Gchil6550.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6550.t1
Unique NameGchil6550.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length551
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:589490..591142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6550Gchil6550Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 589490..591142 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6550.t1.start1Gchil6550.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 589490..589492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6550.t1.CDS1Gchil6550.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 589490..591142 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6550.t1.exon1Gchil6550.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 589490..591142 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6550.t1.stop1Gchil6550.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 591140..591142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6550.t1Gchil6550.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 589490..591142 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6550.t1 ID=Gchil6550.t1|Name=Gchil6550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=551bp
MILTRAKLQEQRTTFLCTPITEKQRLLHRLPCVRGVECFSDAYLAPYASH
SNRAFLMNALTPPIGFVNITADTPGKYVFGAGRFKPNLQFLRPKWFERRI
CSKRCDEVILGYVSILLITVLTEIVLNFLKSLVPDVCFFVNPSQKHDRRD
WEEIADGVQTLLSYRFLNLWSRYRSGQKFRFRTVLMVVLALSIFLLDGSL
IILTQPNQYPSEQYEYNLLGNHPIGADDGLGKFLRRNARERPCITPVFYE
SNPIRNYSLSTCHTFDLREAHQQAEDSVNYVKIGSWFHKGGSDHHISFGN
ASIKIKARAIIYGAEGGTWRLLFPILYNNHIRITHYLHQRVIGKILKDSC
RAERSPRSCSELIVGHRIDLKLVTKEILLWVPRNRGINRKEHVRGLETTV
RAGIKQPWETVFQSLGPLMTTELIQEVKGPSSYAHIATEEERQGIPGLLY
LERRKVSAVLLLLCFPIAALVLCCVKLFWRKAYHSSDHSKSDLGVVSSDQ
VSLNNFSESVGSDKEATDPISSELHSVFCSQDDVTRKIEQETTSSLNSGG
*
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spliced messenger RNA

>Gchil6550.t1 ID=Gchil6550.t1|Name=Gchil6550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004390_pilon:589490..591142+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCTTACTAGAGCGAAACTCCAGGAGCAACGTACGACTTTCCTATG
TACTCCCATTACCGAAAAGCAACGTTTGCTTCATCGACTTCCATGTGTTC
GTGGAGTAGAGTGTTTCTCAGATGCTTACTTGGCCCCATATGCCTCACAT
TCCAATCGTGCTTTTCTCATGAACGCTCTCACGCCTCCTATTGGGTTTGT
GAACATCACTGCTGATACGCCTGGAAAATATGTTTTCGGCGCTGGCAGAT
TTAAACCAAACCTACAATTCTTAAGACCCAAATGGTTTGAAAGGCGGATC
TGCTCCAAACGATGTGATGAAGTGATACTTGGCTATGTCTCAATTCTTTT
AATCACAGTCTTGACAGAAATTGTGTTGAACTTTCTCAAGTCTCTAGTCC
CCGATGTATGCTTTTTTGTTAATCCAAGCCAGAAGCATGATAGGCGCGAC
TGGGAAGAAATTGCAGATGGCGTACAGACACTGCTCAGTTATCGTTTTTT
AAACCTTTGGAGCCGATACAGATCAGGACAGAAGTTTCGGTTTAGAACAG
TGTTGATGGTTGTTCTTGCTCTTTCCATTTTCCTACTCGATGGTTCACTA
ATAATCTTGACTCAACCGAATCAGTATCCGAGCGAGCAATACGAATACAA
TTTGTTGGGAAACCACCCCATCGGAGCTGACGATGGCTTGGGAAAGTTTT
TGCGTAGGAATGCTCGAGAGCGCCCGTGCATCACGCCCGTGTTTTACGAG
TCAAACCCCATTCGAAACTACTCTCTCAGCACGTGTCATACTTTTGACCT
