Gchil6546.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6546.t1
Unique Name	Gchil6546.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	295

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004390_pilon	contig	tig00004390_pilon:467570..468454 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_10449T0
Max annot lvl	2759\|Eukaryota
Evalue	3.45e-16
EggNOG OGs	2E99P@1\|root,2SFNP@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6546	Gchil6546	Gracilaria chilensis NLEC103_M9 male	gene	tig00004390_pilon 467570..468454 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6546.t1.start1	Gchil6546.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004390_pilon 467570..467572 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6546.t1.CDS1	Gchil6546.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004390_pilon 467570..468454 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6546.t1.exon1	Gchil6546.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004390_pilon 467570..468454 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6546.t1.stop1	Gchil6546.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004390_pilon 468452..468454 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6546.t1	Gchil6546.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004390_pilon 467570..468454 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004390_pilon:467570..468454+
coding sequence from alignment at tig00004390_pilon:467570..468454+

mRNA sequence

>Gchil6546.t1 ID=Gchil6546.t1|Name=Gchil6546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=295bp
MKPTPSGVRYMCVGALLATTFITIGVILSCLYGASASLRLANSPTSPQET
LQLSDAPAAPAQPISASTSSADRLPPSEEQRLYQRKALVNYGDIWMSPLE
VNLILRNLDGKNVYIEYGSGGSTFNFPQFVKHAVSVEHDREWCKKVKEKL
STKPNLSHIDYRCFYVDKGFRGFNTGGRTEGTYPMFKEYVDQIDSAGHDL
YDFVLIDGRARVDCSIKILSYISQKTPVFIHDSVRFFKTGEYSPALKYYD
MIDSIGGDSRQGIVLLRRKKEYQHLQGDHAAIQQILHEKYNISI*

spliced messenger RNA

>Gchil6546.t1 ID=Gchil6546.t1|Name=Gchil6546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004390_pilon:467570..468454+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCCACACCGTCTGGCGTGCGGTATATGTGTGTGGGTGCTCTACT
CGCCACTACCTTCATTACCATCGGCGTGATTCTTTCGTGTTTGTATGGTG
CTTCTGCATCCCTTCGCCTTGCAAATTCACCTACATCCCCGCAAGAAACC
TTACAGCTTTCCGATGCGCCCGCCGCCCCTGCACAGCCTATCTCTGCTTC
AACGTCGTCCGCAGATCGTCTCCCACCATCCGAAGAACAGCGTCTCTATC
AGAGAAAAGCGCTTGTCAATTACGGCGATATTTGGATGAGTCCGCTCGAA
GTGAACCTCATACTTCGTAATCTGGATGGCAAAAATGTTTACATTGAATA
CGGCAGCGGTGGCAGTACCTTTAATTTTCCTCAGTTTGTTAAGCATGCCG
TATCTGTTGAACATGATCGTGAATGGTGCAAGAAAGTCAAGGAAAAGCTT
TCCACCAAGCCGAACTTATCGCATATTGACTACAGGTGTTTTTACGTCGA
CAAGGGCTTCAGGGGTTTCAATACCGGGGGTCGGACAGAGGGCACGTATC
CAATGTTCAAGGAATATGTCGATCAAATTGATTCCGCTGGCCACGATTTA
TATGACTTTGTTCTTATCGACGGTCGAGCAAGAGTCGATTGTTCAATCAA
GATTCTCAGTTATATTTCGCAGAAAACTCCTGTCTTCATTCATGACAGTG
TTCGTTTCTTCAAGACCGGAGAATACTCCCCAGCTCTCAAATACTATGAT
ATGATCGACTCCATTGGTGGAGATAGTCGACAGGGCATTGTTTTGCTAAG
AAGAAAGAAGGAATATCAACATCTTCAAGGCGATCATGCTGCGATTCAAC
AAATTCTCCATGAAAAGTACAACATCTCAATATAG

protein sequence of Gchil6546.t1

>Gchil6546.t1 ID=Gchil6546.t1|Name=Gchil6546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=295bp
MKPTPSGVRYMCVGALLATTFITIGVILSCLYGASASLRLANSPTSPQET
LQLSDAPAAPAQPISASTSSADRLPPSEEQRLYQRKALVNYGDIWMSPLE
VNLILRNLDGKNVYIEYGSGGSTFNFPQFVKHAVSVEHDREWCKKVKEKL
STKPNLSHIDYRCFYVDKGFRGFNTGGRTEGTYPMFKEYVDQIDSAGHDL
YDFVLIDGRARVDCSIKILSYISQKTPVFIHDSVRFFKTGEYSPALKYYD
MIDSIGGDSRQGIVLLRRKKEYQHLQGDHAAIQQILHEKYNISI*

