Gchil6563.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6563.t1
Unique NameGchil6563.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:637512..638820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706493.1
Preferred nameDRG2
PFAMsMMR_HSR1,MMR_HSR1_Xtn,TGS
Max annot lvl2759|Eukaryota
KEGG koko:K06944
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002181,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006412,GO:0006518,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010646,GO:0010647,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0019538,GO:0023052,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070300,GO:0071704,GO:0080134,GO:0080135,GO:0097159,GO:0097367,GO:0097708,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903832,GO:1903833
Evalue2.66e-195
EggNOG OGsCOG1163@1|root,KOG1486@2759|Eukaryota
DescriptionGTP binding
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6563Gchil6563Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 637512..638820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6563.t1Gchil6563.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 637512..638820 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6563.t1.start1Gchil6563.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 637512..637514 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6563.t1.CDS1Gchil6563.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 637512..637586 +
Gchil6563.t1.CDS2Gchil6563.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 637701..637902 +
Gchil6563.t1.CDS3Gchil6563.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 637994..638820 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6563.t1.exon1Gchil6563.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 637512..637586 +
Gchil6563.t1.exon2Gchil6563.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 637701..637902 +
Gchil6563.t1.exon3Gchil6563.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 637994..638820 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6563.t1.intron1Gchil6563.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 637587..637700 +
Gchil6563.t1.intron2Gchil6563.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004390_pilon 637903..637993 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6563.t1.stop1Gchil6563.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 638818..638820 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6563.t1 ID=Gchil6563.t1|Name=Gchil6563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=368bp
MGVQERIKEIEAEMARTQKNKATEGHLGILKAKLAKLRREALDGPKTGGN
SADRGFEVVKHGDARVAVVGFPSTGKSTFLSTVTETKSEAANYEFTTLTC
VPGILEHKGATIQLLDLPGIIEGAAQGKGRGRQVIAVARSADLILLMLDA