CCGAGAAGCCCATCAGCAAGCGGAAGACAGTGTGAACTATGTGAAAATAG
GATCATGGTTTCACAAAGGTGGCAGCGATCACCATATATCATTCGGAAAT
GCTAGCATTAAAATTAAGGCGCGTGCGATCATTTACGGTGCGGAAGGTGG
GACATGGAGACTGCTCTTTCCCATCCTGTACAATAACCATATACGCATCA
CGCATTACCTGCATCAGCGAGTTATTGGAAAGATCCTGAAAGACAGCTGC
AGGGCTGAGCGCAGTCCCAGAAGCTGTTCTGAATTGATCGTCGGGCATCG
AATCGATCTGAAGCTGGTCACCAAAGAAATTTTACTGTGGGTACCTAGAA
ACCGTGGGATCAATAGGAAAGAGCATGTGCGAGGGTTGGAAACTACTGTA
AGAGCTGGAATTAAGCAGCCATGGGAAACAGTATTTCAGAGCTTGGGACC
CTTAATGACAACAGAGCTTATTCAGGAAGTTAAAGGACCTAGTTCTTACG
CCCATATAGCTACAGAGGAAGAAAGACAAGGGATTCCAGGTCTCCTTTAT
CTAGAACGAAGAAAAGTCAGTGCAGTTCTGCTGCTTTTATGTTTCCCTAT
TGCTGCACTAGTCCTCTGCTGTGTGAAATTATTCTGGAGAAAAGCATATC
ACTCATCGGATCACAGCAAAAGCGATCTCGGCGTTGTTAGTAGCGATCAG
GTGTCGCTCAACAATTTCTCGGAGAGCGTTGGTTCCGACAAGGAAGCAAC
GGACCCTATCTCTTCGGAACTTCATTCGGTTTTTTGCTCTCAAGATGATG
TTACACGAAAGATAGAACAAGAAACGACTTCTTCCCTGAACTCGGGCGGG
TGA
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protein sequence of Gchil6550.t1

>Gchil6550.t1 ID=Gchil6550.t1|Name=Gchil6550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=551bp
MILTRAKLQEQRTTFLCTPITEKQRLLHRLPCVRGVECFSDAYLAPYASH
SNRAFLMNALTPPIGFVNITADTPGKYVFGAGRFKPNLQFLRPKWFERRI
CSKRCDEVILGYVSILLITVLTEIVLNFLKSLVPDVCFFVNPSQKHDRRD
WEEIADGVQTLLSYRFLNLWSRYRSGQKFRFRTVLMVVLALSIFLLDGSL
IILTQPNQYPSEQYEYNLLGNHPIGADDGLGKFLRRNARERPCITPVFYE
SNPIRNYSLSTCHTFDLREAHQQAEDSVNYVKIGSWFHKGGSDHHISFGN
ASIKIKARAIIYGAEGGTWRLLFPILYNNHIRITHYLHQRVIGKILKDSC
RAERSPRSCSELIVGHRIDLKLVTKEILLWVPRNRGINRKEHVRGLETTV
RAGIKQPWETVFQSLGPLMTTELIQEVKGPSSYAHIATEEERQGIPGLLY
LERRKVSAVLLLLCFPIAALVLCCVKLFWRKAYHSSDHSKSDLGVVSSDQ
VSLNNFSESVGSDKEATDPISSELHSVFCSQDDVTRKIEQETTSSLNSGG
*
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mRNA from alignment at tig00004390_pilon:589490..591142+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6550.t1 ID=Gchil6550.t1|Name=Gchil6550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at tig00004390_pilon:589490..591142+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCTTACTAGAGCGAAACTCCAGGAGCAACGTACGACTTTCCTATG
TACTCCCATTACCGAAAAGCAACGTTTGCTTCATCGACTTCCATGTGTTC
GTGGAGTAGAGTGTTTCTCAGATGCTTACTTGGCCCCATATGCCTCACAT
TCCAATCGTGCTTTTCTCATGAACGCTCTCACGCCTCCTATTGGGTTTGT
GAACATCACTGCTGATACGCCTGGAAAATATGTTTTCGGCGCTGGCAGAT
TTAAACCAAACCTACAATTCTTAAGACCCAAATGGTTTGAAAGGCGGATC
TGCTCCAAACGATGTGATGAAGTGATACTTGGCTATGTCTCAATTCTTTT
AATCACAGTCTTGACAGAAATTGTGTTGAACTTTCTCAAGTCTCTAGTCC
CCGATGTATGCTTTTTTGTTAATCCAAGCCAGAAGCATGATAGGCGCGAC
TGGGAAGAAATTGCAGATGGCGTACAGACACTGCTCAGTTATCGTTTTTT
AAACCTTTGGAGCCGATACAGATCAGGACAGAAGTTTCGGTTTAGAACAG
TGTTGATGGTTGTTCTTGCTCTTTCCATTTTCCTACTCGATGGTTCACTA
ATAATCTTGACTCAACCGAATCAGTATCCGAGCGAGCAATACGAATACAA
TTTGTTGGGAAACCACCCCATCGGAGCTGACGATGGCTTGGGAAAGTTTT
TGCGTAGGAATGCTCGAGAGCGCCCGTGCATCACGCCCGTGTTTTACGAG
TCAAACCCCATTCGAAACTACTCTCTCAGCACGTGTCATACTTTTGACCT
CCGAGAAGCCCATCAGCAAGCGGAAGACAGTGTGAACTATGTGAAAATAG
GATCATGGTTTCACAAAGGTGGCAGCGATCACCATATATCATTCGGAAAT
