTTTGTGCCGAAGAATTTCCATCGCGAACAAAACTT
ATGAAGCATGTAAATGCAAAAGGTCATGCTTTGCATACTGAACGACGACg
ttaa

protein sequence of Gchil6572.t1

>Gchil6572.t1 ID=Gchil6572.t1|Name=Gchil6572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=518bp
MAPPSKCLYETLKIALTATESEIKKAYRLQALTHHPDKNPERQEQAEEVF
KQIQNAYDVLSDPHERAWYDAHRDQILRGKDPNSEEVQASSATEVNLFAY
FSSSAWKGYDGEGGFYDVFQTLFDQLWKEETATSEKQRAKPTHKFGNGDT
PWEEVREFYQEWEPFSSSKSFGFADKWNLADAPNREYRRAMEKENKRQRA
KLKKEFNNDVRELVKFVKKRDHRVIRRRAEEEKERKERERVRKHKETIEK
EERRGEAQRVREAREAVLEEDADALDEILAGIALDEKIERRQQRKRAKGA
SDEETDSDTEEEEDIDDASVGDDDQFSSEEEELIEDLYCVACKKSFRTSA
QKADHERSKKHKAAMTKMKRQVLREEKDYLAMEDPRDSVDQRVSEPSEDF
SAAAFAQMPESKKKRKRKVRMQQATKFEEEAVGDEPESESEQTGLNEEEE
KEVDEGKRKHEERVLSKKEKRKLREEKKKAAGAVHKCNVCAEEFPSRTKL
MKHVNAKGHALHTERRR*

mRNA from alignment at tig00004390_pilon:663652..665205+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6572.t1 ID=Gchil6572.t1|Name=Gchil6572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00004390_pilon:663652..665205+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCACCCTCGAAATGTCTCTACGAGACTTTAAAAATCGCTCTCAC
CGCAACAGAAAGTGAAATCAAGAAAGCCTACAGGCTTCAGGCTTTGACTC
ATCACCCAGACAAGAACCCCGAACGTCAAGAGCAAGCTGAAGAAGTATTC
AAACAAATCCAAAATGCATATGACGTCCTATCTGATCCCCACGAGCGCGC
CTGGTACGATGCTCATCGCGACCAAATTTTGCGCGGCAAGGACCCCAACT
CGGAGGAGGTCCAGGCTTCGAGTGCCACAGAAGTTAATCTTTTTGCGTAT
TTCAGCAGCTCAGCATGGAAGGGGTATGATGGCGAGGGTGGTTTTTACGA
TGTCTTTCAAACTCTTTTTGATCAATTATGGAAGGAGGAAACTGCTACGT
CTGAGAAACAAAGAGCGAAACCTACGCACAAGTTTGGAAACGGGGATACC
CCATGGGAGGAGGTGCGTGAGTTTTATCAAGAATGGGAACCCTTCTCCTC
GTCAAAGTCGTTCGGATTTGCAGATAAATGGAATCTGGCCGACGCTCCAA
ACAGAGAGTATCGCAGAGCTATGGAAAAAGAAAACAAACGTCAAAGAGCA
AAGTTGAAGAAAGAGTTCAACAATGACGTTCGCGAGCTTGTGAAGTTCGT
GAAAAAAAGAGATCACAGAGTCATCAGACGGCGAGCAGAGGAAGAGAAAG
AACGCAAGGAGAGAGAAAGGGTTAGAAAACACAAAGAAACTATCGAGAAG
GAAGAGAGAAGAGGTGAGGCACAGCGCGTACGAGAGGCCAGAGAGGCTGT
TCTTGAAGAAGACGCTGACGCACTTGATGAAATATTAGCGGGAATTGCTT
TGGATGAGAAAATCGAAAGAAGGCAGCAAAGAAAAAGAGCAAAAGGCGCG
AGTGACGAAGAAACTGATAGCGATACAGAAGAAGAGGAAGACATTGATGA
TGCTTCCGTAGGAGACGATGACCAGTTCTCAAGTGAGGAAGAAGAACTTA
TAGAAGACCTGTACTGCGTAGCGTGTAAAAAGTCATTCCGTACATCCGCG
CAAAAGGCAGATCATGAACGTTCGAAGAAACATAAAGCCGCCATGACCAA
AATGAAACGCCAAGTTCTAAGAGAGGAGAAAGATTATTTAGCGATGGAGG
ACCCACGGGATTCTGTCGATCAGCGTGTTTCCGAACCTAGCGAAGACTTT
TCTGCAGCTGCGTTTGCTCAAATGCCAGAGTCGAAGAAGAAGCGGAAACG
AAAGGTACGAATGCAGCAGGCCACTAAATTCGAGGAAGAAGCCGTAGGTG
ACGAGCCAGAAAGCGAAAGTGAACAAACTGGTTTGAATGAAGAGGAAGAA
AAAGAAGTGGATGAGGGGAAAAGAAAACACGAGGAACGTGTTTTGTCAAA
GAAGGAGAAACGGAAGCTAAGAGAAGAAAAGAAGAAGGCTGCTGGAGCTG
TGCACAAGTGCAATGTTTGTGCCGAAGAATTTCCATCGCGAACAAAACTT
ATGAAGCATGTAAATGCAAAAGGTCATGCTTTGCATACTGAACGACGACg
ttaa

