Gchil6571.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6571.t1
Unique NameGchil6571.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:662077..663006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog102107.XP_008243318.1
PFAMsNAD_binding_1
Max annot lvl35493|Streptophyta
Evalue5.78e-51
EggNOG OGsCOG0543@1|root,2QQ7C@2759|Eukaryota,37SP4@33090|Viridiplantae,3GAIF@35493|Streptophyta,4JNHE@91835|fabids
DescriptionFruit protein
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6571Gchil6571Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 662077..663006 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6571.t1.stop1Gchil6571.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 662077..662079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6571.t1.CDS1Gchil6571.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 662077..663006 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6571.t1.exon1Gchil6571.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 662077..663006 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6571.t1.start1Gchil6571.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 663004..663006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6571.t1Gchil6571.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 662077..663006 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6571.t1 ID=Gchil6571.t1|Name=Gchil6571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=310bp
MQRAQSAFLSSTPVALRRQTFSLCRALRPLSQSVSRPSTRPQTTLPLHRL
NPIASTKPQQDTPWNLVKVVENSFHCEGHRYVVVNVGVSGEKGTLIDAYR
VPGMFVQMRASPEDKASFFAISCAPNVSGYFEFLIKDSESVKNVCELKKG
SMVEMSPVLGKGFAMSKLNLADYEEEQKPRDILLFATGTGIAPIRAAIES
PLNGLDLRLRRSVKLFYGARYPNRMPYMERFAMWQVDGVELIPVMSRPQD
AFDKWDGETGYIQDVLKRVGVEKPNQTAALLCGQSGMTEDVSSILIEAGV
PKDRILLNF*
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spliced messenger RNA

>Gchil6571.t1 ID=Gchil6571.t1|Name=Gchil6571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00004390_pilon:662077..663006- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGGGCTCAGAGCGCGTTTCTGAGTTCCACTCCTGTGGCACTCCG
AAGGCAGACTTTCTCTCTATGTCGAGCTTTGCGTCCACTTTCCCAGTCGG
TGAGCCGCCCGTCTACTCGTCCACAAACAACGCTTCCTCTACATCGTCTG
AACCCTATCGCTTCAACCAAACCTCAGCAGGACACTCCATGGAATCTTGT
TAAAGTTGTTGAGAATTCTTTTCATTGTGAGGGTCACCGTTACGTTGTCG
TCAATGTTGGTGTAAGTGGAGAGAAAGGAACGCTAATCGATGCGTATCGA
GTCCCTGGTATGTTTGTGCAAATGCGAGCCTCTCCTGAAGACAAGGCTTC
CTTCTTTGCCATTTCATGTGCCCCAAACGTTTCCGGCTACTTCGAGTTTC
TCATTAAGGACTCTGAATCGGTTAAGAACGTCTGTGAATTGAAGAAAGGC
AGCATGGTTGAAATGTCTCCAGTTTTGGGTAAAGGGTTTGCCATGTCCAA
ACTAAACCTGGCTGATTACGAAGAAGAGCAGAAACCGAGAGATATATTAC
TGTTCGCGACGGGTACGGGTATTGCACCAATTCGAGCTGCAATAGAGTCT
CCACTGAACGGACTTGATTTGAGACTGCGAAGATCTGTTAAATTGTTCTA
TGGTGCTAGGTATCCGAATAGAATGCCTTACATGGAGAGGTTTGCGATGT
GGCAAGTGGACGGCGTGGAACTTATCCCAGTCATGTCTAGACCTCAAGAT
GCATTTGACAAGTGGGATGGGGAAACAGGCTACATTCAGGATGTGCTAAA
AAGGGTAGGCGTCGAGAAGCCGAATCAAACTGCAGCGTTGCTTTGTGGGC
AGAGTGGCATGACCGAAGATGTGTCCAGTATACTCATTGAGGCTGGTGTT
CCAAAGGACCGGATTCTTCTGAACTTTTGA
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protein sequence of Gchil6571.t1