TKSDVQRSLLENELESVGIRLNKRPPDVYFRPKQTGGIAFTATVPLTKIT
DKIAMSILKEYKIHNAELLIREDISVDELIDVLDGNRQYIRCLYLYSKID
AVSIEEVDRLAREPNSVVMSCYLKLNLDYVVEQIWEYLQLCRIYTKKQGS
PPDFNEPIVLRGGSKVEDACRAIHRSLADPSQFRYALVWGSSTKHDPQRV
GLSHNLKDEDVVQIVTK*
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spliced messenger RNA

>Gchil6563.t1 ID=Gchil6563.t1|Name=Gchil6563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00004390_pilon:637512..638820+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTCCAAGAAAGAATCAAAGAAATTGAGGCCGAAATGGCGCGTAC
TCAGAAGAACAAGGCCACTGAAGGACATCTAGGTATCCTGAAAGCAAAAC
TTGCGAAGCTACGCCGCGAGGCTCTCGATGGTCCGAAAACAGGGGGAAAC
TCTGCCGATCGCGGATTTGAGGTTGTAAAGCACGGCGATGCGAGGGTCGC
AGTCGTAGGATTTCCATCAACTGGAAAGAGTACTTTTCTGAGCACTGTCA
CCGAGACCAAAAGCGAAGCCGCAAACTATGAGTTTACCACATTGACGTGC
GTACCGGGCATCCTTGAGCACAAGGGAGCCACCATTCAGTTGTTGGACTT
GCCAGGGATTATTGAGGGAGCCGCACAAGGAAAGGGGCGCGGCCGACAGG
TAATTGCTGTTGCACGTTCAGCAGATCTTATTTTACTCATGCTTGACGCC
ACAAAATCAGATGTTCAAAGAAGTCTGCTGGAAAACGAGCTCGAATCCGT
GGGGATCCGACTGAATAAGAGACCACCGGATGTGTATTTCAGGCCGAAGC
AAACCGGAGGAATCGCTTTCACAGCAACAGTTCCGCTCACTAAAATCACG
GACAAAATAGCAATGAGTATCTTGAAGGAATACAAGATACATAACGCTGA
ACTGCTAATCCGGGAGGACATCAGCGTGGATGAGCTAATCGATGTGCTTG
ACGGAAACAGACAATACATAAGGTGTTTATACCTCTACAGCAAAATTGAC
GCCGTCTCAATTGAAGAAGTTGATCGACTGGCACGAGAGCCAAACTCCGT
GGTTATGTCATGTTATCTGAAGTTGAATCTGGACTATGTAGTGGAGCAGA
TATGGGAGTACCTACAGCTCTGCAGAATATACACTAAGAAGCAAGGCTCT
CCTCCGGACTTCAACGAACCTATTGTACTACGCGGGGGCAGCAAAGTTGA
AGACGCATGTCGCGCCATCCACAGAAGTCTTGCAGATCCTTCTCAATTCC
GCTACGCCCTGGTGTGGGGATCATCAACAAAACACGATCCACAACGTGTA
GGTCTCTCTCACAACCTTAAAGATGAAGACGTTGTTCAAATCGTTACAAA
GTGA
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protein sequence of Gchil6563.t1

>Gchil6563.t1 ID=Gchil6563.t1|Name=Gchil6563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=368bp
MGVQERIKEIEAEMARTQKNKATEGHLGILKAKLAKLRREALDGPKTGGN
SADRGFEVVKHGDARVAVVGFPSTGKSTFLSTVTETKSEAANYEFTTLTC
VPGILEHKGATIQLLDLPGIIEGAAQGKGRGRQVIAVARSADLILLMLDA
TKSDVQRSLLENELESVGIRLNKRPPDVYFRPKQTGGIAFTATVPLTKIT
DKIAMSILKEYKIHNAELLIREDISVDELIDVLDGNRQYIRCLYLYSKID
AVSIEEVDRLAREPNSVVMSCYLKLNLDYVVEQIWEYLQLCRIYTKKQGS
PPDFNEPIVLRGGSKVEDACRAIHRSLADPSQFRYALVWGSSTKHDPQRV
GLSHNLKDEDVVQIVTK*
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mRNA from alignment at tig00004390_pilon:637512..638820+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6563.t1 ID=Gchil6563.t1|Name=Gchil6563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1309bp|location=Sequence derived from alignment at tig00004390_pilon:637512..638820+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGTCCAAGAAAGAATCAAAGAAATTGAGGCCGAAATGGCGCGTAC
TCAGAAGAACAAGGCCACTGAAGGAGTGAGTTAAAACGGGAATCAAAGGA