mRNA from alignment at tig00004390_pilon:467570..468454+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6546.t1 ID=Gchil6546.t1|Name=Gchil6546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00004390_pilon:467570..468454+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCACACCGTCTGGCGTGCGGTATATGTGTGTGGGTGCTCTACT
CGCCACTACCTTCATTACCATCGGCGTGATTCTTTCGTGTTTGTATGGTG
CTTCTGCATCCCTTCGCCTTGCAAATTCACCTACATCCCCGCAAGAAACC
TTACAGCTTTCCGATGCGCCCGCCGCCCCTGCACAGCCTATCTCTGCTTC
AACGTCGTCCGCAGATCGTCTCCCACCATCCGAAGAACAGCGTCTCTATC
AGAGAAAAGCGCTTGTCAATTACGGCGATATTTGGATGAGTCCGCTCGAA
GTGAACCTCATACTTCGTAATCTGGATGGCAAAAATGTTTACATTGAATA
CGGCAGCGGTGGCAGTACCTTTAATTTTCCTCAGTTTGTTAAGCATGCCG
TATCTGTTGAACATGATCGTGAATGGTGCAAGAAAGTCAAGGAAAAGCTT
TCCACCAAGCCGAACTTATCGCATATTGACTACAGGTGTTTTTACGTCGA
CAAGGGCTTCAGGGGTTTCAATACCGGGGGTCGGACAGAGGGCACGTATC
CAATGTTCAAGGAATATGTCGATCAAATTGATTCCGCTGGCCACGATTTA
TATGACTTTGTTCTTATCGACGGTCGAGCAAGAGTCGATTGTTCAATCAA
GATTCTCAGTTATATTTCGCAGAAAACTCCTGTCTTCATTCATGACAGTG
TTCGTTTCTTCAAGACCGGAGAATACTCCCCAGCTCTCAAATACTATGAT
ATGATCGACTCCATTGGTGGAGATAGTCGACAGGGCATTGTTTTGCTAAG
AAGAAAGAAGGAATATCAACATCTTCAAGGCGATCATGCTGCGATTCAAC
AAATTCTCCATGAAAAGTACAACATCTCAATATAG

Coding sequence (CDS) from alignment at tig00004390_pilon:467570..468454+

>Gchil6546.t1 ID=Gchil6546.t1|Name=Gchil6546.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00004390_pilon:467570..468454+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCCCACACCGTCTGGCGTGCGGTATATGTGTGTGGGTGCTCTACT
CGCCACTACCTTCATTACCATCGGCGTGATTCTTTCGTGTTTGTATGGTG
CTTCTGCATCCCTTCGCCTTGCAAATTCACCTACATCCCCGCAAGAAACC
TTACAGCTTTCCGATGCGCCCGCCGCCCCTGCACAGCCTATCTCTGCTTC
AACGTCGTCCGCAGATCGTCTCCCACCATCCGAAGAACAGCGTCTCTATC
AGAGAAAAGCGCTTGTCAATTACGGCGATATTTGGATGAGTCCGCTCGAA
GTGAACCTCATACTTCGTAATCTGGATGGCAAAAATGTTTACATTGAATA
CGGCAGCGGTGGCAGTACCTTTAATTTTCCTCAGTTTGTTAAGCATGCCG
TATCTGTTGAACATGATCGTGAATGGTGCAAGAAAGTCAAGGAAAAGCTT
TCCACCAAGCCGAACTTATCGCATATTGACTACAGGTGTTTTTACGTCGA
CAAGGGCTTCAGGGGTTTCAATACCGGGGGTCGGACAGAGGGCACGTATC
CAATGTTCAAGGAATATGTCGATCAAATTGATTCCGCTGGCCACGATTTA
TATGACTTTGTTCTTATCGACGGTCGAGCAAGAGTCGATTGTTCAATCAA
GATTCTCAGTTATATTTCGCAGAAAACTCCTGTCTTCATTCATGACAGTG
TTCGTTTCTTCAAGACCGGAGAATACTCCCCAGCTCTCAAATACTATGAT
ATGATCGACTCCATTGGTGGAGATAGTCGACAGGGCATTGTTTTGCTAAG
AAGAAAGAAGGAATATCAACATCTTCAAGGCGATCATGCTGCGATTCAAC
AAATTCTCCATGAAAAGTACAACATCTCAATATAG