>Gchil6571.t1 ID=Gchil6571.t1|Name=Gchil6571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=310bp
MQRAQSAFLSSTPVALRRQTFSLCRALRPLSQSVSRPSTRPQTTLPLHRL
NPIASTKPQQDTPWNLVKVVENSFHCEGHRYVVVNVGVSGEKGTLIDAYR
VPGMFVQMRASPEDKASFFAISCAPNVSGYFEFLIKDSESVKNVCELKKG
SMVEMSPVLGKGFAMSKLNLADYEEEQKPRDILLFATGTGIAPIRAAIES
PLNGLDLRLRRSVKLFYGARYPNRMPYMERFAMWQVDGVELIPVMSRPQD
AFDKWDGETGYIQDVLKRVGVEKPNQTAALLCGQSGMTEDVSSILIEAGV
PKDRILLNF*
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mRNA from alignment at tig00004390_pilon:662077..663006-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6571.t1 ID=Gchil6571.t1|Name=Gchil6571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00004390_pilon:662077..663006- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGGGCTCAGAGCGCGTTTCTGAGTTCCACTCCTGTGGCACTCCG
AAGGCAGACTTTCTCTCTATGTCGAGCTTTGCGTCCACTTTCCCAGTCGG
TGAGCCGCCCGTCTACTCGTCCACAAACAACGCTTCCTCTACATCGTCTG
AACCCTATCGCTTCAACCAAACCTCAGCAGGACACTCCATGGAATCTTGT
TAAAGTTGTTGAGAATTCTTTTCATTGTGAGGGTCACCGTTACGTTGTCG
TCAATGTTGGTGTAAGTGGAGAGAAAGGAACGCTAATCGATGCGTATCGA
GTCCCTGGTATGTTTGTGCAAATGCGAGCCTCTCCTGAAGACAAGGCTTC
CTTCTTTGCCATTTCATGTGCCCCAAACGTTTCCGGCTACTTCGAGTTTC
TCATTAAGGACTCTGAATCGGTTAAGAACGTCTGTGAATTGAAGAAAGGC
AGCATGGTTGAAATGTCTCCAGTTTTGGGTAAAGGGTTTGCCATGTCCAA
ACTAAACCTGGCTGATTACGAAGAAGAGCAGAAACCGAGAGATATATTAC
TGTTCGCGACGGGTACGGGTATTGCACCAATTCGAGCTGCAATAGAGTCT
CCACTGAACGGACTTGATTTGAGACTGCGAAGATCTGTTAAATTGTTCTA
TGGTGCTAGGTATCCGAATAGAATGCCTTACATGGAGAGGTTTGCGATGT
GGCAAGTGGACGGCGTGGAACTTATCCCAGTCATGTCTAGACCTCAAGAT
GCATTTGACAAGTGGGATGGGGAAACAGGCTACATTCAGGATGTGCTAAA
AAGGGTAGGCGTCGAGAAGCCGAATCAAACTGCAGCGTTGCTTTGTGGGC
AGAGTGGCATGACCGAAGATGTGTCCAGTATACTCATTGAGGCTGGTGTT
CCAAAGGACCGGATTCTTCTGAACTTTTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:662077..663006-

>Gchil6571.t1 ID=Gchil6571.t1|Name=Gchil6571.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00004390_pilon:662077..663006- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGGGCTCAGAGCGCGTTTCTGAGTTCCACTCCTGTGGCACTCCG
AAGGCAGACTTTCTCTCTATGTCGAGCTTTGCGTCCACTTTCCCAGTCGG
TGAGCCGCCCGTCTACTCGTCCACAAACAACGCTTCCTCTACATCGTCTG
AACCCTATCGCTTCAACCAAACCTCAGCAGGACACTCCATGGAATCTTGT
TAAAGTTGTTGAGAATTCTTTTCATTGTGAGGGTCACCGTTACGTTGTCG
TCAATGTTGGTGTAAGTGGAGAGAAAGGAACGCTAATCGATGCGTATCGA
GTCCCTGGTATGTTTGTGCAAATGCGAGCCTCTCCTGAAGACAAGGCTTC
CTTCTTTGCCATTTCATGTGCCCCAAACGTTTCCGGCTACTTCGAGTTTC
TCATTAAGGACTCTGAATCGGTTAAGAACGTCTGTGAATTGAAGAAAGGC
AGCATGGTTGAAATGTCTCCAGTTTTGGGTAAAGGGTTTGCCATGTCCAA
ACTAAACCTGGCTGATTACGAAGAAGAGCAGAAACCGAGAGATATATTAC
TGTTCGCGACGGGTACGGGTATTGCACCAATTCGAGCTGCAATAGAGTCT
CCACTGAACGGACTTGATTTGAGACTGCGAAGATCTGTTAAATTGTTCTA
TGGTGCTAGGTATCCGAATAGAATGCCTTACATGGAGAGGTTTGCGATGT
GGCAAGTGGACGGCGTGGAACTTATCCCAGTCATGTCTAGACCTCAAGAT
GCATTTGACAAGTGGGATGGGGAAACAGGCTACATTCAGGATGTGCTAAA
AAGGGTAGGCGTCGAGAAGCCGAATCAAACTGCAGCGTTGCTTTGTGGGC
AGAGTGGCATGACCGAAGATGTGTCCAGTATACTCATTGAGGCTGGTGTT
CCAAAGGACCGGATTCTTCTGAACTTTTGA
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