Coding sequence (CDS) from alignment at tig00004390_pilon:663652..665205+

>Gchil6572.t1 ID=Gchil6572.t1|Name=Gchil6572.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1554bp|location=Sequence derived from alignment at tig00004390_pilon:663652..665205+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCACCCTCGAAATGTCTCTACGAGACTTTAAAAATCGCTCTCAC
CGCAACAGAAAGTGAAATCAAGAAAGCCTACAGGCTTCAGGCTTTGACTC
ATCACCCAGACAAGAACCCCGAACGTCAAGAGCAAGCTGAAGAAGTATTC
AAACAAATCCAAAATGCATATGACGTCCTATCTGATCCCCACGAGCGCGC
CTGGTACGATGCTCATCGCGACCAAATTTTGCGCGGCAAGGACCCCAACT
CGGAGGAGGTCCAGGCTTCGAGTGCCACAGAAGTTAATCTTTTTGCGTAT
TTCAGCAGCTCAGCATGGAAGGGGTATGATGGCGAGGGTGGTTTTTACGA
TGTCTTTCAAACTCTTTTTGATCAATTATGGAAGGAGGAAACTGCTACGT
CTGAGAAACAAAGAGCGAAACCTACGCACAAGTTTGGAAACGGGGATACC
CCATGGGAGGAGGTGCGTGAGTTTTATCAAGAATGGGAACCCTTCTCCTC
GTCAAAGTCGTTCGGATTTGCAGATAAATGGAATCTGGCCGACGCTCCAA
ACAGAGAGTATCGCAGAGCTATGGAAAAAGAAAACAAACGTCAAAGAGCA
AAGTTGAAGAAAGAGTTCAACAATGACGTTCGCGAGCTTGTGAAGTTCGT
GAAAAAAAGAGATCACAGAGTCATCAGACGGCGAGCAGAGGAAGAGAAAG
AACGCAAGGAGAGAGAAAGGGTTAGAAAACACAAAGAAACTATCGAGAAG
GAAGAGAGAAGAGGTGAGGCACAGCGCGTACGAGAGGCCAGAGAGGCTGT
TCTTGAAGAAGACGCTGACGCACTTGATGAAATATTAGCGGGAATTGCTT
TGGATGAGAAAATCGAAAGAAGGCAGCAAAGAAAAAGAGCAAAAGGCGCG
AGTGACGAAGAAACTGATAGCGATACAGAAGAAGAGGAAGACATTGATGA
TGCTTCCGTAGGAGACGATGACCAGTTCTCAAGTGAGGAAGAAGAACTTA
TAGAAGACCTGTACTGCGTAGCGTGTAAAAAGTCATTCCGTACATCCGCG
CAAAAGGCAGATCATGAACGTTCGAAGAAACATAAAGCCGCCATGACCAA
AATGAAACGCCAAGTTCTAAGAGAGGAGAAAGATTATTTAGCGATGGAGG
ACCCACGGGATTCTGTCGATCAGCGTGTTTCCGAACCTAGCGAAGACTTT
TCTGCAGCTGCGTTTGCTCAAATGCCAGAGTCGAAGAAGAAGCGGAAACG
AAAGGTACGAATGCAGCAGGCCACTAAATTCGAGGAAGAAGCCGTAGGTG
ACGAGCCAGAAAGCGAAAGTGAACAAACTGGTTTGAATGAAGAGGAAGAA
AAAGAAGTGGATGAGGGGAAAAGAAAACACGAGGAACGTGTTTTGTCAAA
GAAGGAGAAACGGAAGCTAAGAGAAGAAAAGAAGAAGGCTGCTGGAGCTG
TGCACAAGTGCAATGTTTGTGCCGAAGAATTTCCATCGCGAACAAAACTT
ATGAAGCATGTAAATGCAAAAGGTCATGCTTTGCATACTGAACGACGACg
ttaa