Gchil6549.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6549.t1
Unique NameGchil6549.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004390_piloncontigtig00004390_pilon:549931..550614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001742793.1
PFAMsGLTP
Max annot lvl33154|Opisthokonta
KEGG koko:K08051
Evalue7.18e-24
EggNOG OGsKOG3221@1|root,KOG3221@2759|Eukaryota,392MM@33154|Opisthokonta
Descriptionglycolipid transporter activity
COG categoryG
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6549Gchil6549Gracilaria chilensis NLEC103_M9 malegenetig00004390_pilon 549931..550614 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6549.t1.stop1Gchil6549.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004390_pilon 549931..549933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6549.t1.CDS1Gchil6549.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004390_pilon 549931..550614 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6549.t1.exon1Gchil6549.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004390_pilon 549931..550614 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6549.t1.start1Gchil6549.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004390_pilon 550612..550614 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6549.t1Gchil6549.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004390_pilon 549931..550614 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6549.t1 ID=Gchil6549.t1|Name=Gchil6549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=228bp
MSSSTAPQRDFQFFLEIVEAFKVSATSAPDGDFKNMNVSKFVEAMTMFLR
IFDAFANPFFSDFVKKDVKGNIDKLRAGAKKTKCATIEGVIDAECSDPKL
KKLIVKESGEGSETATVGLLWMKRTMQFVIGLLRYLVQDSSISLSNASRK
SYSESLRYCHNFVTRGVFDTGLRFAPSRESFYKNLAGGAEDVSIVDAPMK
EFLNVFDPQLDGIVAMYKEKNLETYIK*
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spliced messenger RNA

>Gchil6549.t1 ID=Gchil6549.t1|Name=Gchil6549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004390_pilon:549931..550614- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCATCAACAGCACCCCAACGCGACTTTCAGTTCTTTCTGGAAAT
TGTGGAAGCATTCAAAGTATCAGCTACCAGCGCTCCTGATGGGGACTTCA
AGAACATGAACGTGAGCAAGTTCGTGGAAGCTATGACCATGTTCCTTCGC
ATTTTTGACGCATTCGCAAATCCCTTCTTCTCAGATTTTGTCAAGAAGGA
TGTGAAGGGAAACATCGACAAACTTCGTGCAGGAGCAAAGAAGACCAAGT
GCGCAACGATCGAAGGCGTTATCGATGCAGAATGTTCGGATCCGAAACTG
AAGAAGCTGATTGTGAAGGAGTCTGGTGAAGGCTCAGAAACTGCAACTGT
TGGTTTGCTGTGGATGAAGCGTACGATGCAGTTTGTCATCGGTCTGCTGC
GTTACCTTGTTCAAGACTCGTCTATTTCGCTGTCGAATGCGAGTCGAAAG
TCATACTCTGAGTCATTGCGATATTGTCACAACTTTGTCACTCGCGGCGT
CTTTGACACAGGTTTAAGATTTGCACCCTCTCGCGAATCTTTTTATAAAA
ACCTCGCAGGTGGGGCAGAGGACGTTTCTATTGTCGACGCACCGATGAAG
GAGTTCCTCAACGTGTTTGATCCTCAACTCGATGGGATCGTGGCTATGTA
CAAAGAAAAAAACCTCGAAACATACATAAAGTAA
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protein sequence of Gchil6549.t1

>Gchil6549.t1 ID=Gchil6549.t1|Name=Gchil6549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=228bp
MSSSTAPQRDFQFFLEIVEAFKVSATSAPDGDFKNMNVSKFVEAMTMFLR
IFDAFANPFFSDFVKKDVKGNIDKLRAGAKKTKCATIEGVIDAECSDPKL
KKLIVKESGEGSETATVGLLWMKRTMQFVIGLLRYLVQDSSISLSNASRK
SYSESLRYCHNFVTRGVFDTGLRFAPSRESFYKNLAGGAEDVSIVDAPMK
EFLNVFDPQLDGIVAMYKEKNLETYIK*
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mRNA from alignment at tig00004390_pilon:549931..550614-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6549.t1 ID=Gchil6549.t1|Name=Gchil6549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00004390_pilon:549931..550614- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCATCAACAGCACCCCAACGCGACTTTCAGTTCTTTCTGGAAAT
TGTGGAAGCATTCAAAGTATCAGCTACCAGCGCTCCTGATGGGGACTTCA
AGAACATGAACGTGAGCAAGTTCGTGGAAGCTATGACCATGTTCCTTCGC
ATTTTTGACGCATTCGCAAATCCCTTCTTCTCAGATTTTGTCAAGAAGGA
TGTGAAGGGAAACATCGACAAACTTCGTGCAGGAGCAAAGAAGACCAAGT
GCGCAACGATCGAAGGCGTTATCGATGCAGAATGTTCGGATCCGAAACTG
AAGAAGCTGATTGTGAAGGAGTCTGGTGAAGGCTCAGAAACTGCAACTGT
TGGTTTGCTGTGGATGAAGCGTACGATGCAGTTTGTCATCGGTCTGCTGC
GTTACCTTGTTCAAGACTCGTCTATTTCGCTGTCGAATGCGAGTCGAAAG
TCATACTCTGAGTCATTGCGATATTGTCACAACTTTGTCACTCGCGGCGT
CTTTGACACAGGTTTAAGATTTGCACCCTCTCGCGAATCTTTTTATAAAA
ACCTCGCAGGTGGGGCAGAGGACGTTTCTATTGTCGACGCACCGATGAAG
GAGTTCCTCAACGTGTTTGATCCTCAACTCGATGGGATCGTGGCTATGTA
CAAAGAAAAAAACCTCGAAACATACATAAAGTAA
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Coding sequence (CDS) from alignment at tig00004390_pilon:549931..550614-

>Gchil6549.t1 ID=Gchil6549.t1|Name=Gchil6549.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00004390_pilon:549931..550614- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCATCAACAGCACCCCAACGCGACTTTCAGTTCTTTCTGGAAAT
TGTGGAAGCATTCAAAGTATCAGCTACCAGCGCTCCTGATGGGGACTTCA
AGAACATGAACGTGAGCAAGTTCGTGGAAGCTATGACCATGTTCCTTCGC
ATTTTTGACGCATTCGCAAATCCCTTCTTCTCAGATTTTGTCAAGAAGGA
TGTGAAGGGAAACATCGACAAACTTCGTGCAGGAGCAAAGAAGACCAAGT
GCGCAACGATCGAAGGCGTTATCGATGCAGAATGTTCGGATCCGAAACTG
AAGAAGCTGATTGTGAAGGAGTCTGGTGAAGGCTCAGAAACTGCAACTGT
TGGTTTGCTGTGGATGAAGCGTACGATGCAGTTTGTCATCGGTCTGCTGC
GTTACCTTGTTCAAGACTCGTCTATTTCGCTGTCGAATGCGAGTCGAAAG
TCATACTCTGAGTCATTGCGATATTGTCACAACTTTGTCACTCGCGGCGT
CTTTGACACAGGTTTAAGATTTGCACCCTCTCGCGAATCTTTTTATAAAA
ACCTCGCAGGTGGGGCAGAGGACGTTTCTATTGTCGACGCACCGATGAAG
GAGTTCCTCAACGTGTTTGATCCTCAACTCGATGGGATCGTGGCTATGTA
CAAAGAAAAAAACCTCGAAACATACATAAAGTAA
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