GCTAGCATTAAAATTAAGGCGCGTGCGATCATTTACGGTGCGGAAGGTGG
GACATGGAGACTGCTCTTTCCCATCCTGTACAATAACCATATACGCATCA
CGCATTACCTGCATCAGCGAGTTATTGGAAAGATCCTGAAAGACAGCTGC
AGGGCTGAGCGCAGTCCCAGAAGCTGTTCTGAATTGATCGTCGGGCATCG
AATCGATCTGAAGCTGGTCACCAAAGAAATTTTACTGTGGGTACCTAGAA
ACCGTGGGATCAATAGGAAAGAGCATGTGCGAGGGTTGGAAACTACTGTA
AGAGCTGGAATTAAGCAGCCATGGGAAACAGTATTTCAGAGCTTGGGACC
CTTAATGACAACAGAGCTTATTCAGGAAGTTAAAGGACCTAGTTCTTACG
CCCATATAGCTACAGAGGAAGAAAGACAAGGGATTCCAGGTCTCCTTTAT
CTAGAACGAAGAAAAGTCAGTGCAGTTCTGCTGCTTTTATGTTTCCCTAT
TGCTGCACTAGTCCTCTGCTGTGTGAAATTATTCTGGAGAAAAGCATATC
ACTCATCGGATCACAGCAAAAGCGATCTCGGCGTTGTTAGTAGCGATCAG
GTGTCGCTCAACAATTTCTCGGAGAGCGTTGGTTCCGACAAGGAAGCAAC
GGACCCTATCTCTTCGGAACTTCATTCGGTTTTTTGCTCTCAAGATGATG
TTACACGAAAGATAGAACAAGAAACGACTTCTTCCCTGAACTCGGGCGGG
TGA
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Coding sequence (CDS) from alignment at tig00004390_pilon:589490..591142+

>Gchil6550.t1 ID=Gchil6550.t1|Name=Gchil6550.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1653bp|location=Sequence derived from alignment at tig00004390_pilon:589490..591142+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCTTACTAGAGCGAAACTCCAGGAGCAACGTACGACTTTCCTATG
TACTCCCATTACCGAAAAGCAACGTTTGCTTCATCGACTTCCATGTGTTC
GTGGAGTAGAGTGTTTCTCAGATGCTTACTTGGCCCCATATGCCTCACAT
TCCAATCGTGCTTTTCTCATGAACGCTCTCACGCCTCCTATTGGGTTTGT
GAACATCACTGCTGATACGCCTGGAAAATATGTTTTCGGCGCTGGCAGAT
TTAAACCAAACCTACAATTCTTAAGACCCAAATGGTTTGAAAGGCGGATC
TGCTCCAAACGATGTGATGAAGTGATACTTGGCTATGTCTCAATTCTTTT
AATCACAGTCTTGACAGAAATTGTGTTGAACTTTCTCAAGTCTCTAGTCC
CCGATGTATGCTTTTTTGTTAATCCAAGCCAGAAGCATGATAGGCGCGAC
TGGGAAGAAATTGCAGATGGCGTACAGACACTGCTCAGTTATCGTTTTTT
AAACCTTTGGAGCCGATACAGATCAGGACAGAAGTTTCGGTTTAGAACAG
TGTTGATGGTTGTTCTTGCTCTTTCCATTTTCCTACTCGATGGTTCACTA
ATAATCTTGACTCAACCGAATCAGTATCCGAGCGAGCAATACGAATACAA
TTTGTTGGGAAACCACCCCATCGGAGCTGACGATGGCTTGGGAAAGTTTT
TGCGTAGGAATGCTCGAGAGCGCCCGTGCATCACGCCCGTGTTTTACGAG
TCAAACCCCATTCGAAACTACTCTCTCAGCACGTGTCATACTTTTGACCT
CCGAGAAGCCCATCAGCAAGCGGAAGACAGTGTGAACTATGTGAAAATAG
GATCATGGTTTCACAAAGGTGGCAGCGATCACCATATATCATTCGGAAAT
GCTAGCATTAAAATTAAGGCGCGTGCGATCATTTACGGTGCGGAAGGTGG
GACATGGAGACTGCTCTTTCCCATCCTGTACAATAACCATATACGCATCA
CGCATTACCTGCATCAGCGAGTTATTGGAAAGATCCTGAAAGACAGCTGC
AGGGCTGAGCGCAGTCCCAGAAGCTGTTCTGAATTGATCGTCGGGCATCG
AATCGATCTGAAGCTGGTCACCAAAGAAATTTTACTGTGGGTACCTAGAA
ACCGTGGGATCAATAGGAAAGAGCATGTGCGAGGGTTGGAAACTACTGTA
AGAGCTGGAATTAAGCAGCCATGGGAAACAGTATTTCAGAGCTTGGGACC
CTTAATGACAACAGAGCTTATTCAGGAAGTTAAAGGACCTAGTTCTTACG
CCCATATAGCTACAGAGGAAGAAAGACAAGGGATTCCAGGTCTCCTTTAT
CTAGAACGAAGAAAAGTCAGTGCAGTTCTGCTGCTTTTATGTTTCCCTAT
TGCTGCACTAGTCCTCTGCTGTGTGAAATTATTCTGGAGAAAAGCATATC
ACTCATCGGATCACAGCAAAAGCGATCTCGGCGTTGTTAGTAGCGATCAG
GTGTCGCTCAACAATTTCTCGGAGAGCGTTGGTTCCGACAAGGAAGCAAC
GGACCCTATCTCTTCGGAACTTCATTCGGTTTTTTGCTCTCAAGATGATG
TTACACGAAAGATAGAACAAGAAACGACTTCTTCCCTGAACTCGGGCGGG
TGA
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