GGATGTATCTCAGAGACGCAGTGGTTCGCAAAATCAGATTTGGAGCAAAA
GACTAACCCGACTGCAATCGAATATGATGCCACCAAAAGCATCTAGGTAT
CCTGAAAGCAAAACTTGCGAAGCTACGCCGCGAGGCTCTCGATGGTCCGA
AAACAGGGGGAAACTCTGCCGATCGCGGATTTGAGGTTGTAAAGCACGGC
GATGCGAGGGTCGCAGTCGTAGGATTTCCATCAACTGGAAAGAGTACTTT
TCTGAGCACTGTCACCGAGACCAAAAGCGAAGCCGCAAACTGTACGTGGA
TCTATTCGCTTTCATCTTTACACCTATTTTGTACATCTAACATACTCGTC
ACATCTGTGCTGGTGCGTTGTCTTTATGATAGATGAGTTTACCACATTGA
CGTGCGTACCGGGCATCCTTGAGCACAAGGGAGCCACCATTCAGTTGTTG
GACTTGCCAGGGATTATTGAGGGAGCCGCACAAGGAAAGGGGCGCGGCCG
ACAGGTAATTGCTGTTGCACGTTCAGCAGATCTTATTTTACTCATGCTTG
ACGCCACAAAATCAGATGTTCAAAGAAGTCTGCTGGAAAACGAGCTCGAA
TCCGTGGGGATCCGACTGAATAAGAGACCACCGGATGTGTATTTCAGGCC
GAAGCAAACCGGAGGAATCGCTTTCACAGCAACAGTTCCGCTCACTAAAA
TCACGGACAAAATAGCAATGAGTATCTTGAAGGAATACAAGATACATAAC
GCTGAACTGCTAATCCGGGAGGACATCAGCGTGGATGAGCTAATCGATGT
GCTTGACGGAAACAGACAATACATAAGGTGTTTATACCTCTACAGCAAAA
TTGACGCCGTCTCAATTGAAGAAGTTGATCGACTGGCACGAGAGCCAAAC
TCCGTGGTTATGTCATGTTATCTGAAGTTGAATCTGGACTATGTAGTGGA
GCAGATATGGGAGTACCTACAGCTCTGCAGAATATACACTAAGAAGCAAG
GCTCTCCTCCGGACTTCAACGAACCTATTGTACTACGCGGGGGCAGCAAA
GTTGAAGACGCATGTCGCGCCATCCACAGAAGTCTTGCAGATCCTTCTCA
ATTCCGCTACGCCCTGGTGTGGGGATCATCAACAAAACACGATCCACAAC
GTGTAGGTCTCTCTCACAACCTTAAAGATGAAGACGTTGTTCAAATCGTT
ACAAAGTGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:637512..638820+

>Gchil6563.t1 ID=Gchil6563.t1|Name=Gchil6563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00004390_pilon:637512..638820+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGTCCAAGAAAGAATCAAAGAAATTGAGGCCGAAATGGCGCGTAC
TCAGAAGAACAAGGCCACTGAAGGACATCTAGGTATCCTGAAAGCAAAAC
TTGCGAAGCTACGCCGCGAGGCTCTCGATGGTCCGAAAACAGGGGGAAAC
TCTGCCGATCGCGGATTTGAGGTTGTAAAGCACGGCGATGCGAGGGTCGC
AGTCGTAGGATTTCCATCAACTGGAAAGAGTACTTTTCTGAGCACTGTCA
CCGAGACCAAAAGCGAAGCCGCAAACTATGAGTTTACCACATTGACGTGC
GTACCGGGCATCCTTGAGCACAAGGGAGCCACCATTCAGTTGTTGGACTT
GCCAGGGATTATTGAGGGAGCCGCACAAGGAAAGGGGCGCGGCCGACAGG
TAATTGCTGTTGCACGTTCAGCAGATCTTATTTTACTCATGCTTGACGCC
ACAAAATCAGATGTTCAAAGAAGTCTGCTGGAAAACGAGCTCGAATCCGT
GGGGATCCGACTGAATAAGAGACCACCGGATGTGTATTTCAGGCCGAAGC
AAACCGGAGGAATCGCTTTCACAGCAACAGTTCCGCTCACTAAAATCACG
GACAAAATAGCAATGAGTATCTTGAAGGAATACAAGATACATAACGCTGA
ACTGCTAATCCGGGAGGACATCAGCGTGGATGAGCTAATCGATGTGCTTG
ACGGAAACAGACAATACATAAGGTGTTTATACCTCTACAGCAAAATTGAC
GCCGTCTCAATTGAAGAAGTTGATCGACTGGCACGAGAGCCAAACTCCGT
GGTTATGTCATGTTATCTGAAGTTGAATCTGGACTATGTAGTGGAGCAGA
TATGGGAGTACCTACAGCTCTGCAGAATATACACTAAGAAGCAAGGCTCT
CCTCCGGACTTCAACGAACCTATTGTACTACGCGGGGGCAGCAAAGTTGA
AGACGCATGTCGCGCCATCCACAGAAGTCTTGCAGATCCTTCTCAATTCC
GCTACGCCCTGGTGTGGGGATCATCAACAAAACACGATCCACAACGTGTA
GGTCTCTCTCACAACCTTAAAGATGAAGACGTTGTTCAAATCGTTACAAA
GTGA
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